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* [svn-r22735] Purpose:Jonathan Kim2012-09-0412-29/+871
| | | | | | | | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access. Reasons to break collective I/O: - SET_INDEPENDENT - DATATYPE_CONVERSION - DATA_TRANSFORMS - MPIPOSIX - NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space) - POINT_SELECTIONS - NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage) - FILTERS Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r22732] Snapshot version 1.9 release 127HDF Tester2012-09-0214-29/+29
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* [svn-r22726] remove duplicate file lineAllen Byrne2012-08-301-1/+0
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* [svn-r22725] Add other h5 files needed by pbits testsAllen Byrne2012-08-301-0/+3
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* [svn-r22722] Update all references from configure.in to configure.acAllen Byrne2012-08-2810-47/+37
| | | | Tested: h5committest
* [svn-r22720] Fix RelWithDebInfo packagingAllen Byrne2012-08-2812-24/+24
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* [svn-r22718] Remove unneeded srcdir testAllen Byrne2012-08-271-5/+0
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* [svn-r22716] HDFFV-8133: Add usage text to see Reference manual for compact ↵Allen Byrne2012-08-279-153/+162
| | | | subsetting.
* [svn-r22714] one more missed VAR change for parallel examplesAllen Byrne2012-08-268-357/+12
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* [svn-r22712] Updated a missed example makefile. Tested locally with make ↵Allen Byrne2012-08-242-6/+351
| | | | installcheck (another h5committest understanding oversight)
* [svn-r22710] Remove reference to srcdir in TOOL pathAllen Byrne2012-08-231-1/+1
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* [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of ↵Allen Byrne2012-08-2382-752/+781
| | | | | | autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files. Tested: h5committest
* [svn-r22707] Description:Quincey Koziol2012-08-226-201/+171
| | | | | | | | | | Bring back some more cleanups from the plist_encode_decode branch, clean up some formatting and compiler errors, and add a few more property comparison routines that we've skipped implementing in the past. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22706] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-2248-2823/+5180
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22703] Description:Dana Robinson2012-08-212-556/+541
| | | | | | | | Propagated Windows and POSIX correctness changes from SEC2 VFD to the MPI-POSIX VFD. Fixes HDFFV-8058. Tested on: jam w/ parallel and fortran enabled
* [svn-r22700] Description:Dana Robinson2012-08-203-10/+44
| | | | | | | | Minor refactoring to extract managed object length determination. This makes the tiny, managed, and huge code work alike. Tested on: jam (very minor change, no need for full commit test)
* [svn-r22697] Snapshot version 1.9 release 126HDF Tester2012-08-1915-31/+32
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* [svn-r22694] Description:Dana Robinson2012-08-171-88/+74
| | | | | | | Minor change to consolidate odd bitmasking due to an old bugfix. Tested on: jam (very minor change)
* [svn-r22693] Add missing H5Tclose().Allen Byrne2012-08-171-1/+3
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* [svn-r22691] Purpose:Jonathan Kim2012-08-161-2/+2
| | | | | | | | | | | HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: This is additional fix due to daily build fail against previous r22684. Refer to the svn -r22684 log for previous details Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), cmake (jam)
* [svn-r22684] Purpose: Jonathan Kim2012-08-1511-20/+103
| | | | | | | | | | | | Address HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: When comparing attribute data values with same type class but different size, the result was incorrect. It was due to the size difference and got truncated. Fixed to match up the smaller type size to big type size like what dataset does. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22681] Description:Quincey Koziol2012-08-1510-1071/+590
| | | | | | | | Clean up file driver property handling, along with some misc. warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.1, C++, FORTRAN & threadsafe (h5committest upcoming)
* [svn-r22679] Changed H5O_copy_search_comm_dt_check() to use H5O_obj_class() ↵Vailin Choi2012-08-141-6/+10
| | | | | | to get object type instead of H5O_get_info(...TRUE...) saving time in traversing metadata. (This is part of the checkin to 1.8 branch #22677)
* [svn-r22676] Changes needed to make the default free-list mapping from ↵Vailin Choi2012-08-1318-169/+708
| | | | H5FD_FLMAP_SINGLE to H5FD_FLMAP_DICHOTOMY.
* [svn-r22674] Remove checks for filters are available because the h5dump ↵Allen Byrne2012-08-132-114/+14
| | | | | | tests never used the filters in the tests. "-H" option excludes data. HDFFV-8125
* [svn-r22673] Add "_" to list of version separatorsAllen Byrne2012-08-131-1/+1
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* [svn-r22670] Snapshot version 1.9 release 125HDF Tester2012-08-1214-30/+30
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* [svn-r22668] Description:Quincey Koziol2012-08-115-38/+150
| | | | | | | | | Have free space manager use temporary address space for storing the section info, until the file is flushed or closed. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.x, C++, FORTRAN & threadsafe (h5committest forthcoming)
* [svn-r22666] Description:Quincey Koziol2012-08-117-181/+401
| | | | | | | | | | Merge "flush me last" & "flush me collectively" feature from the avoid_truncate branch back to the trunk. (To help enable allowing the free space section info to reside in temporary address space) Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.x, C++, FORTRAN & threadsafe (h5committest forthcoming)
* [svn-r22657] Bug fix: previous commit has a mistake--it used the wrong type ↵Albert Cheng2012-08-091-1/+1
| | | | | | | | of return value of FAIL. The function type is a pointer. Fixed it by changing it to NULL. Tested: In remote machine ADA (aix).
* [svn-r22651] fix a bug that would skip or include the parallel atomicity ↵Mohamad Chaarawi2012-08-092-11/+15
| | | | test with cmd arguments -o or -x
* [svn-r22650] Allow second find_package call for legacy libraries (not ↵Allen Byrne2012-08-091-0/+8
| | | | cmake-configured)
* [svn-r22646] Description:Quincey Koziol2012-08-0833-109/+168
| | | | | | | | | Changes resulting from Klocwork static analysis tool, from Mark Miller @ LLNL (miller86@llnl.gov). Tested on: Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x (too minor to require h5committest)
* [svn-r22642] Correct check for filters in tools testAllen Byrne2012-08-082-8/+29
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* [svn-r22637] Remove legacy command to kill MPI processes on obj to obj testing.Allen Byrne2012-08-061-18/+9
| | | | Tested: Windows, jam, koala
* [svn-r22633] Correct packaing infoAllen Byrne2012-08-061-5/+6
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* [svn-r22631] Move executable statement to after declarationsAllen Byrne2012-08-061-2/+2
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* [svn-r22629] Snapshot version 1.9 release 124Larry Knox2012-08-0514-30/+30
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* [svn-r22627] Description:Quincey Koziol2012-08-0317-95/+179
| | | | | | | | | Merge some of the changes on the plist_encode_decode branch back to the trunk. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22625] HDFFV-8111: h5diff compare file to itself - removed path shortcutAllen Byrne2012-08-0310-464/+217
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* [svn-r22624] The cmake folder needed a local variable to not include a "." ↵Allen Byrne2012-08-031-5/+7
| | | | as one of the path components on windows.
* [svn-r22622] Windows config is up one levelAllen Byrne2012-08-021-1/+3
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* [svn-r22620] Add ${CMAKE_RUNTIME_OUTPUT_DIRECTORY} to default include_dirsAllen Byrne2012-08-022-23/+3
| | | | Correct cmake packaging names
* [svn-r22618] Jonathan Kim2012-08-013-16/+5
| | | | | | | | | | | | | | Purpose: HDFFV-8003 - ph5diff (parallel h5diff): daily test failure on ember intermittently during non comparable test file comparison HDFFV-7755 - parallel h5diff : hanging on koala intermittently during non comparable test file comparison Description: non-comparable test intermittently hung on koala and ember, but not on jam. it didn't occur until -np reaches 4 or bigger. it occurred once out of many repeated attempts of the same test. There was a incorrectly (mistakenly?) duplicated code in MPI section which caused such hang in a certain condition. The test used more processes than other tests, which increased chance to trigger more undone processes, and such process could enter the incorrect code section and wait for wrong pair of send. it explains why it occurred intermittently according to machine condition and using a certain feature. Removed incorrect code which blocked correct code. Tested: some manually repeated test performed jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
* [svn-r22617] Purpose:Jonathan Kim2012-08-0111-61/+174
| | | | | | | | | | | | | | | Fix for HDFFV-8107 testh5diff will fail if build/test in HDF5 source tree Description: This is sub-task for "HDFFV-8105 testh5diff.sh uses the wrong operator (-a) in an if statement." From the HDFFV-8105's update, h5diff test failed if build&test is performed in HDF5 source tree because 'cp' try to copy test files to self dir. It's addressed by skipping if cp's src dir and dest dir is same. Also this applied for all other tools under src/tools dir. No change to the CMakeLists.txt files because CMake cautions/demands that in-source builds be avoided. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), some manual tests as well
* [svn-r22614] Revert heading of summary.Allen Byrne2012-07-301-1/+1
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* [svn-r22611] Fixed: HDFFV-8013 H5LTget_attribute_string appears to not ↵Scot Breitenfeld2012-07-271-2/+7
| | | | | | close an object identifier Tested: gnu and intel (jam)
* [svn-r22610] HDFFV-8055 H5TBdelete_record destroys data after the deleted rowScot Breitenfeld2012-07-272-2/+125
| | | | | | Added fix and test case. Tested: gnu and intel (jam)
* [svn-r22608] Description:Quincey Koziol2012-07-2647-488/+689
| | | | | | | | | | | | | | | Switch propert list/class iteration from internal to external form of iteration, cleaning up and simplifying the code a bit. Bring other general improvements from plist_encode_decode branch back to trunk. Clean up many warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/gcc 4.7, debug and C++ & FORTRAN (too minor to require h5committest)
* [svn-r22606] Correct typo from cut/pasteAllen Byrne2012-07-261-5/+4
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