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* Minor WhitespaceAllen Byrne2019-12-171-2/+2
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2019-12-1750-205/+5154
|\ | | | | | | | | | | | | | | | | | | * commit '1097ac60c2b95a2b958a3150b537c75f512cacca': Merge t_2Gio test into hdf5_1_12. This will eventually be refactored out after merging the test functionality into the testphdf5 test. Merge t_2Gio test into hdf5_1_12. This will eventually be refactored out after merging the test functionality into the testphdf5 test. Minor tweaks noticed while going over VOL documentation. Yanked -Wc++-compat from the flags used to build the C library in both the Autotools and CMake. Fixed missing blob callbacks in test VOL connectors. Trivial parameter renaming in VOL API calls.
| * Merge pull request #2145 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_12 to ↵Dana Robinson2019-12-1746-204/+197
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit 'd1c07a5a6f1653ed9abd37b319e210853be9b68d': Minor tweaks noticed while going over VOL documentation. Yanked -Wc++-compat from the flags used to build the C library in both the Autotools and CMake. Fixed missing blob callbacks in test VOL connectors. Trivial parameter renaming in VOL API calls.
| | * Minor tweaks noticed while going over VOL documentation.Dana Robinson2019-12-163-6/+6
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| | * Yanked -Wc++-compat from the flags used to build the C library in bothDana Robinson2019-12-1637-175/+156
| | | | | | | | | | | | the Autotools and CMake.
| | * Fixed missing blob callbacks in test VOL connectors.Dana Robinson2019-12-162-0/+12
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| | * Trivial parameter renaming in VOL API calls.Dana Robinson2019-12-164-23/+23
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| * | Merge pull request #2144 in HDFFV/hdf5 from Merging-t_2Gio-into_hdf5_1_12 to ↵Richard Warren2019-12-174-1/+4957
| |\ \ | | |/ | |/| | | | | | | | | | | | | | | | hdf5_1_12 * commit '663d6e0118d6077b8206b69521a3909a5444c8bf': Merge t_2Gio test into hdf5_1_12. This will eventually be refactored out after merging the test functionality into the testphdf5 test. Merge t_2Gio test into hdf5_1_12. This will eventually be refactored out after merging the test functionality into the testphdf5 test.
| | * Merge t_2Gio test into hdf5_1_12. This will eventually be refactored out ↵Richard Warren2019-12-164-3/+5
| | | | | | | | | | | | after merging the test functionality into the testphdf5 test.
| | * Merge t_2Gio test into hdf5_1_12. This will eventually be refactored out ↵Richard Warren2019-12-161-0/+4954
| |/ | | | | | | after merging the test functionality into the testphdf5 test.
* | Remove duplicate instanceAllen Byrne2019-12-161-6/+0
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* Merge pull request #2141 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to ↵Allen Byrne2019-12-1510-36/+1301
|\ | | | | | | | | | | | | hdf5_1_12 * commit '6f5d0d60c34f732cd51c99258cb10986e009715c': TRILABS-135 add clang sanitizer support
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2019-12-1511-2/+153
| |\ | |/ |/| | | | | * commit '8ae9bfa1d9f642afcc11e12bda5b1eeb2c9b7510': Modify H5VL initialization routines to initialize all VOL-managed object types. Modify H5VLwrap_register() to reject non-VOL-managed object types. Also fix overisights in h5trace.c from previous changes.
* | Merge pull request #2142 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:tmp_112 to ↵Neil Fortner2019-12-1311-2/+153
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit '5b751543ca7be96a91cd2db55976188f9ddbace1': Modify H5VL initialization routines to initialize all VOL-managed object types. Modify H5VLwrap_register() to reject non-VOL-managed object types. Also fix overisights in h5trace.c from previous changes.
| * | Modify H5VL initialization routines to initialize all VOL-managed objectNeil Fortner2019-12-1311-2/+153
|/ / | | | | | | | | types. Modify H5VLwrap_register() to reject non-VOL-managed object types. Also fix overisights in h5trace.c from previous changes.
| * TRILABS-135 add clang sanitizer supportAllen Byrne2019-12-1310-36/+1301
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* Merge pull request #2135 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to ↵Allen Byrne2019-12-136-15/+24
|\ | | | | | | | | | | | | | | | | hdf5_1_12 * commit '44e4f16e1df69f4facc82bf7aaafaa16e9aee85f': Revert and move declaration Correct compile and test Windows errors HDFFV-10979 cleanup global names
| * Revert and move declarationAllen Byrne2019-12-131-3/+5
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| * Correct compile and test Windows errorsAllen Byrne2019-12-134-10/+19
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| * HDFFV-10979 cleanup global namesAllen Byrne2019-12-122-7/+5
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* | Merge pull request #2140 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to ↵hdf5-1_12_0-alpha1Larry Knox2019-12-126-7/+7
|\ \ | |/ |/| | | | | | | | | hdf5_1_12 * commit '4b569143f07b4cc32cb4c26fdf24d5ae6ae50172': Update version to 1.12.0-alpha1.
| * Update version to 1.12.0-alpha1.Larry Knox2019-12-126-7/+7
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* Merge pull request #2134 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:hdf5_1_12 ↵Allen Byrne2019-12-114-718/+727
|\ | | | | | | | | | | | | to hdf5_1_12 * commit 'abf6bb125007b9df5cbd1c10f63541a1f0e65bb1': HDFFV-10979 Merge global name fix from develop
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2019-12-11110-5226/+7448
| |\ | |/ |/| | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f30381d33d9e179ec30a8b46c2db218f2c45d2c1': Fix issues when using ONLY_SHARED_LIBS Change defines to not conflict with windows Correct assignment Fix h5watch fault Add missing include folder Fix reference file Correct testfile name Remove program find - future rework Fix compile error and add ref destroy to Java test HDFFV-10876 Merge from develop Remove unneeded flag overwrites
* | Merge pull request #2117 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to ↵Allen Byrne2019-12-11110-5226/+7448
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit '907a630019c9059eafb0e5af3aeb0f63f47d3d44': Fix issues when using ONLY_SHARED_LIBS Change defines to not conflict with windows Correct assignment Fix h5watch fault Add missing include folder Fix reference file Correct testfile name Remove program find - future rework Fix compile error and add ref destroy to Java test HDFFV-10876 Merge from develop Remove unneeded flag overwrites
| * \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2019-12-112-2/+2
| |\ \ | |/ / |/| | | | | | | | * commit '9b38aef978299a76b6b19586396bf626a1e58df6': Fix 2010 compile issue
| * | Fix issues when using ONLY_SHARED_LIBSAllen Byrne2019-12-114-4/+3
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2019-12-111-0/+6
| |\ \ | | | | | | | | | | | | | | | | | | | | * commit '3eef4d575ebd23eeb54660e244e604e0159a0aec': Latest date first in HISTORY-1_10_0-1_12_0.txt Update HISTORY-1_10_0-1_12_0..txt with performance improvements
| * | | Change defines to not conflict with windowsAllen Byrne2019-12-1111-199/+208
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| * | | Correct assignmentAllen Byrne2019-12-101-1/+1
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| * | | Fix h5watch faultAllen Byrne2019-12-101-10/+11
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| * | | Add missing include folderAllen Byrne2019-12-101-1/+1
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| * | | Fix reference fileAllen Byrne2019-12-101-1006/+1009
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| * | | Correct testfile nameAllen Byrne2019-12-091-2/+2
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| * | | Remove program find - future reworkAllen Byrne2019-12-091-18/+0
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| * | | Fix compile error and add ref destroy to Java testAllen Byrne2019-12-091-202/+105
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| * | | HDFFV-10876 Merge from developAllen Byrne2019-12-0993-3924/+6257
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| * | | Remove unneeded flag overwritesAllen Byrne2019-12-091-8/+0
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| | | * HDFFV-10979 Merge global name fix from developAllen Byrne2019-12-114-718/+727
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* | | Merge pull request #2129 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:hdf5_1_12 ↵Allen Byrne2019-12-112-2/+2
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | to hdf5_1_12 * commit '555d7a6ce3731fb27e67fed692196a38a77c8d62': Fix 2010 compile issue
| * | Fix 2010 compile issueAllen Byrne2019-12-112-2/+2
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* | Merge pull request #2121 in HDFFV/hdf5 from ↵Chris Hogan2019-12-111-0/+6
|\ \ | |/ |/| | | | | | | | | | | ~CHOGAN/hdf5:chogan/1.12/release_txt to hdf5_1_12 * commit '080b96fb25cd4752914f3b77f944d5982c8ab139': Latest date first in HISTORY-1_10_0-1_12_0.txt Update HISTORY-1_10_0-1_12_0..txt with performance improvements
| * Latest date first in HISTORY-1_10_0-1_12_0.txtChris Hogan2019-12-101-6/+6
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| * Update HISTORY-1_10_0-1_12_0..txt with performance improvementsChris Hogan2019-12-101-0/+6
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* Merge pull request #2116 in HDFFV/hdf5 from ↵Jerome Soumagne2019-12-0922-325/+571
|\ | | | | | | | | | | | | | | | | | | ~JSOUMAGNE/hdf5:hdf5-1_12-ref_token to hdf5_1_12 * commit '1aea46ce671daf2828ac65d0b8551b369f497922': Fix H5VL_token_t type and fix H5VL_loc_by_token to use H5VL_token_t * Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc. H5R: fix H5Tconv to check for null references Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
| * Fix H5VL_token_t type and fix H5VL_loc_by_token to use H5VL_token_t *Jerome Soumagne2019-12-097-33/+35
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| * Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char toDavid Young2019-12-094-144/+145
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc. An interesting side-effect that we probably should *not* rely on is that the struct-encapsulation changes the alignment so that some GCC warnings about casts that increase the alignment requirement of the operand go away. Warnings like that have to be taken seriously: I will add -Werror=cast-align to the default compiler flags so that they stop the build quickly. GCC warnings led me to some surprising casts in test/trefer.c. I found that it was possible to make many simplifications after introducing the struct-encapsulation that I described, above. In test objcopy_ref `same_file` is assigned but never used. Delete it.
| * H5R: fix H5Tconv to check for null referencesJerome Soumagne2019-12-095-46/+304
| | | | | | | | | | | | Valid for both deprecated and non-deprecated references Update test
| * Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILEJerome Soumagne2019-12-0916-103/+88
| | | | | | | | Remove H5F__get_file_id() and use only private routine instead
* | Merge pull request #2115 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:tmp_112 to ↵Neil Fortner2019-12-091-1/+1
|\ \ | |/ |/| | | | | | | | | hdf5_1_12 * commit '096ed7a14a6b4fe19ad9d3791e769f4a650c3042': Modify H5Ssel_iter_get_seq_list() to accept iterators that have reached the end of iteration (returning zero sequences). Previously it could cause an assertion failure.
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