Commit message (Collapse) | Author | Age | Files | Lines | |
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* | Update build script to match change in presets (#3409) | Allen Byrne | 2023-08-22 | 1 | -25/+25 |
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* | Merge/update CMake, presets,java and tools (#3393) | Allen Byrne | 2023-08-21 | 238 | -3388/+5413 |
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* | Fix loading plugin fails with missing directory GH issue #3248 (#3324) | Allen Byrne | 2023-08-02 | 6 | -30/+68 |
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* | sync bin dir with develop (#3270) | Allen Byrne | 2023-07-25 | 13 | -54/+41 |
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* | Merge changes from develop (#3238) | Allen Byrne | 2023-07-18 | 6 | -404/+136 |
| | | | | | | | * Merge changes from develop * Add last snapshot name * Merge bbrelease into release | ||||
* | Adjust presets timeout and fix build script VS versions (#3217) | Allen Byrne | 2023-06-30 | 2 | -8/+8 |
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* | Hdf5 1 12 release action (#3199) | Allen Byrne | 2023-06-30 | 7 | -129/+241 |
| | | | | * Update actions for release option, fix branch for daily build * Scheduled workflows run on latest commit on the develop | ||||
* | Add missing space in zip command (#3169) | Allen Byrne | 2023-06-22 | 1 | -1/+1 |
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* | Remove duplicate code (#3161) | Allen Byrne | 2023-06-20 | 1 | -23/+0 |
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* | Update github files/workflow from develop (#3155) | Allen Byrne | 2023-06-19 | 3 | -5/+32 |
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* | Add java options to build scripts (#3137) | mattjala | 2023-06-15 | 4 | -3/+18 |
| | | | | | | | | | | | | | | | | | Previously, cmakehdf5 turned on compiling of the java interface by default due to a value set in cacheinit.cmake. Now, consistent with how Fortran and CPP interfaces are handled, the script overwrites this default value to disable the libraries, fixing #2958. I also implemented the --enable-java/--disable java options for cmakehdf5, and -java for buildhdf5. Allen said these scripts should mention that compilers are to be specified in environment variables, but missing compilers causes errors at the CMake level, and CMake's error messages are already pretty informative (See the one in #2958 about JAVA_COMPILER). | ||||
* | Merges from develop/1.14 (#3118) | Allen Byrne | 2023-06-15 | 42 | -567/+320 |
| | | | | | | | | | | | | * Fix release action that allows files to be uploaded. Add autotools h5copy help test. Update cmake tools.cmake file for clang-tidy. CMake build is missing H5FDsubfiling.h macros improved for configure output capture. Remove obsolete files * Revert parallel config with TS * Fix doxygen warnings | ||||
* | Bring MD cache uthash tag list from develop (#3099) | Dana Robinson | 2023-06-12 | 3 | -216/+75 |
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* | Adds a release note for Autoconf 2.71 bump (#3092) | Dana Robinson | 2023-06-10 | 1 | -1/+24 |
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* | Minor normalization w/ develop (#3073) | Dana Robinson | 2023-06-07 | 12 | -54/+75 |
| | | | | | | | Mostly bin directory * bin/release uses sha256 * bin/h5vers whitespace changes * bin/genparser warning fixes + HL changes * Add bin directory for make distclean | ||||
* | Add autotools generated files to codespell (#3075) | Larry Knox | 2023-06-07 | 1 | -2/+2 |
| | | | | | Add autotools files for codespell to skip in order to avoid codespell failing for misspelled words in files generated by autotools when running autogen.sh. | ||||
* | Update uthash and move to H5private.h (#3074) | Dana Robinson | 2023-06-07 | 4 | -86/+57 |
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* | Remove unused cruft from bin dir (#3071) | Dana Robinson | 2023-06-07 | 13 | -593/+5 |
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* | Bring HDF-EOS5 and netCDF actions from develop (#3064) | Dana Robinson | 2023-06-07 | 2 | -0/+103 |
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* | Bring gcc/clang attribute and warning macros over (#3063) | Dana Robinson | 2023-06-07 | 2 | -47/+89 |
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* | Move config/cmake_ext_mod content to config/cmake (#3062) | Dana Robinson | 2023-06-07 | 50 | -846/+821 |
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* | Bring key changesets from develop (#3052) | Dana Robinson | 2023-06-06 | 12 | -39/+85 |
| | | | | | | | | | * Bump GitHub action macOS version to 13 (#2999, #3009) * Bump GitHub action gcc/g++/gfortran version to 12 (#3015) * Bump Autoconf version to 2.71 (#2944) * Fix missing h5_reset() calls in accum test (#3001) * Only run ttsafe in GitHub thread-safe actions (#2777) * Fix Java debug asserts on Windows (#3012) * Fix long double dt_arith bug on macOS (#3038) | ||||
* | Update actions and change defaults of compression (fix vars) (#3043) | Allen Byrne | 2023-06-05 | 20 | -201/+367 |
| | | | | | | | | | * Update actions and change defaults of compression (fix vars) * disable TS and parallel * remove parallel for TS * Correct list of default options | ||||
* | Remove most unused options which are defaulted #2998 (#3046) | Allen Byrne | 2023-06-05 | 17 | -923/+30 |
| | | | | | | | * Remove most unused options which are defaulted #2998 * Correct doxygen predefined list * Correct doxygen list of predefineds | ||||
* | Hdf5 1 12 dt action (#2965) | Allen Byrne | 2023-05-18 | 4 | -4/+354 |
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* | Add h5copy help test and verify consistency (#2903) | Allen Byrne | 2023-05-18 | 9 | -50/+142 |
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* | Update 1.12 release_docs/README_HPC (#2976) | Larry Knox | 2023-05-18 | 1 | -14/+12 |
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* | Prevent buffer overrun in H5S_select_deserialize (#2956) | mattjala | 2023-05-18 | 12 | -213/+560 |
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* | Update action uses version (#2939) | Allen Byrne | 2023-05-12 | 1 | -1/+1 |
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* | Fix CMake generator expression syntax (#2940) | Allen Byrne | 2023-05-12 | 11 | -38/+57 |
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* | Add configure_file commands for batch (#2882) | Allen Byrne | 2023-05-03 | 1 | -0/+8 |
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* | Correct usage of CMAKE_BUILD_TYPE (#2868) | Allen Byrne | 2023-05-02 | 3 | -23/+20 |
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* | Correct compression install files (#2847) | Allen Byrne | 2023-04-30 | 2 | -8/+22 |
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* | Add bug note to H5Dget_space_status documentation (#2788) (#2836) | jhendersonHDF | 2023-04-30 | 1 | -0/+14 |
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* | Add support for CMakePresets and fix example download (#2819) | Allen Byrne | 2023-04-30 | 6 | -12/+893 |
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* | Clean up memory allocated when reading messages in H5Dlayout on error (#2811) | glennsong09 | 2023-04-30 | 2 | -5/+26 |
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* | Fix v1 object header gap bug in H5Ocopy (#2785) (#2833) | jhendersonHDF | 2023-04-30 | 3 | -2/+83 |
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* | H5Spoint.c: Comment fix (#2782) | Dave Allured | 2023-04-20 | 1 | -1/+1 |
| | | | Comment should be "point", not "hyperslab". | ||||
* | Add no subsets option to h5diff like h5dump (#2760) | Allen Byrne | 2023-04-19 | 17 | -270/+205 |
| | | | * reorder argument in alpha order | ||||
* | Add new version of COPYING_LBNL_HDF5. (#2776) | Larry Knox | 2023-04-18 | 1 | -48/+60 |
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* | Fixed GH-2603, heap-buffer-overflow in H5O__linfo_decode (#2763) | bmribler | 2023-04-18 | 2 | -8/+33 |
| | | | | Verified with valgrind -v --tool=memcheck --leak-check=full h5dump POV-GH-2603 The several invalid reads shown originally are now gone. | ||||
* | Check for invalid AAPL in H5Aopen (#2712) (#2771) | jhendersonHDF | 2023-04-18 | 1 | -5/+9 |
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* | Remove author and date from RELEASE.txt entries (#2752) | Dana Robinson | 2023-04-16 | 1 | -43/+15 |
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* | Add buffer overrun checks to H5O__layout_decode and H5O__sdspace_decode ↵ | jhendersonHDF | 2023-04-15 | 4 | -53/+278 |
| | | | | (#2679) (#2729) | ||||
* | Fix a heap buffer overflow during H5D__compact_readvv (GitHub #2606) (#2664) ↵ | jhendersonHDF | 2023-04-15 | 2 | -0/+46 |
| | | | | (#2726) | ||||
* | H5O__pline_decode() Make more resilient to out-of-bounds read (#2210) (#2733) | jhendersonHDF | 2023-04-15 | 3 | -2/+28 |
| | | | | | | | | | Malformed hdf5 files may have trunkated content which does not match the expected size. When this function attempts to decode these it may read past the end of the allocated space leading to heap overflows as bounds checking is incomplete. Make sure each element is within bounds before reading. This fixes CVE-2019-8396 / HDFFV-10712 / github bug #2209. | ||||
* | Remove 1.12 release schedule (#2744) | Dana Robinson | 2023-04-14 | 3 | -64/+0 |
| | | | | | | There is no need to maintain the release schedule in each branch, so it's being removed from all branches aside from develop. Also removes the badges that don't pertain to 1.12 | ||||
* | Fix for github issue #2599: (#2665) (#2735) | vchoi-hdfgroup | 2023-04-14 | 2 | -1/+20 |
| | | | | | | | | | | | | As indicated in the description, memory leak is detected when running "./h5dump pov". The problem is: when calling H5O__add_cont_msg() from H5O__chunk_deserialize(), memory is allocated for cont_msg_info->msgs. Eventually, when the library tries to load the continuation message via H5AC_protect() in H5O_protect(), error is encountered due to illegal info in the continuation message. Due to the error, H5O_protect() exits but the memory allocated for cont_msg_info->msgs is not freed. When we figure out how to handle fuzzed files that we didn't generate, a test needs to be added to run h5dump with the provided "pov" file. | ||||
* | Add Elena to CODEOWNERS for Fortran | Dana Robinson | 2023-04-14 | 1 | -1/+1 |
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* | CMake - Match Autotools behavior for library instrumentation (#2648) (#2673) | jhendersonHDF | 2023-04-13 | 2 | -1/+17 |
| | | | Enable library instrumentation by default for parallel debug builds |