| Commit message (Collapse) | Author | Age | Files | Lines |
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* We assume that fseeko and ftello exist.
* The *64 IO functions and types are no longer explicitly used.
We now rely on a mapping provided by _FILE_OFFSET_BITS (or its
equivalent).
* _LARGEFILE(64)_SOURCE is no longer exposed via AM_CPPFLAGS.
The CMake files have not yet been updated but CMake is still
functional. The CMake configure files will just run a few
unecessary tests and create unneeded #defines until they are
updated in a few days.
Tested on: Linux, OS X, Solaris, z/OS
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H5Pget_virtual_filename.
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Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial autotools
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Removed extra ';'.
Platform tested
jam (very minor)
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debug
symbols, asserts, profiling, and optimization.
Also much refactoring, improved help, and --enable-<foo> options will
now emit errors on nonsense (e.g.: --enable-foo="asdfasdf").
The libhdf5.settings.in file was also reformatted.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial and parallel autotools w/ various options
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configure
option (also updated CMake).
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial autotools
serial CMake (CMake 3.3.2)
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Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial autotools w/ Fortran
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Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial and parallel autotools
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packages with extra debugging output.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial autotools
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Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial w/ C++
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library.
Buffers that will be written to disk will now always be cleared since
not doing this has huge security implications.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0, x86_64) gcc 5.2.1
serial autotools
parallel autotools (MPICH 3.1.4)
serial CMake
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gnu compiler
is used. The gnu-fflags file was never included.
Tested on ostrich
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Escape quotes in fortran version output to find fortran version for libhdf5.settings
Tested with buildhdf5 on platypus, ostrich, moohan and mayll.
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checks from metadata dxpls
- remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead.
- remove flush_me_collectively flag from cache entries
- add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit.
tested on BB-8 with serial and parallel.
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Tested: platypus.
There are still something strange messages during the configure step.
Waiting for Allen to response.
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I missed changes to a couple of expected error output files with the last
checkin.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
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Normalize against incoming changes from the phdf5_metadata_opt branch.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
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Added c++/test/tarray.cpp.
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Description:
User Adam Rosenberger reported a failure when using the member function
AbstractDs::getArrayType(). This problem was caused by missing
initialization of the ArrayType's members in some cases.
Solution:
- Added ArrayType::setArrayInfo() to retrieve rank and dimensions of
an array and store them in memory for easy access.
- Re-factored a few functions to use the new function.
- We'll give him 1.8.16 patch
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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generated by autogen.sh and were inadvertently added along with configure and Makefile.in files but are not checked in and should not be installed. Furthermore they are not generated on all systems by autogen.sh and cause chkmanifest to fail when run be release scripts.
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Normalize against changes on phdf5_metadata_opt branch to trunk
Tested on:
MacoSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
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files.
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Tested on: linux VM
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Tested on: N/A
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Verified issue with "h5dump tgroup.h5 non_existing.h5"
Applied patch and retested.
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Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools parallel only (MPICH 3.1.4)
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the installation images created for Mac OSX.
The current implementation for Mac OSX platform is a kludge that sometimes left behind mounted volumes.
Temporary screen out the checking of installtion_check step (so that daily test may pass).
Tested: by hand running cmakehdf5 in platypus and osx1010test.
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Bump number of records for random update test again.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
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Restored them to more readable spacing. No code change.
Test: visual inspection.
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Tested on ostrich w/ gcc
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Reset driver info message when superblock load fails.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial
Linux/64 2.6.x (mayll) w/serial
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Switch filter plugin to use H5allocate_memory and H5free_memory instead of
malloc and free.
Tested on:
Linux/32 2.6.x (jam) w/serial
Linux/64 2.6.x (jam) w/serial
MacOSX/64 10.11.2 (amazon) w/serial & parallel
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Reduce asserts on buffer alignment.
Tested on:
Linux/32 & Linux/64 2.6.x (jam & myall) w/serial
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Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial only
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Align internal memory sanity checking buffer, to avoid problems when
optimization is enabled.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial
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Add internal routine to sanity check all blocks allocated through H5MM
interface.
Tested on:
Linux/32 2.6.x (jam) w/serial
Linux/64 2.6.x (mayll) w/serial
MacOSX/64 10.11.2 (amazon) w/serial & parallel
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Switch v2 B-tree min & max records to be void*'s to be cleaner and generate
less warnings.
Tested on:
Linux/32 2.6.x (jam) w/serial
MacOSX/64 10.11.2 (amazon) w/serial & parallel
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Correct another H5MM_free => H5MM_xfree
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
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Correct H5MM_free => H5MM_xfree
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
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Add missing H5MMprivate.h header file
Tested on:
Linux/32 2.6.x (jam) w/serial
MacOSX/64 10.11.2 (amazon) w/serial & parallel
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Clean up another round of memory allocation mis-matches.
Tested on:
Linux/32 2.6.x (jam) w/serial
MacOSX/64 10.11.2 (amazon) w/serial & parallel
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Clean up more memory allocation mis-matches.
Tested on:
Linux/32 2.6.x (jam) w/serial
MacOSX/64 10.11.2 (amazon) w/serial & parallel
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Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial only
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Correct non-portable 'SIZE_T_MAX' to 'SIZET_MAX'.
Tested on:
Linux/32 2.6.x (jam) w/default compilers
(h5committest forthcoming)
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Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial only
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Add --enable-memory-alloc-sanity-check option to configure, to track and
sanity check memory allocations within the library. This is orthogonal to the
--enable-using-memchecker option and can be used with/without it.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
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