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* [svn-r28742] Description:Quincey Koziol2015-12-2912-377/+3089
| | | | | | | | | Add 'update' operation to v2 B-trees, which will insert a new record, or modify an existing one, depending on if the record exists or not. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28730] Snapshot version 1.9 release 233HDF Tester2015-12-286-7/+7
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* [svn-r28723] Description:Quincey Koziol2015-12-226-59/+187
| | | | | | | | | Bring over rest of performance improvements for extending chunked datasets and normalize against revise_chunks branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel) (h5committest forthcoming)
* [svn-r28717] Description:Quincey Koziol2015-12-211-9/+6
| | | | | | | | Minor change to align w/revise_chunks branch Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (too minor for h5committest)
* [svn-r28710] Description:Quincey Koziol2015-12-1912-250/+680
| | | | | | | | | | | | Bring r28708 from revise_chunks branch: Fix earray, farray and btree2 use of incorrect file pointer when two files are opened and used to access the data structure. Misc. minor code cleanups as well. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel h5committest forthcoming
* [svn-r28702] Description:Quincey Koziol2015-12-171-1/+1
| | | | | | | Fix typo in comment. Tested on: (Unneeded)
* [svn-r28696] Minor normalization with revise_chunks.Dana Robinson2015-12-176-110/+106
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28678] Updated the cache_tagging test to correctly output tags inDana Robinson2015-12-161-62/+62
| | | | | | | the debug/verbose function. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28669] Changes to correct errors found with -ansi flag.Larry Knox2015-12-152-5/+3
| | | | | | | | | h5tools_dump.c Removed 3 lines commented out with //. h5_vds-percival-unlim.c Changed C++-style comment to C-style comment. Tested with h5committest.new.
* [svn-r28663] Merge of r28662 from revise_chunks.Dana Robinson2015-12-151-1/+2
| | | | Whitespace only.
* [svn-r28655] Updated MANIFEST :/Dana Robinson2015-12-151-0/+2
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* [svn-r28646] Minor normalization with revise_chunks.Dana Robinson2015-12-1420-57/+11
| | | | | | | | | Also purged obsolete /*ARGSUSED*/ from the library. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28643] Add H5D_t pointer to chunk callback.Dana Robinson2015-12-143-8/+9
| | | | | | | | | Normalization for future single chunk indexing. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28638] HDFFV-9273: cmakehdf5 --script failed in linux platypusAlbert Cheng2015-12-141-266/+0
| | | | | | Solution: remove --script option from cmakehdf5. Tested: platypus
* [svn-r28629] Minor normalization with revise_chunks.Dana Robinson2015-12-143-24/+18
| | | | | | | Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28626] Brought VFD-level file locking code over from revise_chunks.Dana Robinson2015-12-1411-45/+720
| | | | | | | Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28624] Minor normalization of H5FA package with revise_chunks.Dana Robinson2015-12-1410-427/+417
| | | | | | | Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28620] Minor normalization of H5HL package with revise_chunks.Dana Robinson2015-12-142-6/+7
| | | | | | | Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28616] Normalization of H5HL package with revise_chunks.Dana Robinson2015-12-1411-924/+1028
| | | | | | | | | NOTE: Flush dependency code was not moved. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 w/ CMake 3.3.2 serial only (Autotools and CMake since new files were added) (these changes have been in revise_chunks for a long time)
* [svn-r28614] Normalization of H5FS package with revise_chunks.Dana Robinson2015-12-149-477/+395
| | | | | | | | | Mostly minor fixes like warnings, etc. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28612] Normalization of H5G package with revise_chunks.Dana Robinson2015-12-148-23/+25
| | | | | | | | | Mostly minor fixes like warnings, etc. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28606] Description:Quincey Koziol2015-12-1325-273/+270
| | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28599] Normalization of tools with revise_chunks.Dana Robinson2015-12-1116-278/+249
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only, autotools and CMake (3.3.2)
* [svn-r28581] Brought flock changes over from revise_chunks as well as a fewDana Robinson2015-12-116-5/+197
| | | | | | | minor tweaks from H5private.h. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only, autotools and CMake (3.3.2)
* [svn-r28577] Normalize test/th5o.c with revise_chunks.Dana Robinson2015-12-111-0/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28575] Normalize test/file_image.c with revise_chunks.Dana Robinson2015-12-111-29/+68
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28573] Merge of r28109 from revise_chunks. Minor change to test/vds.c.Dana Robinson2015-12-111-3/+3
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28570] Normalization of test/lheap.c with revise_chunks.Dana Robinson2015-12-111-49/+52
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28568] Normalization of test/big.c with revise_chunks.Dana Robinson2015-12-111-8/+8
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28565] Normalization of bin/trace with revise_chunks in preparationDana Robinson2015-12-111-0/+4
| | | | | | | for merge. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) bin/trace run only
* [svn-r28563] HDFFV-9612: added ability to run multiple make commands.Albert Cheng2015-12-101-3/+18
| | | | | | | Added --njobs option to special number of jobs (-j N) to allow multiple commands during build (cmamke) and testing (ctest). Tested: platypus.
* [svn-r28555] Normalization of Fortran directory with revise_chunks (minor).Dana Robinson2015-12-101-0/+8
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial, with and without the direct VFD enabled
* [svn-r28553] Merge of r28436 from revise_chunks. Cleans up warnings exposedDana Robinson2015-12-105-228/+244
| | | | | | | by gcc 5.2 in the flex/bison code. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28538] Merge of r28479 from revise_chunks.Dana Robinson2015-12-081-16/+17
| | | | | | | | Fixes OS X compilation problems and brings some Linux symbols in line with the Autotools when building with CMake. Tested on: 64-bit OS X 10.11.1 El Capitan (Darwin 15.0.0) Xcode 7.1 Apple LLVM 7.0.0 (clang-700.1.76)
* [svn-r28533] Fix loops in H5Dvirtual.c to only loop over used entries in VDS ↵Neil Fortner2015-12-071-3/+3
| | | | | | | | mapping list, instead of all allocated entries. Tested: ummon (too minor for full h5committest)
* [svn-r28499] Correct working dirAllen Byrne2015-12-031-1/+1
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* [svn-r28497] Avoid race condition on creating same source file.Allen Byrne2015-12-031-4/+21
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* [svn-r28488] Removed second argument from AC_CHECK_SIZEOF() in configure.ac. ↵Dana Robinson2015-12-031-44/+44
| | | | | | | | This is no longer needed for cross compiling and is ignored. Tested on: h5committest
* [svn-r28467] Removed commented-out tests from the list of simple tests. They ↵Dana Robinson2015-11-301-8/+0
| | | | | | are handled in the additional tests section, below the list. Tested on 64-bit Windows 10 w/ VS2015 and CMake 3.3.1.
* [svn-r28463] Merge of -r28460 from revise_chunks. Removes -std=c99 fromDana Robinson2015-11-241-2/+2
| | | | | | | C++ flags under CMake. Tested on: Ubuntu 15.10 (x86_64 Linux 4.2.0) gcc 5.2.1, CMake 3.3.2
* [svn-r28452] Description:Quincey Koziol2015-11-2315-65/+60
| | | | | | | | Normalization changes against revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28422] Description:Quincey Koziol2015-11-2024-419/+584
| | | | | | | | | | Revert most of r27549, since revise_chunks code requires debugging contexts for v2 B-trees. Also, misc. warning cleanups and alignments w/changes on revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28416] Description:Quincey Koziol2015-11-203-67/+76
| | | | | | | | | Refactor time conversion code to put all the system-specific changes into one routine, H5_make_time, in H5system.c. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28403] Update to include cdash submit optionsAllen Byrne2015-11-192-0/+18
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* [svn-r28397] Add note about the "H5_BUILT_AS_DYNAMIC_LIB" compile definitionAllen Byrne2015-11-182-22/+27
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* [svn-r28393] HDFFV-9573: bin/h5vers failure, claiming reconfigure failed.Albert Cheng2015-11-181-3/+3
| | | | | | | | bin/reconfigure is replaced by autogen.sh. Fixed h5vers to call autogen.sh instead. Tested: Jam
* [svn-r28388] HDFFV-9573: bin/chkmanifest did not like the missing generated ↵Albert Cheng2015-11-181-0/+16
| | | | | | | | file. Changed bin/chkmanifest to generate the files if configure is missing. Tested: jam
* [svn-r28377] CMake 3.4 policy changeAllen Byrne2015-11-171-24/+24
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* [svn-r28373] HDFFV-9573: Our helper tests bin/release and bin/h5vers are not ↵Albert Cheng2015-11-171-0/+68
| | | | | | | | | | working properly bin/release uses the content of MANIFEST file to build the release tarball. But all the files generated by autogen had been removed. Therefore the release would not contain those needed generated files for a proper release. Solution: Added all those generated files to the tail of MANIFEST and titled it accordingly. (Somehow bin/chkmanifest does not complain against these entries though they are not svn managed. This needs further investigation.) Test: bin/release generated the release tarball in jam, then use it in Platypus to do a full build (--enable-fortran --enable-cxx). All passed.
* [svn-r28371] Update script mode order of commandsAllen Byrne2015-11-171-135/+140
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