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* [svn-r26782] Remove md5 from METHODS arguments for calling bin/release ↵Larry Knox2015-04-121-2/+2
| | | | script from snapshot script. md5 method was removed and md5 checksums are always produced for all compression methods.
* [svn-r26778] fix path to configAllen Byrne2015-04-101-2/+2
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* [svn-r26777] - Fix usage of the internal AC global dxplsMohamad Chaarawi2015-04-1018-250/+259
| | | | | | - allocate sieve buffer with calloc instead of malloc tested with h5committest
* [svn-r26776] Add missing quote char.Allen Byrne2015-04-101-1/+1
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* [svn-r26772] Fixed wrong fapl for H5Fopen when testing H5Iget_name with ↵Scot Breitenfeld2015-04-091-1/+1
| | | | | | anonymously created datatype. Tested: jam (using split virtual driver)
* [svn-r26771] - remove unused internal dxpl properties and property lists ↵Mohamad Chaarawi2015-04-082-111/+30
| | | | | | | | from the AC layer - fix warnings in H5AC.c tested with h5committest
* [svn-r26767] Added test to address HDFFV-3065:Scot Breitenfeld2015-04-081-2/+57
| | | | | | H5Iget_name on datatype that is not named returns no error Tested: h5committest
* [svn-r26757] Description:Quincey Koziol2015-04-077-79/+64
| | | | | | | | Minor typos & code cleanups Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r26751] Updated.Albert Cheng2015-04-071-1/+0
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* [svn-r26750] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in ↵Albert Cheng2015-04-078-25759/+14
| | | | | | | | | compound type. Added the testing to h5repack where it belongs. Undo the tests added to h5dump. Tested: h5committested plus tested in jam by hand.
* [svn-r26746] install_parallel updates.Mohamad Chaarawi2015-04-071-118/+1
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* [svn-r26737] Purpose: Fix daily test failureBinh-Minh Ribler2015-04-063-8/+14
| | | | | | | | | | | | | | Description: - In DataType::DataType(const PredType& pred_type), using DataType::copy will invoke DataType::close() unnecessarily, which will produce undefined behavior. Changed to call H5Tcopy directly, code reuse is not useful in this case. - Also, fixed CommonFG::childObjVersion to return expected value outside of an if/else block. Platforms tested: Linux/ppc64 (ostrich) Linux/64 (platypus) Linux/32 2.6 (jam)
* [svn-r26721] Disable failing testAllen Byrne2015-04-031-1/+1
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* [svn-r26719] Add HL to default componentsAllen Byrne2015-04-031-1/+1
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* [svn-r26712] Bug fix: cmakehdf5 broken because zlib is no longer configure ↵Albert Cheng2015-04-021-0/+11
| | | | | | | | | | | | | | in by default. That broke the testings as some testfiles have zlib compressed datasets. Added options control to enable the linking of zlib external libarary by default and turn off the szip library linking as szip library may not be avaiable. This matches the established settings. Tested: run cmakehdf5 by hand in jam and platypus. Also tested in wren but it failed in the testing stage. Also tried "cmakehdf5 --script" in jam. It failed.
* [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and ↵Larry Knox2015-04-0247-204/+6
| | | | | | | | redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths. Tested with h5committest.
* [svn-r26702] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in ↵Albert Cheng2015-04-011-3/+16
| | | | | | | | | | | | | compound type. Description: The test added failed in some machines because the data file contains infinity values that different machines print them differently as "inf", "INF", "Inf", ... Solution: Added a "ignorecase" option to TOOLTEST() to do caseless matching between generated output vs expected output. This solved most machines problem for now. Tested: h5committest, emu by hand for both development and production modes. But cmake built h5dump failed to read the data file. Using the same source to build h5dump by autotools produced a h5dump that can read the test data file. Don't know why cmake could not produce a correct binary.
* [svn-r26699] Generators are only built staticAllen Byrne2015-04-0110-21/+21
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* [svn-r26695] Purpose: Fixed HDFFV-7947 (cont.)Binh-Minh Ribler2015-04-018-29/+9
| | | | | | | | | | | | Description: - Put back the UNUSED parameters in dsets test because the change to remove the warning last time caused failure in setting filter, in turn, caused failure in the test with such obscure/unrelated errors! - Added incRefCount() to other constructors that missed from last time. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r26693] Remove use of obsolete HDF5_USE_FILTER_{internal}Allen Byrne2015-04-013-98/+22
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* [svn-r26691] Move attribute define out of dynamic block.Allen Byrne2015-04-011-3/+3
| | | | Tested: windows
* [svn-r26690] Fix error in H5Sextent_copyNeil Fortner2015-04-012-0/+34
| | | | | | | | When the selection is set to all, H5Sextent_copy did not update the number of elements in the selection in the destination space. Fixed H5Sextent_copy to do this. Added tests for this functionality. Tested: jam, koala, ostrich (h5committest)
* [svn-r26685] Add new test from test scriptAllen Byrne2015-03-311-1/+19
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* [svn-r26683] Remove internal filter checksAllen Byrne2015-03-312-33/+17
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* [svn-r26682] Add new test from test scriptAllen Byrne2015-03-311-0/+3
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* [svn-r26678] add ifdef checks and setting for __attribute__ in a public ↵Mohamad Chaarawi2015-03-313-6/+10
| | | | | | place to allow usage in public routines.
* [svn-r26677] HDFFV-8957: h52gif crashes when run against one of our own ↵Albert Cheng2015-03-316-1/+25760
| | | | | | | | | | | | | | | | examples The tool claimed it could handle 24bit images but there was no code to handle it. (or might be there were but was removed by previous revisions.) Also discovered that it does not accept multiple images nor -p for palette as its user document and online help message indicated. Solution: Added code to verify dimension sizes are within 8 bit raster images limit and added tests to verify the tools correctness. Need to update user document tool. Tested: h5committested.
* [svn-r26675] HDFFV-9201: Create md5s for bzip, gzip and zip filesAlbert Cheng2015-03-311-11/+15
| | | | | | An md5 checksum is produced for each archive created and stored in the md5 file Tested: jam by hand.
* [svn-r26671] Since cmake always redoes everything from start, I change the ↵Albert Cheng2015-03-311-1/+1
| | | | | | | | logfiles to start fresh everytime. Tested: platypus
* [svn-r26670] Remove VPATH and LONE_COLONLarry Knox2015-03-313-120/+1
| | | | Tested with h5committest
* [svn-r26669] Remove code to prevent duplicate includes of /usr/include and ↵Larry Knox2015-03-301-45/+0
| | | | | | /usr/lib. Tested h5committest
* [svn-r26667] Purpose: Fixed HDFFV-8766Binh-Minh Ribler2015-03-303-0/+56
| | | | | | | | | | | | Description: Per user Jason Newton request, the following constructor is added: H5File(hid_t existing_id); Also, fixed H5File::openFile to close current file first before re-using the object. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam gnu and Intel 15.0) SunOS 5.11 (emu)
* [svn-r26665] Description:Frank Baker2015-03-301-1/+1
| | | | Update HDF Group copyright dates to include 2015.
* [svn-r26662] added option to configure support for fortran2003 API.Albert Cheng2015-03-301-1/+12
| | | | | | | --enable-fortran2003 | --disable-fortran2003: enable or disable fortran2003 API. Default is off. Tested: by hand in platypus.
* [svn-r26660] HDFFV-9131: autotols reworkAllen Byrne2015-03-3046-643/+58
| | | | | | | Remove CXX_CONDITIONAL remove unneeded/obsolete sections. h5commtitest
* [svn-r26657] Fix for HDFFV09202.Scot Breitenfeld2015-03-302-6/+21
| | | | | | | HDFFV-9202 subroutine VERIFY() fails when checking 8 byte integers in fortran tests Tested: jam( --enable-fortran2003, gnu) koala (--enable-fortran2003, intel)
* [svn-r26655] Purpose: Fixed HDFFV-7947Binh-Minh Ribler2015-03-3021-71/+220
| | | | | | | | | | | | | | | | | | | | | | | | | | Description: When copy constructor or constructor that takes an existing id is invoked, the C ref counter stays the same but there is an extra C++ object which later is destroyed and may cause the HDF5 id to be closed prematurely. The C++ library needs to increment the ref counter in these situations, so that the C library will not close the id when it is still being referenced. However, the incrementing of ref count left some objects opened at the end of the program, perhaps, due to compiler's optimization on cons/destructors. The constructor, that takes an existing id, needs to increment the counter but it seems that the matching destructor wasn't invoked. The workaround is to have a function for each class that has "id" that only sets the id and not increment the ref count for the library to use in these situations. These functions are "friend" and not public. The friend functions are: void f_Attribute_setId(Attribute *, hid_t) void f_DataSet_setId(DataSet *, hid_t) void f_DataSpace_setId(DataSpace *, hid_t) void f_DataType_setId(DataType *, hid_t) Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam gnu and Intel 15.0) SunOS 5.11 (emu)
* [svn-r26653] Update default settingsAllen Byrne2015-03-302-6/+6
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* [svn-r26652] Update default settingsAllen Byrne2015-03-301-5/+4
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* [svn-r26650] move size_t cast from define of HG_ALIGN to usage of HG_ALIGN.Mohamad Chaarawi2015-03-301-10/+9
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* [svn-r26649] squish warnings.Mohamad Chaarawi2015-03-3013-75/+74
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* [svn-r26647] Description:Quincey Koziol2015-03-302-49/+69
| | | | | | | | | | Bring r26639 from autotools_rework branch to trunk: Switch AC_TRY_RUN macros to AC_RUN_IFELSE macros. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26646] Bug fix: HDFFV-8957 h52gif crashes when run against one of our ↵Albert Cheng2015-03-305-25/+71
| | | | | | | | | | | | | | | | | | own examples. Description: h52gif crashed when it was asked to convert a 24bitimage. Upon viewing the code, it did not prepare to handle images other than 2 dimensions. It has no concept of multiple planes images. Further examinations showed past attempts to fix it ended up removed some abilities (-p or multiple planes, animation, ...) have been removed but documentation was not updated. Even its online help message still shows -p is an option. Solution: added protection code to flag errors if input request is not an 8bit image within size limits. (I don't have enough knowledge of the GIF format to fix this tool. All I did was plugging known bug from crashing the program.) Tested: h5committest.
* [svn-r26645] Revert the part of revision 26642 that is in fortran/test and ↵Larry Knox2015-03-302-10/+12
| | | | | | | | | | causes the error "undefined reference to `verify_fortran_integer_4_". files: tH5P_F03.f90 tf.f90 Tested: h5committest and several failed daily tests.
* [svn-r26643] Purpose: Adding new wrappers (HDFFR-9167 partially)Binh-Minh Ribler2015-03-297-2/+256
| | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for C functions H5P[s/g]et_libver_bounds and wrappers for getting object header version // Sets bounds on versions of library format to be used when creating // or writing objects. void setLibverBounds(H5F_libver_t libver_low, H5F_libver_t libver_high) const; // Gets the current settings for the library version format bounds. void getLibverBounds(H5F_libver_t& libver_low, H5F_libver_t& libver_high) const; // Returns the object header version of an object in a file or group, // given the object's name. unsigned childObjVersion(const char* objname) const; unsigned childObjVersion(const H5std_string& objname) const; Platforms tested: Linux/64 (platypus) Linux/32 2.6 SunOS 5.11
* [svn-r26642] Fix for HDFFV09202 and HDFFV-9171.Scot Breitenfeld2015-03-286-16/+184
| | | | | | | HDFFV-9171 Configure mistakes Cray Compilers for Intel Compilers, HDFFV-9202 subroutine VERIFY() fails when checking 8 byte integers in fortran tests Tested: h5committest
* [svn-r26640] Purpose: Fix bugsBinh-Minh Ribler2015-03-285-7/+54
| | | | | | | | | | | | | | | | | Description: - Changed DataType::operator= to simply copy the id of rhs instead of calling H5Tcopy because, when the operator= is invoked, a different datatype id is created and it won't have the same characteristics as rhs', specifically, if the rhs represents a named datatype, "this" would still be a transient datatype. - Added a DataType constructor that takes a PredType object, and this constructor will cause H5Tcopy to generate another datatype id, from a predefined datatype. - Fixed various mistakes in tests. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam/gnu and jam/icc 15) SunOS 5.11 (emu development/production)
* [svn-r26635] Description:Quincey Koziol2015-03-288-201/+6
| | | | | | | | | | | Bring r26651 from autotools_rework branch to trunk: Remove the VSNPRINTF_WORKS macro, it's working around bugs in old SGI & HP compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26634] Description:Quincey Koziol2015-03-271-6/+0
| | | | | | | | | | Bring r26550 from autotools_rework branch to trunk: Remove orphaned macro definitions (not attached to anything in the library) Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26633] Add -D_DEFAULT_SOURCE to CPPFLAGS on Linux systems. ↵Neil Fortner2015-03-272-0/+10
| | | | | | | | | | -D_BSD_SOURCE is deprecated in recent versions of glibc, and -D_DEFAULT_SOURCE is the replacement. Keep -D_BSD_SOURCE for now to support older systems. gcc will not issue a warning about -D_BSD_SOURCE being deprecated when -D_DEFAULT_SOURCE is supplied as well. Tested: jam, koala, ostrich (h5committest)
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