| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix.
Description:
The return value of TestPrivateParser() was not tested, thus program
would keep on going incorrectly even if errors were detected in
TestPrivateParser.
Solution:
Check the return and exit accordingly.
Platforms tested:
Tested in Eirene and Sol in both serial and pp modes.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
new test
Description:
added a test that generates and copies a file with a dataset with fill value
(this is to test the property list function H5Pequal)
Solution:
Platforms tested:
linux
solaris
aix
Misc. update:
|
| |
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
The private function p_close was removed previously, but I
inadvertently put it back in a few places, while transferring
the changes from 1.6 branch. These are removed now.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
bug fix.
Description:
The test routines only print error messages but not all of them
return number of errors detected back to the main routine which
always exit with a 0 status. Thus make or shell commands could
not detect there were errors.
Solution:
Changed the test routines to return appropriate number of
errors to main routine which in turn exit with the appropriate
exit code if errors found.
Platforms tested:
Tested in Sol and eirene (pp).
Misc. update:
|
|
|
|
|
|
|
|
|
|
| |
Description:
Updated various function headers for the RM as reviewing progresses.
Rearranged functions in header files for more sensible look of the RM.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
|
|
|
|
|
|
|
|
|
| |
Description:
Renamed some private members and member functions appropriately.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Added wrappers for H5Fget_name:
H5File::getFileName
H5Object::getFileName
Moved some functions from Group into the base class CommonFG for
H5File too.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
|
|
|
|
|
|
|
|
|
|
| |
Description
Added the rest of the C++ examples to the RM.
Platforms tested:
Verified on Windows
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
| |
Description: Added PGI Fortran support for Linux64 systems (x86_64)
Solution:
Platforms tested: AMD Opteron box at AMD Sunnyvale and verbena
with PGI and gcc compilers.
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Update.
Description:
Minor update on hdf5check.bat.
Solution:
Platforms tested:
Windows 2000/XP.
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
new feature
Description:
added a check that the chunk size must be smaller than pixels per block in SZIP request
prints a message and exits, if not met
Solution:
Platforms tested:
linux
aix
solaris
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Fix to config for ia64-linux (C++)
Description:
missing character in config file
Solution:
add the missing character
Platforms tested:
'hal'
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
| |
Description: In H5O_fill_new_decode and H5O_fill_new_encode, UINT32DECODE and
UINT32ENCODE were used to decode and encode message size, which is ssize_t.
Solution: Change to INT32DECODE and INT32ENCODE.
Platforms tested: fuss - very simple change.
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
feature
Description:
Another revamp of the test interface.
TestInit: is used to register Test Program name, test program specific
Usage and option parsing routines.
TestUsage: will invoke extra usage routine if provided.
TestParseCmdLine: will invoke extra option parsing routine if provided.
GetTestSummary() and GetTestCleanup() replaces the previous Summary and
CleanUp arguments of TestParseCmdLine.
test/testhdf5, test/ttsafe.c, testpar/t_mpi.c, testpar/testphdf5.c:
All have been updated to use the new Test Routines.
testpar/t_mpi.c:
Also a fix of a compiler optimization bug when pgcc in Linux is
used to compile it. Changed buf[] and expected to unsigned char
type to avoid a bug that failed to do sign-extension.
Platforms tested:
"h5committested"
Also tested thread-safe option in eirene.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Update.
Description:
Make some minor change so that h5jamgentest.c is compatible with Windows.
Solution:
Change open() and write() functions to HDopen(), and HDwrite().
Platforms tested:
Windows 2000
Windows XP
eirene
(Note: I talked with Bob and Kent about these changes before check-in)
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Update.
Description:
Make some minor change so that tellub.c is compatible with Windows.
Solution:
1. unistd.h is not available in windows system. Add a macro for this header file as:
#ifdef H5_HAVE_UNISTD_H
#include <unistd.h>
#endif
2. Change open, read, write, lseek functions to HDopen, HDread, HDwrite, and HDlseek,
as these HD functions are more comtatible with Windows system.
3. add #include H5private.h
4. remove #include <stdlib.h>
Platforms tested:
Windows 2000
Windows XP
eirene
(Note: I talked with Bob and Kent about these changes before check-in)
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Update.
Description:
Make some minor change so that h5jam.c is compatible with Windows.
Solution:
1. unistd.h is not available in windows system. Add a macro for this header file as:
#ifdef H5_HAVE_UNISTD_H
#include <unistd.h>
#endif
2. Change open, read, write, lseek functions to HDopen, HDread, HDwrite, and HDlseek,
as these HD functions are more comtatible with Windows system.
3. add #include H5private.h
4. remove #include <stdlib.h>
Platforms tested:
Windows 2000
Windows XP
eirene
(Note: I talked with Bob and Kent about these changes before check-in)
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Update.
Description:
Make some minor change so that h5jam.c is compatible with Windows.
Solution:
1. unistd.h is not available in windows system. Add a macro for this header file as:
#ifdef H5_HAVE_UNISTD_H
#include <unistd.h>
#endif
2. Change open, read, write, lseek functions to HDopen, HDread, HDwrite, and HDlseek,
as these HD functions are more comtatible with Windows system.
3. add #include H5private.h
4. remove #include <stdlib.h>
Platforms tested:
Windows 2000
Windows XP
eirene
(Note: I talked with Bob and Kent about these changes before check-in)
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Update.
Description:
Add h5jam and h5unjam tools into Windows workspace.
Solution:
1. Add h5jam project in hdf5\tools\ directory, which includes hdf5\tools\h5jam\h5jam.c
2. Add h5unjam project in hdf5\tools\ directory, which includes hdf5\tools\h5jam\h5unjam.c
3. Add h5jamtst project in hdf5\tools\testfiles\ directory, which includes hdf5\tools\h5jam\h5jamgentest.c
4. Add getub project in hdf5\test\ directory, which includes hdf5\tools\h5jam\genub.c
5. Add tellub project in hdf5\test\ directory, which includes hdf5\tools\h5jam\tellub.c
Platforms tested:
Visual C++ 6.0 on Windows 2000/XP and .NET on XP.
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
| |
Description: In H5O_fill_new_decode, it tries to read message size(-1) when
fill value is undefined for version 1. During UINT32DECODE, if the machine is
64-bit, a value 0x00000000ffffffff is returned, which is like a valid value.
Solution: If fill value is undefined, don't read the message size, simply
assign -1 to it.
Platforms tested: fuss - did h5committest for v1.6 already.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
bug fix
Description:
the option CHUNK:NONE (remove chunking ) was not setting the layout to contiguous
Solution:
Platforms tested:
linux
solaris
AIX
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Purpose:
bug fix
Description:
1. The IF-block of skipping collective chunk IO tests when the number of
processes is greater than some number essentially skipped all parallel tests.
2. John tested at copper with the number of processor = 64 and collective
chunk IO tests passed, so we increase the number of precessor =24 to 64 for
skipping the test.
Solution:
1. change the IF block flow so that it only skips collective chunk IO tests when
the number of process is greater than 64.
Platforms tested:
copper(only change a bit of parallel test code, no needs to test on other platforms).
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
1 - Dataset contiguous storage cache information had a bug where it was
possible to try to access invalid cache information if the cache wasn't filled
the first time it attempted to loop through the list of offset/length vectors.
2 - Additionally, the contiguous storage cache information was being used
in certain circumstances from the chunked dataset I/O code path, which was
generally fatal since the chunk storage and contiguous storage information
were stored together in a union.
Solution:
1 - Avoid special case of first trip through loop over offset/length
I/O vectors and always check for the contiguous storage sieve buffer buffer
being NULL.
2 - Change the union containing the chunk and contiguous storage cache
information into a struct, allowing both to be used at the same time.
Platforms tested:
FreeBSD 4.10 (sleipnir)
h5committested
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
The examples would compile even if some header file were not
installed. That was because the CPPFLAGS has -I... components
that included the src directories.
Solution:
The h5cc or h5pcc commands should have all the necessarily
library include directories covered. Changed CPPFLAGS to
search only the examples source directory for local header
files.
Platforms tested:
No h5committest tests which do not check examples.
Hand tested it in sol.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
New Feature.
Description:
Add two new batch files for HDF5 building and testing on Windows.
Solution:
1. Add hdf5build.bat: build hdf5 from command line, which has four opitions:
hdf5build build c library and tools only
hdf5build enablecpp build c/c++ libraries and tools
hdf5build enablefortran build c/fortran libraries and tools
hdf5build enableall build c/c++/fortran libraries and tools
2. Add hdf5bt.bat: this batch file calls hdf5build.bat and hdf5check.bat to
build and test hdf5 from command line. It also has four options:
hdf5bt build and test c library and tools only
hdf5bt enablecpp build and test c/c++ libraries and tools
hdf5bt enablefortran build and test c/fortran libraries and tools
hdf5bt enableall build and test c/c++/fortran libraries and tools
Platforms tested:
Windows 2000/XP.
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
New Feature.
Description:
Add several new batch files for hdf5 windows tests.
Solution:
1. Add install_dll.bat: copy hdf5 dlls to windows system directory.
2. Add install_cppdll.bat: copy hdf5 cpp dlls to windows system directory.
3. Add install_f90dll.bat: copy hdf5 fortran dlls to windows system directory.
4. Add hdf5check.bat: test hdf5 from command line, which has four opitions:
hdf5check test c library and tools only
hdf5check enablecpp test c/c++ libraries and tools
hdf5check enablefortran test c/fortran libraries and tools
hdf5check enableall test c/c++/fortran libraries and tools
5. Update testhdf5tools, dumptest, difftest, lstest, importest, repacktest.
Platforms tested:
Windows 2000/XP.
Misc. update:
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Feature
Description:
Added --private option which is for individuals making a private
release version. It sets the SubRelease string to the date of
release. This should be sufficient to distinguish releases
provided one does not make two private releases on the same
day.
Platforms tested:
No h5committest since it does not test this feature.
Hand tested it in Eirene.
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Updated it to use the new TestParseCmdLine() syntax.
Platforms tested:
"h5committested" and in eirene with threadsafe enabled.
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Added an argument to the call to TestParseCmdLine because its
prototype has just been changed.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
|
|
|
|
|
|
|
|
|
|
| |
Feature
Description:
Updated to use the new syntax of TestParseCmdLine().
Platforms tested:
On eirene both serial and parallel.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Feature
Description:
Changed TestParseCmdLine to accept an optional extra_parse()
function provided by indidivual test application. Extra_parse()
can handle extra options special to that test application.
Updated testhdf5.c to use the new syntax of TestParseCmdLine().
Platforms tested:
On eirene both serial and parallel.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Correction of the previous check.
Description:
forget moving "debug #if macro" out of this file.
Solution:
remove that "#if 0 #endif" macro block.
Platforms tested:
Compile at eirene
Too trivial to test
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Better collective chunk IO test arrangements
Description:
collective chunk IO tests have been verified with the number of process greater than 24 and
the test is very slow with big number of process.
That may cause confusions to users who run collective chunk IO tests.
Solution:
To avoid possible confusions, A if-block will be used to check whether the number of process
is greater than 24. If yes, the collective chunk tests will be skipped and a message will be printed out.
Platforms tested:
linux 2.4
(too trivial to use h5committest)
Misc. update:
|
|
|
|
|
|
|
|
|
|
| |
Description: The test tried to read a dataset of H5T_STD_I32LE type and verify with the size
of H5T_NATIVE_INT in function test_misc20(). This will fail on some machines like Crays where the
size of H5T_NATIVE_INT is 8 bytes.
Solution: Changed from H5T_NATIVE_INT to H5T_STD_I32LE.
Platforms tested: Crays - very simple change.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Make collective chunk IO test more general
Description:
Previously collective chunk IO test is only fit for processor =4 with
the dimension size to be set small; sometimes people would like to test
with more than 4 processors(5,6 or more), the test therefore failed.
Solution:
To make the test case more general, dimensional size of the data is set to be large(right now 288 for each dimension), the disjoint hyperslab selection is re-calculated. Now the test cases should pass with 5,6 or 12 processors. Note, there is nothing wrong with the implementation of the library, it is the test case that causes the failure with the number of processor greater than 4.
Platforms tested:
Only at eirene, since only the test code is modified a little and it is very slow to test the parallel case.
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Update.
Description:
Binh-Minh checked in two new c++ source codes and two new head files.
Add these files to Windows projects.
Solution:
Add H5VarlenType.cpp, H5VarlenType.h, H5ArrayType.cpp, and H5ArrayType.h
to hdf5_cpp and hdf5_cppdll projects in Windows.
Platforms tested:
Visual C++ 6.0 on Windows XP/2000.
(will test with .NET on XP after this check-in).
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Cleanup and bug fix.
Description:
Bug fix:
the checking of dobig test was done in the wrong place
such that tests added after it would be run even for the -b option.
Moved the dobig test checking to AFTER all tests are added.
Cleanup:
Removed old code now that the new way is working fine.
Platforms tested:
Tested in Eirene parallel only.
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug. See other checkin.
Description:
Solution:
Platforms tested:
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
| |
Improvement and fix.
Description:
Improvement: allow user defined RUNSERIAL and RUNPARALLEL settings.
Added hdf5_cv_gettimeofday_tz cached value.
Platforms tested:
Janus (Tflops).
|
|
|
|
|
|
|
|
|
|
|
|
| |
remove the line with all_withf90.zip.
Description:
Solution:
Platforms tested:
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
| |
windows fortran projects are merged to all.zip. all_withf90.zip is no longer needed.
Description:
Solution:
Platforms tested:
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Purpose:
Bug fix
Description:
Fixed gettimeofday configure test to use cache values
Platforms tested:
copper, arabica, verbena, sleipnir
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Correct possible core dump when a datatype conversion function is
registered with the library after a compound datatype has been converted
(having it's type conversion information cached by the library). The compound
datatype must have been created by inserting the fields in non-increasing
offset order to see the bug.
Solution:
Re-sort the fields in the compound datatypes before recalculating the
cached information when performing the conversion on them.
Platforms tested:
FreeBSD 4.10 (sleipnir)
h5committested
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Feature
Description:
Added a feature such that if the test name starts with '-', do not run it
by default.
Platforms tested:
Eirene both serial and parallel.
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Removed private functions p_close, that were left over from the
removal of the reference counting mechanism.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
release_docs/RELEASE will be updated soon.
|
|
|
|
|
|
|
|
|
|
|
|
| |
Add new files
Description:
Added H5VarLenType.cpp and H5ArrayType.cpp to LIB_SRC
Added H5CppDoc.h, H5VarLenType.h, and H5ArrayType.h to PUB_HDR
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
|
|
|
|
|
| |
Description
Added file c++/src/H5CppDoc.h.
|