summaryrefslogtreecommitdiffstats
Commit message (Collapse)AuthorAgeFilesLines
* [svn-r17649] Description:Quincey Koziol2009-10-1511-1251/+1245
| | | | | | | | | | | | | | | | | | | | | | Refactor v2 B-trees to pin the B-tree header in the cache instead of using separate reference counted data structure. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17647] Maintenance: Configure didn't cleanup Fortran module file; fixed.Elena Pourmal2009-10-152-3/+3
| | | | | | | Platforms tested: jam (trivial change) Note: Most of the Fortran compilers create module files with "mod" extension. In the past, I believe, there were systems (Cray?) that used different extensions. We should add those to the current fix when we find them.
* [svn-r17646] 1. tools/h5repack/h5repack_main.c: accept string for strategy ↵Vailin Choi2009-10-158-202/+379
| | | | | | | | | | | | | | | | | | instead of a number 2. tools/h5stat/h5stat.c: clean up and activate options as stated in usage 3. tools/h5stat/testfiles/*.ddl: modified according to the latest output -This line, and those below, will be ignored-- M tools/h5repack/h5repack_main.c M tools/h5stat/testfiles/h5stat_newgrat.ddl M tools/h5stat/testfiles/h5stat_filters.ddl M tools/h5stat/testfiles/h5stat_help1.ddl M tools/h5stat/testfiles/h5stat_help2.ddl M tools/h5stat/testfiles/h5stat_tsohm.ddl M tools/h5stat/testfiles/h5stat_filters-F.ddl M tools/h5stat/h5stat.c
* [svn-r17644] Maintenance: Removed duplicated entry for socket library. It ↵Elena Pourmal2009-10-151-4/+3
| | | | | | | | | | was there for stream VFD. -lsocket is still used for linking, but it is added by libtool and not by us. Set up debug flags for Fortran. Platforms tested: linew 32 and 64-bit.
* [svn-r17643] Purpose:Mike McGreevy2009-10-144-76/+74
| | | | | | | | | | | | | | | | | | | Configure / Config File Fixes Description: 1. Made AM_CPPFLAGS assignments in configure a bit safer. (i.e., check to ensure include paths exist before adding them to AM_CPPFLAGS). 2. Change AIX config file to add -D_LARGE_FILES into AM_CXXFLAGS instead of H5_CXXFLAGS (same with *_CFLAGS). This will propagate it into h5c++, where it is needed to compile correctly. 3. Added missing line containing AM_CFLAGS to configure output summary. Tested: h5committest, and uP (AIX machine, via Albert).
* [svn-r17639] Purpose:Mike McGreevy2009-10-133-28/+46
| | | | | | | | | | | | | | | | | | | | | | | | | | Configure Fix Description: uP (AIX Machine) was failing because configure needs to see -k flag in FCFLAGS for some checks to behave as intended. Since the config files were switched to passing all flags into H5_FCCFLAGS, this broke this behavior. To allow configure to see this again, FCFLAGS and all other user flags are saved before doing anything, and restored at the end of configure, so if needed we can set these values in configure and/or the config/ files without (permanently) overriding or changing anything a user sets. Also modified the powerpc-ibm-aix5.x config file to once again put -k into FCFLAGS in addition to H5_FCFLAGS (the former of which will be restored after configure completes the checks). Tested: h5committest (jam and amani finished, linew still running, though I wanted to get this in for daily tests since it needs to be run on uP for final verification).
* [svn-r17636] Maintenance: Changed default fortran compiler for Mac Intel to ↵Elena Pourmal2009-10-131-46/+23
| | | | | | | | | | | gfortran Cleaned up the file to be inline with other config files that use multiple compilers. Platforms tested: My Mac pahra with gfortran, ifort and g95
* [svn-r17635] Bug 1192:Albert Cheng2009-10-131-0/+30
| | | | | | | Added EXIT_SUCEESS and EXIT_FAILURE macro values test. Tested: h5committested.
* [svn-r17631] Removed vnet assignments and allow default /vs8 and /ivf91 on ↵Allen Byrne2009-10-122-46/+41
| | | | | | command line. Tested: windows
* [svn-r17628] Snapshot version 1.9 release 48Larry Knox2009-10-1114-29/+29
|
* [svn-r17627] Purpose:Mike McGreevy2009-10-094-21/+22
| | | | | | | | | | | | | | | | | | | Couple quick configure cleanups Description: - Made a few AM_LDFLAGS assignments a bit safer. - Regenerated a couple Makefile.in's via bin/reconfigure to address some typo-fixes that didn't propagate in my last check-in. Tested: - h5committest - Also, I suspect this fix will address a failure on Sandia's clogin2 machine, but Albert currently has no password to gain access, so I have only minimal logs of the failure and no way to test it there. I'll just let the automated tests there determine if indeed I'm right.
* [svn-r17626] Description:Quincey Koziol2009-10-091-2/+2
| | | | | | | | | | Correct error with initializing test file name in non-srcdir situation (like Windows) Tested on: Mac OS X/32 10.6.1 (amazon) FreeBSD/32 6.3 (duty) Windows
* [svn-r17625] Purpose:Mike McGreevy2009-10-091-12/+0
| | | | | | | | | | | | | MANIFEST Update Description: Updated MANIFEST to remove config/ files taken out of subversion in my last check-in. Tested: Ran bin/chkmanifest.
* [svn-r17624] Description:Quincey Koziol2009-10-097-67/+187
| | | | | | | | | | | | | | | | | | | | | | | Don't allow reads to change or add to the metadata accumulator, since they might be speculative and could bring raw data into the metadata accumulator. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17623] Description:Quincey Koziol2009-10-0932-1224/+2086
| | | | | | | | | | | | | | | | | | | | | | Bring "compress group's fractal heap" feature from branch back to trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17619] Add comments about h5diff change made for epsilon.Peter Cao2009-10-081-0/+3
|
* [svn-r17616] Purpose:Mike McGreevy2009-10-0899-2101/+991
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | CFLAGS overhaul Description: Modified the way configure handles CFLAGS. (note: all changes also apply to FCFLAGS, CXXFLAGS, CPPFLAGS, and LDFLAGS). 1. The configure process will now always preserve a user's CFLAGS environment variable setup. Any additional flags necessary for compilation added at configure time will be passed into the Makefiles as AM_CFLAGS, which is an automake construct to be used in addition to CFLAGS. This will allow a user to have the final say, as CFLAGS will always appear later in the compile line than AM_CFLAGS. Additionally, setting CFLAGS during make will no longer completely erase all flags set by configure, since they're maintained in AM_CFLAGS. 2. Additionally, where possible, flags previously being assigned directly into CFLAGS (and thus propagating into h5cc) have now been redirected into H5_CFLAGS, so they're used ONLY for compiling hdf5, and not embedded into the h5cc wrapper script as well. *Note that H5_CFLAGS ultimately is assigned into AM_CFLAGS for use in the Makefiles. Complete description of changes and build process will be included in a Configure Document that Elena and I are working on. 3. Removed unsupported config files. This includes: config/dec-osf* config/hpux11.00 config/irix5.x config/powerpc-ibm-aix4.x config/rs6000-ibm-aix5.x config/unicos* 4. Modified configure summary to display additional values. Specifically, appropriate AM_* variables are being shown, as well as H5_FCFLAGS and H5_CXXFLAGS, which were for some reason not already present. Tested: - H5committest - Tested on all THG / NCSA machines, using several combinations of the more prominent configure options (c++, fortran, szip, threadsafe, parallel, et cetera). (Thanks to Quincey for rysnc testing setup!) - With regards to new automated testing, anything *necessary* for compilation will be caught by the daily tests as it stands now. (i.e., if LDFLAGS is not properly set when szip is used, linking will fail). Additionally, with regards to which flags get into h5cc, if any *necessary* flags have been improperly removed, then daily tests should fail during make installcheck. Additional machine-specific desired behaviors and/or checks may have to be set up separately within the daily tests, so this is something to work on.
* [svn-r17615] Updated with H5Pget_preserve fix information.Albert Cheng2009-10-081-0/+1
|
* [svn-r17611] Bug fix (ID 1628):Albert Cheng2009-10-082-3/+15
| | | | | | | | | There was a typo in the H5Pget_preserve that it was returning the wrong value. Fixed. Also added a test in test/cmpd_dset.c to verify the correctness of H5Pset_preserve and H5Pget_preserve. Tested: h5committest plus jam serial.
* [svn-r17606] Code Cleanup:Albert Cheng2009-10-0710-276/+25
| | | | | | | | TFLOPS machine has retired long ago. Removed all code specific for its support. Test: h5committested.
* [svn-r17604] Description:Quincey Koziol2009-10-073-40/+180
| | | | | | | | | | | | | | | | | | | | | | Correctly invoke generic property list class callbacks all the way to the root of the class hierarchy. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17603] Bug fix:Albert Cheng2009-10-061-2/+3
| | | | | | | | | | | The ph5diff tests printout incorrectly reporting they are running h5diff when it actually is running ph5diff. Fixed. Tested: Jam (parallel), linew (serial) No H5committest since it is a shell script and Jam tests both serial and parallel h5diff for Linux while Linew tests Big endian platform.
* [svn-r17599] Description:Quincey Koziol2009-10-065-9/+7
| | | | | | | | | | | | | | | | | | | | | | Minor code cleanups, based on cleanups in the compress_group_fheap branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17596] Description:Quincey Koziol2009-10-061-1/+1
| | | | | | | Clean up minor compiler warning. Tested on: Mac OS X/32 10.6.1 (amazon)
* [svn-r17595] Added new file H5Fdeprec.c to projects.Allen Byrne2009-10-062-0/+8
| | | | Tested: windows
* [svn-r17592] Bug fix:Albert Cheng2009-10-061-2/+4
| | | | | | | | Release would leave behind an Makefile even if it did not exist before. Fixed by restoring only the pre-existed Makefile. Tested: Jam.
* [svn-r17591] Added new file to projects.Allen Byrne2009-10-052-0/+8
| | | | Tested: windows
* [svn-r17589] Snapshot version 1.9 release 47Larry Knox2009-10-0414-29/+29
|
* [svn-r17587] Purpose:Binh-Minh Ribler2009-10-042-3/+3
| | | | | | | | | | | Fixed bugzilla #1061 Description: Added a check for NULL before accessing a pointer Also, removed a few warnings about returning values Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r17585] Purpose: Fix bug 1597Neil Fortner2009-10-026-53/+571
| | | | | | | | | | | Description: When copying a dataset using a vlen inside a compound, the various dataset copying callbacks would allocate a background buffer but would not use it when converting from disk to memory, only memory to disk. This caused an assertion failure as compounds always need a background buffer. These callbacks have been modified to use the background buffer for both conversions. Tested: jam, linew, smirom (h5committest)
* [svn-r17583] Description:Quincey Koziol2009-10-021-2/+2
| | | | | | | Correct last minute typo. *sigh* Tested on: FreeBSD/32 6.3 (duty)
* [svn-r17582] Description:Quincey Koziol2009-10-0270-475/+4794
| | | | | | | | | | | | | | | | | | | | | Bring changes from file free space branch back to the trunk. *yay!* Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17580] Added testlibinfo.sh testcheck_version.sh to be distcleaned.Albert Cheng2009-10-012-23/+23
| | | | Tested: Jam.
* [svn-r17578] Simple improvement to clean up go during "make check-clean"Albert Cheng2009-10-012-4/+6
| | | | | | and removed the redundant cleaning of Makefile. Tested: jam parallel.
* [svn-r17573] Description:Quincey Koziol2009-10-011-10/+20
| | | | | | | | | | Fix several errors in code, which was not compiling... :-( Tested on: FreeBSD/32 6.3 (duty) in debug mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17571] Purpose:Mike McGreevy2009-10-013-2/+6
| | | | | | | | | | | | | | Makefile Bug Fix Description: Added $(EXEEXT) extension to H5detect when it's executed to generate H5Tinit.c so it works correctly on platforms that require the full extension when running executables. Tested: h5committest, mingw, and user-verified (via submitted patch).
* [svn-r17570] Bug fixes and improvement done in v1.8 and forgot to port here.Albert Cheng2009-10-011-12/+23
| | | | Tested: jam only as it is simple shell script changes.
* [svn-r17567] Purpose:Mike McGreevy2009-10-014-48/+57
| | | | | | | | | | | | | | | | | | | | | Configure Fix Description: Modified configure to set FC and CXX to "no" when fortran and c++ are not being compiled, respectively. This will prevent configure from running some checks on these compilers when they are not being used. This fixes a problem that was occuring when FC and/or CXX are set to a nonexistant or invalid compiler. Even if the languages were disabled, a libtool test would fail, thus preventing libtool from properly linking any libraries, yet configure would not flag an error message due to this because the languages were disabled. Tested: - h5committest (jam, smirom, linew) - manually eyeballed configure output and logfile.
* [svn-r17566] Fix for Bug 1562. H5DSis_attached needed to account for ↵Allen Byrne2009-10-0111-271/+2883
| | | | | | | | | platform dependent types. Added test and test files for LE and BE dimension scales. Reworked part of test_ds file as part of debug. Added missing H5Tclose in region reference routines. H5DS.c checked for other locations which need to account for platform dependent types in dealing with ds_list_t. Added generator program for test files of LE and BE dimension scales. Tested: local linux, h5committest
* [svn-r17562] Fixed a syntax error that generates a file named 0.Albert Cheng2009-10-011-2/+2
| | | | | Tested: Jam as it is simple shell script change.
* [svn-r17553] Description:Quincey Koziol2009-09-2921-202/+329
| | | | | | | | | | | | | | | | | | | | | | Bring general fixes/improvements from file_free_space branch back to trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17550] Updated with H5check_version tests.Albert Cheng2009-09-291-4/+2
|
* [svn-r17544] Albert Cheng2009-09-291-1/+1
|
* [svn-r17543] Bug fix (ID 1656):Albert Cheng2009-09-293-31/+100
| | | | | | | | | Changed H5check_version() to suppress the warning message totally if $HDF5_DISABLE_VERSION_CHECK is 2 or higher. (Old behavior treated 3 or higher the same as 1, that is to print a warning and allows the program to continue. Tested: h5committested, extra jam serial, --disable-embedded-libinfo.
* [svn-r17542] New test:Albert Cheng2009-09-287-12/+316
| | | | | | | | Add new tests (tcheck_version, testcheck_version.sh) to verify H5check_version() does issue warnings and abort accordingly. Tests: H5committed tested plus jam serial tested.
* [svn-r17541] Added missing farray(dll) project dependicies on hdf5 and ↵Allen Byrne2009-09-282-718/+734
| | | | libtest to the solution file.
* [svn-r17538] Snapshot version 1.9 release 46Larry Knox2009-09-2714-28/+28
|
* [svn-r17535] Purpose: Fix bug 1620Neil Fortner2009-09-252-2/+4
| | | | | | | | | Description: H5Ppublic.h listed H5Pget_filter_by_id1 and H5Pget_filter_by_id2 as returning H5Z_filter_t, when in fact they return herr_t. The header file has been corrected to indicate that they return herr_t. Tested: jam
* [svn-r17534] Add note to RELEASE.txt for changes in r17530Neil Fortner2009-09-251-0/+2
|
* [svn-r17530] Purpose: Fix bug 1555Neil Fortner2009-09-252-9/+52
| | | | | | | | | | | | | Description: At several places in H5Pint.c properties were being compared using memcmp, not using the registered "cmp" callback. This could cause memory checkers to report uninitialized memory errors, and could conceivably cause runtime errors if memcmp reported false equality (for example if a value pointed to by the property changed). The code has been changed to always use the cmp callback. Tests have been added that check this in all the places that previously used memcmp. Tested: jam, linew, smirom (h5committest)
generated by cgit v0.12 at 2024-11-17 11:05:37 (GMT)