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* [svn-r7501] Purpose:Pedro Vicente Nunes2003-09-191-0/+1
| | | | | | | | | added the Dependencies file of h5repack Makefile to the list Misc. update:
* [svn-r7500] Pedro Vicente Nunes2003-09-191-0/+0
| | | | | | | | | | | | | | | | Purpose: added the Dependencies file to the folder tested on IRIX b Description: Solution: platforms tested: Misc. update:
* [svn-r7499] Purpose:Pedro Vicente Nunes2003-09-191-1/+1
| | | | | | | | | | | | added h5repack to the list of tools to make check Platforms tested: linux (small change) Misc. update:
* [svn-r7498] Purpose:Quincey Koziol2003-09-1910-72/+50
| | | | | | | | | | | Code cleanup Description: Clean up various warnings and parameter mis-matches, etc. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to need h5committest
* [svn-r7497] Purpose:Pedro Vicente Nunes2003-09-194-0/+227
| | | | | | | | | | | added the new tool h5repack right now it just contains source files with an empty main Platforms tested: linux (small change) Misc. update:
* [svn-r7496] Purpose:Pedro Vicente Nunes2003-09-193-4144/+5276
| | | | | | | | | | | | included the new tool h5repack in the configure files Platforms tested: linux (small change) Misc. update:
* [svn-r7495] Purpose:Bill Wendling2003-09-194-59/+2
| | | | | | | | | | | | | | | | Removed Dead Code Description: Some of the FPHDF5 code was dead (I thought it'd be useful at one point, but was wrong). Solution: Removed Platforms tested: Linux (FPHDF5 specific. No need for h5committest) Misc. update:
* [svn-r7494] Purpose:Quincey Koziol2003-09-197-703/+792
| | | | | | | | | | | | | | | | | | Bug fix Description: Buffer for decoding superblock's driver information was too small when using some VFDs (like the multi-file VFD). Also made FPH5 code more portable and obvious when it's broadcasting the superblock from the captain process to the other clients. Solution: Allocate the buffer for the driver information dynamicly Platforms tested: Copper No h5committest because it's already working on other platforms.
* [svn-r7492] Description:Quincey Koziol2003-09-181-0/+4
| | | | | | | | | Disable "big" parallel tests until I get a chance to look into the problems (probably during/after the workshop). Platforms tested: Eyeballed Too minor to require h5committest
* [svn-r7491] Purpose:Bill Wendling2003-09-182-115/+182
| | | | | | | | | | | | | FPHDF5 Update Description: Added locking/unlocking to the AC_protect/AC_unprotect calls. The SAP does all of the caching so nothing should be saved on the client side. So, when the client unlocks the metadata, it can destroy it. The metadata is always read from the SAP during a lock. Platforms tested: Linux (FPHDF5 specific change. No need for h5committest)
* [svn-r7490] Purpose:Bill Wendling2003-09-181-1/+17
| | | | | | | | | | | | | | | Update Description: Removed the call to H5HL_peek Platforms tested: Modi4 (paralle, Fortran) Sol (Fortran) Linux (C++, Fortran) Copper (Parallel, Fortran) Misc. update:
* [svn-r7489] Purpose:Bill Wendling2003-09-1823-1417/+1654
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Update Description: A lot of modifications for the FPHDF5 stuff: H5AC.c H5ACprivate.h - Removed AC_find (it's replaced with AC_protect and AC_unprotect). Added flushing if it's an FPHDF5 driver and we're doing an AC_set or AC_unprotect with the dirty flag set. H5B.c - Split up the B_flush function into different functions since the one function was doing serialization which is better left as a separate entity. H5D.c - Removed some FPHDF5 code that was incorrect H5F.c - Split up the F_flush function so that it no longer allocates file space. Created new functions (F_init_superblock, F_read_superblock, and F_write_superblock) for greater modularity and so that the FPHDF5 non-captain processes can read the superblock after the captain process writes it. H5FD.c - Error message correction. H5FDfphdf5.c - Removed MPI barrier call that wasn't needed. H5FPclient.c H5FPserver.c - Modified so that if a process requests data that isn't exactly aligned, we can return it if we have the block that contains the requested address. H5G.c H5Gent.c H5Gnode.c H5HL.c H5HLpkg.h H5HLprivate.h H5Oefl.c - Removed the H5HL_peek function since it was doing a (now unsafe) holding of the information in the cache. Replaced with protect and unprotect calls. H5TB.c - Error fix. The TB_dless function wasn't working properly. H5Gstab.c - Format change. H5err.txt H5Edefin.h H5Einit.h H5Epubgen.h H5Eterm.h - Added new error code. Platforms tested: Modi4 (paralle, Fortran) Sol (Fortran) Linux (C++, Fortran) Copper (Parallel, Fortran) Misc. update:
* [svn-r7488] Purpose:Albert Cheng2003-09-181-3/+7
| | | | | | | | | | | | | Improvement Description: The -w timeout option is not supported by all hosts. Added the "ping -c 3" possible PING command. Platforms tested: Tested in eirene by hand only. Misc. update:
* [svn-r7482] Purpose:Quincey Koziol2003-09-161-1/+2
| | | | | | | | | | | | | | | | | Bug fix Description: The MPI_File_set_size() routine on ASCI Red is not able to extend files so that they are larger than 2GB. Solution: Add an extra macro which controls whether MPI_File_set_size() can handle >2GB offsets or if our "older" way of reading a byte, then writing a byte at the appropriate offset should be used. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7480] Purpose:Quincey Koziol2003-09-169-19/+223
| | | | | | | | | | | | | | | | | Bug fix Description: The MPI_File_set_size() routine on ASCI Red is not able to extend files so that they are larger than 2GB. Solution: Add an extra macro which controls whether MPI_File_set_size() can handle >2GB offsets or if our "older" way of reading a byte, then writing a byte at the appropriate offset should be used. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7478] Purpose:Quincey Koziol2003-09-161-1/+4
| | | | | | | | | | | | | | | Bug fix Description: H5Dwrite was only checking the "top level" of the datatype to stop parallel I/O on variable-length datatypes. Solution: Make checks "deeper". Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7476] Purpose:Quincey Koziol2003-09-161-1/+3
| | | | Clarify documentation about H5Tset_size for string datatypes.
* [svn-r7474] Purpose: Add more testRaymond Lu2003-09-151-1/+180
| | | | | | | | Description: test fixed-length strings in two ways: array of strings and array of character. Platforms tested: h5committest
* [svn-r7473] Purpose:Quincey Koziol2003-09-151-60/+129
| | | | | | | | | | | | | | Code cleanup & optimization Description: Split superblock initialization and space allocation out from writing the superblock information to disk, which makes the code much cleaner and easier to understand and also allows FPHDF5 to have a fully completed superblock to Bcast to other (non-caption) processes. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r7472] Snapshot version 1.7 release 3HDF Admin2003-09-146-15/+24
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* [svn-r7471] Purpose:Bill Wendling2003-09-122-539/+629
| | | | | | | | | | | | | | | | | | | | | Update Description: The F_open and F_flush functions had a lot of cruft in them. The F_flush was being used as a way to allocate the superblock. The F_open had a bunch of code in there to read and serialize the superblock. Solution: Moved these out into their own functions. Platforms tested: Modi4 (parallel, Fortran) Copper (parallel, Fortran) Verbena (Fortran, C++) Sol (Fortran) Misc. update:
* [svn-r7468] Purpose:Quincey Koziol2003-09-127-78/+240
| | | | | | | | | | | | | | | | | | Code cleanup, etc. Description: Generalize Ray's datatype fixes to handle packing compound datatypes which are the base type of an array or variable-length type, etc. Also track "packedness" of a compound datatype from it's creation, instead of only setting the 'packed' flag after the datatype was explicitly packed. Updated docs to reflect that a compound datatype is allowed to grow (but not shrink). Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7467] Purpose:Quincey Koziol2003-09-117-121/+96
| | | | | | | | | | | | | | Code cleanup Description: Patch up a few places where the metadata cache could ask for a read lock instead of a write lock and other minor code cleanups. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to need h5committest Misc. update:
* [svn-r7465] Purpose:Quincey Koziol2003-09-111-2/+3
| | | | | Fix incorrect # of 16-byte objects which fit into a 4096 byte global heap collection (170 -> 127)
* [svn-r7463] Purpose:Quincey Koziol2003-09-111-2/+11
| | | | Tweak some wording for global heap description.
* [svn-r7462] *** empty log message ***Raymond Lu2003-09-101-10/+136
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* [svn-r7461] Purpose: bug #1017Raymond Lu2003-09-103-7/+16
| | | | | | | | Description: H5Tpack fails if called twice or datatype is locked. Compound datatype wasn't expandable. Platforms tested: h5committest
* [svn-r7460] Purpose:Bill Wendling2003-09-1011-61/+87
| | | | | | | | | | | | | | | Update Description: Added extra parameter to the H5AC_protect() function that indicates if the cache being asked for is going to be written to or just read from. Those AC_protect calls that were H5AC_find calls are now read-only. The rest are writes. Platforms tested: Linux (h5committest not needed due to size and small impact) Misc. update:
* [svn-r7457] Purpose:Quincey Koziol2003-09-103-25/+91
| | | | | | | | | | | | | | | | | | | | Bug fix. Description: Correct bug where a file opened twice, once with read-write permission and once with read-only permission would cause closing the file with the read-only file ID to fail because it was trying to flush information out of the file. Solution: Check the permissions on file IDs that are being closed and only flush when the particular file ID was opened with write permission. Platforms tested: FreeBSD 4.9 (sleipnir) too small to need h5committest Misc. update:
* [svn-r7456] Purpose:Bill Wendling2003-09-109-59/+201
| | | | | | | | | | | | | | | | | | | | | Removal of H5AC_find() Description: The H5AC_find() function is mostly redundant and with the new Flexible Parallel HDF5 stuff, we need to do locking on metadata returned from the H5AC_find() anyway. So, all of the locking stuff will be placed in the H5AC_{un}protect() functions. The H5AC_find() is no longer needed. Solution: Replaced all H5AC_finds with H5AC_protects and H5AC_unprotects. Platforms tested: Linux (Fortran & C++) Solaris (Fortran) Irix (Parallel & Fortran) Misc. update:
* [svn-r7453] Purpose:Quincey Koziol2003-09-104-41/+60
| | | | | | | Checkpoint file format spec. Description: Clarifications and cleanups related to file format review.
* [svn-r7452] Purpose:Quincey Koziol2003-09-101-45/+273
| | | | Checkpoint file format spec.
* [svn-r7451] Purpose:Quincey Koziol2003-09-101-0/+1
| | | | Add new VLTypes.html Tech Note
* [svn-r7450] Purpose:Quincey Koziol2003-09-102-0/+156
| | | | Add document describing issues relating to variable-length datatypes.
* [svn-r7449] Purpose:MuQun Yang2003-09-091-0/+0
| | | | | | | | | | | | | | | bug fix Description: The same h5detect bug also happens in this branch. Solution: remove h5detect.c from the windows source directory. Platforms tested: windows 2000 Misc. update:
* [svn-r7446] Purpose:Quincey Koziol2003-09-066-34/+58
| | | | | | | | | | | | Code cleanup/bug fix Description: Move metadata cache calls around a bit so they protect the usage of the metadata better. Platforms tested: FreeBSD 4.9 (sleipnir) too small to need h5committest
* [svn-r7445] Purpose:Bill Wendling2003-09-045-26/+78
| | | | | | | | | | | | | | | | | | | | | Fix, of a sort Description: Some of the code would get an object from the cache via the H5AC_find() function and then modify the returned object. This behavior is incorrect as the pointer returned via the H5AC_find() function is supposed to be read only. Solution: Changed the H5AC_finds to H5AC_protect() instead and added the appropriate H5AC_unprotect() function. Platforms tested: (simulated h5committest by hand since it doesn't work for me) Linux (Fortran, C++) Solaris (Fortran) AIX (Fortran, C++) SGI (Parallel, Fortran)
* [svn-r7444] Purpose:Quincey Koziol2003-09-043-109/+117
| | | | | | | | | | | Code cleanup Description: More de-linting Platforms tested: FreeBSD 4.9 (sleipnir) Too small to need h5committest
* [svn-r7441] Purpose:Quincey Koziol2003-09-044-4/+67
| | | | | | | | | | | | | | | | | Bug fix Description: The VFL driver ID in a file's access proprty list wasn't being reference counted correctly, causing the VFL driver to get prematurely closed after several calls to "H5Pget_access_plist->H5Pclose". Solution: Increment VFL driver ID reference count when copy of file's access property list is made in H5Pget_access_plist() Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7440] Purpose:Quincey Koziol2003-09-034-55/+64
| | | | | | | | | | | Code cleanup Description: More de-linting... Platforms tested: FreeBSD 4.9 (sleipnir) too small to need h5committest
* [svn-r7439] Purpose:Quincey Koziol2003-09-032-4/+4
| | | | | | | | | | | | Code cleanup Description: Clear up a couple of minor issues with compiling the library with a C++ compiler. Platforms tested: FreeBSD 4.9 (sleipnir) Too minor to require h5committest
* [svn-r7438] Purpose:Quincey Koziol2003-09-0213-219/+149
| | | | | | | | | | | Code cleanup Description: More de-linting... Platforms tested: FreeBSD 4.9 (sleipnir) too small to need h5committest
* [svn-r7436] Snapshot version 1.7 release 2HDF Admin2003-08-317-54/+80
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* [svn-r7434] Purpose:Quincey Koziol2003-08-3120-151/+307
| | | | | | | | | | | | | | | | | | | | Bug Fix and code cleanup Description: Correct error in H5T_detect_class that was causing nested compound datatypes with to not detect the datatype class of fields correctly, which caused errors with fill-values, variable-length datatypes and chunks later on. Return the rank of the array datatype from H5Tget_array_dims(), like H5Sget_dims(). Lots of cleanups to datatype code, to make the handling of arrays, compound types, variable-length strings and sequences and enumerated types more consistent and robust. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7433] Purpose:Quincey Koziol2003-08-311-1/+1
| | | | Corrected typo in help string
* [svn-r7431] Purpose:Quincey Koziol2003-08-295-88/+98
| | | | | | | | | | | Code cleanup Description: De-linted more code. Platforms tested: FreeBSD 4.9 (sleipnir) too small to need h5committest
* [svn-r7430] Frank Baker2003-08-282-6/+6
| | | | | | | | | Purpose: RM_H5G.html -- Minor copy edits H5.intro.html -- Removed Library version # from doc title Platforms tested: IE 5, Safari
* [svn-r7429] Frank Baker2003-08-281-53/+94
| | | | | | | | | | | | | | | Purpose: Enhanced indexing; copy edits. Description: Restructured index and clarify descriptions and/or make them more parallel; added link to "Other tools" Added note that h4toh5 and h5toh4 are no longer part of the HDF5 library distribution Lots of copy edits Platforms tested: IE 5, Safari
* [svn-r7428] Purpose:Quincey Koziol2003-08-283-27/+30
| | | | | | | | | | | Code cleanup Description: De-linted more code Platforms tested: FreeBSD 4.8 (sleipnir) too minor to need h5committest
* [svn-r7426] Purpose:Quincey Koziol2003-08-289-27/+303
| | | | | | | | | | | | | | | | | Bug fix Description: When datasets are deleted from a file, they are removed from the sieve buffer, but instead of invalidating only the part of the sieve buffer affected, the sieve buffer code would throw away the entire sieve buffer, potentially including other raw data in the buffer that hadn't been written to disk yet. Solution: Improve the sieve buffer clearing code to handle partial invalidations. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
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