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* HDFFV-10664 add missing function and check for restrictionAllen Byrne2019-01-044-4/+85
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* Merge pull request #1430 in HDFFV/hdf5 from ↵jake.smith2019-01-041-24/+17
|\ | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop * commit 'f7115c31363e80e850c0a228e63a5a035c48b74a': Remove "bad" statements at end of TEST_ERROR. Formerly arguments to FAIL_PUTS_ERROR Add semicolon at end of TEST_ERROR() invocation for consistency.
| * Remove "bad" statements at end of TEST_ERROR.Jacob Smith2019-01-041-24/+17
| | | | | | | | Formerly arguments to FAIL_PUTS_ERROR
| * Add semicolon at end of TEST_ERROR() invocation for consistency.Jacob Smith2019-01-041-1/+1
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* | Merge pull request #1428 in HDFFV/hdf5 from ↵Dana Robinson2019-01-043-245/+273
|\ \ | |/ |/| | | | | | | | | ~DEROBINS/hdf5_der:openmpi_tweaks to develop * commit 'd59aa1d75cb6d0ae4f5964d017e275aa53394eb6': Cleaned up the parallel flush test and set t_pflush1 to always fail. Also set CMake to handle this.
| * Cleaned up the parallel flush test and set t_pflush1 to always fail.Dana Robinson2019-01-043-245/+273
| | | | | | | | Also set CMake to handle this.
* | Merge pull request #1427 in HDFFV/hdf5 from ↵jake.smith2019-01-042-37/+37
|\ \ | |/ |/| | | | | | | | | | | ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop * commit '763db8178e673fdcae4a370fe2e6d345f905d5f1': Change FAIL_PUTS_ERROR to TEST_ERROR. Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2.
| * Change FAIL_PUTS_ERROR to TEST_ERROR.Jacob Smith2019-01-041-17/+17
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| * Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2.Jacob Smith2019-01-031-20/+20
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* | Merge pull request #1426 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-036-5/+20
|\ \ | |/ |/| | | | | | | | | | | * commit 'f4516d40feb7ea696e228253bc64a94f55296cbb': Fix comment Update toolchain comment Use c99 standard cmake variable Add PGI toolchain
| * Fix commentAllen Byrne2019-01-031-1/+2
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| * Update toolchain commentAllen Byrne2019-01-033-1/+4
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| * Use c99 standard cmake variableAllen Byrne2019-01-021-3/+3
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| * Add PGI toolchainAllen Byrne2019-01-022-0/+11
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* | Merge pull request #1408 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-032-5/+26
|\ \ | |/ |/| | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop Merged to catch daily test. * commit '40c55f24ecbdd322fba527d768689fbdbd268374': Removed a comment. Fixed documentation - typo only Fixed CVE division-by-zero issues Description: Fixed HDFFV-10577 and similar issues found in H5Dchunk.c. All the occurrences are in: H5D__create_chunk_map_single H5D__create_chunk_file_map_hyper H5D__chunk_allocate H5D__chunk_update_old_edge_chunks H5D__chunk_prune_by_extent H5D__chunk_copy_cb H5D__chunk_collective_fill Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * Removed a comment.Binh-Minh Ribler2019-01-031-1/+0
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| * Fixed documentation - typo onlyBinh-Minh Ribler2018-12-231-2/+1
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| * Merge branch 'develop' of ↵Binh-Minh Ribler2018-12-23319-12035/+21245
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| * | Fixed CVE division-by-zero issuesBinh-Minh Ribler2018-12-231-3/+26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Fixed HDFFV-10577 and similar issues found in H5Dchunk.c. All the occurrences are in: H5D__create_chunk_map_single H5D__create_chunk_file_map_hyper H5D__chunk_allocate H5D__chunk_update_old_edge_chunks H5D__chunk_prune_by_extent H5D__chunk_copy_cb H5D__chunk_collective_fill Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
* | | Merge pull request #1421 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-0213-87/+307
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'ed0c468902409ae7fa8fb91c5f5a3a3093846736': HDFFV-10664 add check for state before set call HDFFV-10546 refactor variable name HDFFV-10664 minimized dataset headers for java interface
| * | | HDFFV-10664 add check for state before set callAllen Byrne2019-01-022-2/+8
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| * | | HDFFV-10546 refactor variable nameAllen Byrne2019-01-024-83/+83
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-01-0214-307/+297
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'af21ce90d9465e805807f17da21f93e64e03492a': Changed to Unix line endings and chmod -x. Cleaned up and normalized VFD init calls.
| * | | | HDFFV-10664 minimized dataset headers for java interfaceAllen Byrne2018-12-319-4/+218
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* | | | | Merge pull request #1414 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2019-01-0210-21/+317
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'd3dff6efe6f769b219f9dcccebd057afe75ed3c7': Correction based on code review. Changes based on feedback from pull request. Fix for HDFFV-10659: The library abort with "infinite loop closing library" after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
| * \ \ \ \ Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Vailin Choi2019-01-0255-2079/+4331
| |\ \ \ \ \ | |/ / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop Resolve conflicts: Conflicts: test/Makefile.am
* | | | | | Merge pull request #1420 in HDFFV/hdf5 from ↵jake.smith2019-01-021-1/+1
|\ \ \ \ \ \ | |_|_|/ / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop * commit '8324be7fad5f1417aca3d283a8f8caf6b75c4af7': fix wrong function name that is missed by correctional macro
| * | | | | fix wrong function name that is missed by correctional macroJacob Smith2018-12-311-1/+1
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* | | | | Merge pull request #1423 in HDFFV/hdf5 from ↵Dana Robinson2019-01-027-245/+245
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '1f644fe7cd0188628571c5527f51fce4ddeeebf4': Changed to Unix line endings and chmod -x.
| * | | | | Changed to Unix line endings and chmod -x.Dana Robinson2019-01-017-245/+245
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* | | | | Merge pull request #1422 in HDFFV/hdf5 from ↵Dana Robinson2019-01-017-62/+52
|\ \ \ \ \ | |/ / / / |/| | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:vfd_init_cleanup to develop * commit '07b76068a4517f874fc5584049178ed5f61e3cea': Cleaned up and normalized VFD init calls.
| * | | | Merge branch 'develop' into vfd_init_cleanupDana Robinson2019-01-01131-8266/+13055
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* | | | | Merge pull request #1416 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-12-312-6/+9
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit '0e6cf18b06d71dc8da9307dddce5e1833f197e19': Fix runtest case for data to stdout in tool
| * \ \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-12-317-7/+85
| |\ \ \ \ \ | |/ / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b30a1fe44aa804a67f2291005bf8135ac5c2dc99': Updated the parallel install docs. Eliminated the need for a separate script variable. Added a helpful message to the flush script. Added a shell script so we can run the parallel flush test on OpenMPI.
* | | | | | Merge pull request #1400 in HDFFV/hdf5 from ↵Dana Robinson2018-12-317-7/+85
|\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:openmpi_tweaks to develop * commit 'd6c2a96ac2f103d90b96d5b39814810e6a31ef99': Updated the parallel install docs. Eliminated the need for a separate script variable. Added a helpful message to the flush script. Added a shell script so we can run the parallel flush test on OpenMPI.
| * | | | | | Updated the parallel install docs.Dana Robinson2018-12-311-8/+3
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| * | | | | | Eliminated the need for a separate script variable.Dana Robinson2018-12-312-8/+14
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| * | | | | | Merge branch 'develop' into openmpi_tweaksDana Robinson2018-12-31106-7911/+12221
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| * | | | | | | Added a helpful message to the flush script.Dana Robinson2018-12-201-0/+6
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| * | | | | | | Added a shell script so we can run the parallel flush testDana Robinson2018-12-207-9/+80
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | on OpenMPI.
| | | * | | | | Fix runtest case for data to stdout in toolAllen Byrne2018-12-312-6/+9
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* | | | | | | Merge pull request #1413 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:yay_plugins ↵Dana Robinson2018-12-3110-46/+437
|\ \ \ \ \ \ \ | |_|/ / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '3ca19cca5395d79be69209f8d7d0a2b06834a648': Flipped swapped testing strings. Added test_vol_plugin.sh to the list of scripts to clean Fixed a CMake build issue (CMake still doesn't run the VOL plugin tests) Added more sub-tests to the VOL plugin test. Added a simple test for registration of VOL connector plugins. Autotools only for right now, but this will be fleshed out in future work.
| * | | | | | Flipped swapped testing strings.Dana Robinson2018-12-281-2/+2
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| * | | | | | Merge branch 'develop' into yay_pluginsDana Robinson2018-12-2827-2511/+3642
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| * \ \ \ \ \ \ Merge branch 'develop' into yay_pluginsDana Robinson2018-12-282-3/+104
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| * | | | | | | | Added test_vol_plugin.sh to the list of scripts to cleanDana Robinson2018-12-281-1/+2
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| * | | | | | | | Fixed a CMake build issue (CMake still doesn't run the VOL pluginDana Robinson2018-12-281-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | tests)
| * | | | | | | | Added more sub-tests to the VOL plugin test.Dana Robinson2018-12-283-21/+177
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| * | | | | | | | Added a simple test for registration of VOL connector plugins.Dana Robinson2018-12-277-36/+270
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Autotools only for right now, but this will be fleshed out in future work.
* | | | | | | | | Merge pull request #1372 in HDFFV/hdf5 from ↵jake.smith2018-12-2926-1713/+3503
|\ \ \ \ \ \ \ \ \ | |_|_|/ / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop Dataset object header minimization Jira TRILAB-45 * commit 'f54fb420d08ea0a7e7b026150c0ab559803e0acd': (34 commits) Specify variable type. Remove unnecessary whitespace. OHDR tests now accept h5_fileaccess() fapls. Formatting, informative comments, and minor renaming. Fix some CMake listings Add error checking to the minimized dset header size calculation. Update printf->HDprintf statements. Remove `#if 0` block of deprecated code. Fix mistake with H5E_BEGIN_TRY {...} H5E_END_TRY block containing ERROR-raising macros. Formatting tweaks. Add "compact" storage test to relative header size comparisons. Formatting adjustments. Formatting adjustments Move H5Fset_dset_no_attrs_hint VOL operations to native. Move minimzied object header tests from separate file to test/ohdr.c Some formatting changes. Re-format test/ohdr_mindset.c Fix a few transcription errors in other test files. formatting adjustments Reformat to be more consistent with existing code. Fix a few typos. add missing paramter - macro seemingly unused, but absence results in compiler complaint fix reference; move declaration in file Remove unused debugging print in '#if 0' block Fix typo. Fix CHECK of wrong ID (dset[2|3]_id). change test file name and apply 'h5_fixname' to it Sidestep and hide&flag minor issues causing test failures. Incorporate minimized dset ohdr tests into extant suite. ...
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