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* [svn-r12590] Description:Quincey Koziol2006-08-171-1/+1
| | | | | | | | | | Set the parent indirect block information correctly when creating new row sections. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12589] Description:Quincey Koziol2006-08-175-35/+48
| | | | | | | | | | | | | | Revert passing the v2 B-tree class to callbacks, it turns out to be unnecessary. Also revert have a "class private" pointer for each v2 B-tree class. Add in support for the different flavors of fractal heap 'huge' objects also. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12588] Description:Quincey Koziol2006-08-171-0/+9
| | | | | | | | | | Set the address of the free space section info's parent header correctly when bringing the section info into the metadata cache. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12587] Description:Quincey Koziol2006-08-171-0/+1
| | | | | | | | | Call the H5L API's termination routine when the library is terminating. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12585] Description:Quincey Koziol2006-08-171-1/+1
| | | | | | | Correct parameter flipped in memset call (Thanks Peter!) Tested on: Very minor, just eyeballed.
* [svn-r12584] Mentioned VFD in test output to make it easier to tell which ↵James Laird2006-08-1745-1156/+1118
| | | | | | | | | VFD is being used when a test is run. Running reconfigure also regenerated error header files (because someone edited them manually?).
* [svn-r12582] Purpose:Albert Cheng2006-08-171-2/+2
| | | | | | | | | | | upgrade. Description: Changed the error report of read and write to HSYS_GOTO_ERROR to report system error messages. Platforms tested: heping, osage, copper.
* [svn-r12581] Description:Elena Pourmal2006-08-161-212/+274
| | | | | | | Bug fix and maintenance Checked in James fix and did more code refactoring. Platforms tested: heping, copper and shanti (and X1 for the bug fix)
* [svn-r12579] Description:Elena Pourmal2006-08-151-1/+5
| | | | | | | | | | | -O3 flag causes compilation problems on most of the platforms with Intel compiler. The problem exists in all vesrions of icc compiler up to the newest 9.1 Solution: Use less agressive default setting O2 to avoid headache Platforms tested: Linux 2.6 ia64 at UCAR (hal), cobalt (NCSA)
* [svn-r12578] Description:Elena Pourmal2006-08-142-5/+5
| | | | | | | | Maintenance for alpha5 release; brought command files up-to-date. Platforms tested: VMS server. Compilation, C++, F90 and tools tests passed; C tests are still running.
* [svn-r12577] Update windows project files to reflect the HDF5 library source ↵MuQun Yang2006-08-142-4/+64
| | | | | | | | code recently committed. Test C,C++, fortran, debug,debug dll, release and release dll. MSVS 6.0 + Compaq Visual fortran 6.6c
* [svn-r12576] Added funtions to query the "current position" for Packet ↵James Laird2006-08-146-5/+83
| | | | Tables in C and C++.
* [svn-r12575] Description:Quincey Koziol2006-08-147-55/+277
| | | | | | | | | | | | | Allow the heap ID length to be chosen at heap creation time, to allow for making heap IDs long enough to directly embed the file offset & length of 'huge' objects in the heap ID (which allows them to be retrieved directly from disk, instead of requiring them to be looked up in the B-tree that tracks 'huge' objects) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 9 (shanti)
* [svn-r12573] Description:Quincey Koziol2006-08-132-156/+1009
| | | | | | | | | | | | Clean up a couple of compiler warnings in the 'huge' object code in the library. Add a bunch of 'huge' object regression tests Tested on: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12572] Description:Quincey Koziol2006-08-133-47/+54
| | | | | | | | | | Refactor new heap's header creation code to be all in the H5HFhdr.c module. Tested on: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12571] Description:Quincey Koziol2006-08-132-3/+32
| | | | | | | | | | | Fix failure in "remove bogus ID" test which turned up randomly (due to random "bogus" IDs being used in test :-) by adding some more defensive checks on object IDs to the object removal code. Tested on: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 (shanti)
* [svn-r12570] Description:Quincey Koziol2006-08-131-17/+15
| | | | | | | | | | Refactor file memory allocation code slightly, to make it clearer, along with adding/correcting some comments. Tested on: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12569] Description: MaintenanceElena Pourmal2006-08-121-183/+372
| | | | | | | | Refactored code in the main function to improve future maintenance and code readability. Platforms tested: heping, shanti (64-bit)
* [svn-r12568] Description:Quincey Koziol2006-08-124-5/+5
| | | | | | | | | Rename some files, to better align with the names of the functions within them. Tested on: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12567] Description:Quincey Koziol2006-08-123-25/+25
| | | | | | | | | Correct remaining compilation errors when debugging asserts are turned on in free space manager. Tested in: FreeBSD 4.11 (sleipnir) Too minor for h5committest
* [svn-r12566] Description:Quincey Koziol2006-08-122-2/+2
| | | | | | | | Removed free space manager from "enable-debug=all" list of flags, it's not really designed for "user level" debugging. Tested on: FreeBSD 4.11 (sleipnir)
* [svn-r12565] Description:Quincey Koziol2006-08-112-13/+13
| | | | | | | | | | | | | | Move metadata cache address rename for fractal heap indirect block immediately after reallocing the storage on disk - to prevent another routine in the library from confusing the cache by allocating more storage and attempting to insert it in metadata cache at the old block's location. Gotta like those monte carlo/random insert & delete tests, which exposed this... :-) Tested: Solaris 2.9 (shanti) Not failing on other machines
* [svn-r12562] Description:Quincey Koziol2006-08-1016-578/+1699
| | | | | | | | | | | | Initial revision to add support for "huge" objects in the heap (which are actually stored directly in the file, but are tracked with v2 B-tree that is accessed through heap header). Testing: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Mac OS X.4 (amazon)
* [svn-r12561] Description:Quincey Koziol2006-08-108-201/+331
| | | | | | | | | | | | Update code formatting a little and refactor to add a better mechanism for performing callbacks when removing records from the B-tree or deleting entire B-tree. Testing: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Mac OS 10.4 (amazon)
* [svn-r12560] Description:Quincey Koziol2006-08-101-3/+3
| | | | | | | Correct some typos in comments Testing: None needed
* [svn-r12559] Maintenance for VMSElena Pourmal2006-08-094-4/+143
| | | | | | | | | Added files created by James for user-define links to the command files Added new script check_h5jam.com to test h5jam/h5unjam; test script needs more work. Platforms tested: VMS server and test script only.
* [svn-r12558] Problem:Elena Pourmal2006-08-091-5/+5
| | | | | | | | | | Daily test for ttsafe failed on several machines due to the changed error stack. Solution: Updated the source code to use new error stack. Platforms tested: shanti
* [svn-r12555] 1. Erased a strange character added to this codeMuQun Yang2006-08-091-8/+35
| | | | | | | 2. Used to workaround solution to fix the cchunk10 failure caused by the MPICH bug Machine test: heping, mir
* [svn-r12554] New tests have been added to test the correctness of ↵MuQun Yang2006-08-096-87/+206
| | | | | | | | independent IO with file setview. To activite this test, add the command option -i. For example, at IBM AIX, type "poe testphdf5 -i" will test the library with independent IO with file setview. It simply replaces all the collective IO tests with independent IO with file setview.
* [svn-r12553] This check-in includes the following part of parallel ↵MuQun Yang2006-08-098-226/+544
| | | | | | | | | | | | | | | optimization codes: 1. Provide another option for users to do independent IO with MPI file setview(collectively) 2. With the request of collective IO from users, using Independent IO with MPI file setview if we find collective IO is not good for the applications for IO per chunk(multi-chunk IO) case. Previously we used pure independent IO and that actually performed small IO(IO each row) for this case. The recent performance study suggested the independent IO with file setview can acheieve significantly better performance than collective IO when not many processes participate in the IO. 3. For applications that explicitly choose to do collective IO per chunk case, the library won't do any optimization(gather/broadcast) operations. The library simply passes the collective IO request to MPI-IO. Tested at copper, kagiso, heping, mir and tungsten(cmpi and mpich) Kagiso is using LAM, t_mpi test was broken even. The cchunk10 test failed at heping and mir. I suspected it was an MPICH problem. Will investigate later. Everything passed at copper. at tungsten: the old cmpi bug(failed at esetw) is still there. Other tests passed. Some sequential fheap tests failed at kagiso.
* [svn-r12552] Description:Quincey Koziol2006-08-0712-206/+158
| | | | | | | | | | | More tweaks on fractal heap statistics, to better separate information about managed objects from information about "huge" objects. Also, clean up some compiler warnings, etc. on 64-bit platforms & Windows. Platforms tested: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago)
* [svn-r12551] Description:Quincey Koziol2006-08-079-105/+94
| | | | | | | | | | | Refactor fields in heap header to clean out information from dropped features and also group related fields together more nicely. Add fields to heap header for storing information about "huge" objects. Platforms tested: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago)
* [svn-r12550] Description:Quincey Koziol2006-08-075-40/+96
| | | | | | | | | | | Refactor fractal heap IDs to include "flag byte" as part of the ID. This byte will be used for the heap ID format version as well as flags to indicate whether the heap object is a "tiny"/normal/"huge" object (with storage mechanisms optimized for each type of object). Platforms tested: Linux/32 2.4 (chicago) Too minor to require h5committest
* [svn-r12549] Description:Quincey Koziol2006-08-0715-7304/+2511
| | | | | | | | | | Add support for entire heap deletion. Platforms tested: FreeBSD 4.11 (sleipnir) Linux/32 2.4 (chicago) Linux/64 2.4 (mir) Mac OS X (amazon)
* [svn-r12547] Added code to try harder to locate the MANIFEST file in more ↵Albert Cheng2006-08-061-3/+16
| | | | locations.
* [svn-r12545] Description:Quincey Koziol2006-08-042-0/+6
| | | | Add external link test file
* [svn-r12544] Description:Quincey Koziol2006-08-043-31/+73
| | | | | | | | | | | | | | Clean up compiler warnings/failures in test/links.c, especially when --disable-production flag used with --enable-group-revision Modify binary dumping in h5dump to clean up files created [a band-aid solution to not actually creating the files in the srcdir, but better than just leaving the files around... :-/ ] Tested: FreeBSD 4.11 (sleipnir) (w/ configure flags above) Too minor to require h5committest
* [svn-r12543] Description:Quincey Koziol2006-08-041-2/+2
| | | | | | | | | Re-run 'make trace' on this file, so API tracing doesn't issue compiler errors in development builds Tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12536] updated for the newly added file, ./tools/testfiles/nosuchfile.ls.Albert Cheng2006-08-041-0/+1
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* [svn-r12535] Added a new test for testing error handling of non-existing file.Albert Cheng2006-08-042-0/+8
| | | | | | nosuchfile.ls is the expected output. Tested: tg-ncsa and heping.
* [svn-r12534] Purpose:Albert Cheng2006-08-041-42/+24
| | | | | | | | | | | | | | | | | | | | | | | | Bug fixes. Description: There were MPI_init and MPI_finalize calls in the code of h5tools_fopen in parallel mode. But if a non-MPI tool is invoke to open a non-existing file, it tries to open the non-existing file with different VFD and eventaully came to try with the MPIO or the MPIPOSIX vfd, then it would try to do MPI_Init which would fail in the MPI environment if the a.out was not launched by MPI properly. Solution: MPI_Init and MPI_Finalize in general should be called by the MPI application, not called by a library subroutine as in the manner that was done here. Removed the MPI_init and MPI_Finalize calls. Used MPI_Initialized to verify if this has been launched as an MPI application in the proper manner before attempting to use the MPIO or the MPIPOSIX VFD to open the file. Tested: In tg-ncsa parallel, where it had failed explicitly and also in Heping, using both serial and parallel mode.
* [svn-r12533] Standardized the way path prefixes are passed to external links ↵James Laird2006-08-035-13/+95
| | | | | | using a LAPL. Now there are H5Pget and H5Pset functions for "elink_prefixes".
* [svn-r12532] Update windows projects with James and Quincey's new changes.MuQun Yang2006-08-035-4/+120
| | | | | | Found two minor bugs in h5dumpgentst.c and links.c. Have informed James. Should work with windows. Tests with MSVS 6.0 with visual fortran 6.6c.
* [svn-r12531] Fixed a bug that occurred with 64-bit compilers. Types were ↵James Laird2006-08-032-9/+9
| | | | | | | used inconsistently (the nlinks property was an int in some places and a size_t elsewhere--it is now a size_t everywhere).
* [svn-r12530] Skipped objcopy and links tests when certain file drivers are used.James Laird2006-08-032-5/+5
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* [svn-r12529] Fixed a couple of bugs that were causing trouble for Windows ↵James Laird2006-08-032-3/+3
| | | | | | builds (not sure why they weren't on other systems). Thanks, Kent!
* [svn-r12528] Added User-Defined links to the library.James Laird2006-08-02109-2068/+9339
| | | | | | | | | | | | | | Users can create external links using H5L_create_external(). These links point to an object in another HDF5 file. Users can alter the behavior of external links or create new kinds of links by registering callbacks using the H5L interface. Added tests, tools support, etc. Also a number of other, minor changes have been made (some restructuring of the H5L interface, for instance). Additional documentation and examples are forthcoming.
* [svn-r12526] Description:Elena Pourmal2006-08-023-1/+173
| | | | | | | | Added test script to test h5import tool; added new source file to the make.com file in the src directory. Platforms tested: Only h5import was tested on the VMS server
* [svn-r12525] Description:Quincey Koziol2006-08-0223-3147/+3006
| | | | | | | | | | | Refactored free space manager to use metadata cache for serialized free space sections. This speeds up the fractal heap test considerably... Tested: FreeBSD 4.11 (sleipnir) Linux 2.4/32 (chicago) Linux 2.4/64 (mir) Mac OS X (amazon)
* [svn-r12524] Changed number of arguments to H5Gcreate_expand. Should stop ↵James Laird2006-08-021-8/+13
| | | | | | the DT from dying again.
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