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* Add OAPL parameter to H5Rcreate_ APIsJordan Henderson2019-12-026-52/+83
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* Merge pull request #2063 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:vol_file_cmp ↵Neil Fortner2019-12-015-34/+163
|\ | | | | | | | | | | | | | | | | to develop * commit '40b2658b4b266b4dc65ec3db2897e0aaf54f8e42': Fix missing free in H5T__ref_mem_read() Fix bugs in H5VL file comparison code. Add short circuit success to H5VL_cmp_connector_cls(). Implement file comparison VOL callback. Other changes to allow references to work with non-native connectors. There is a bug somewhere.
| * Fix missing free in H5T__ref_mem_read()Neil Fortner2019-11-291-0/+2
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| * Fix bugs in H5VL file comparison code. Add short circuit success toNeil Fortner2019-11-283-10/+16
| | | | | | | | H5VL_cmp_connector_cls().
| * Implement file comparison VOL callback. Other changes to allowNeil Fortner2019-11-274-31/+152
| | | | | | | | | | references to work with non-native connectors. There is a bug somewhere.
* | Merge pull request #2059 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_nullref to ↵Jerome Soumagne2019-11-285-46/+304
|\ \ | |/ |/| | | | | | | | | develop * commit '6b68cc352ffabb5fe997db1eb52216b3ee80e669': H5R: fix H5Tconv to check for null references
| * H5R: fix H5Tconv to check for null referencesJerome Soumagne2019-11-265-46/+304
| | | | | | | | | | | | Valid for both deprecated and non-deprecated references Update test
* | Merge pull request #2050 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:point_spi to ↵Neil Fortner2019-11-271-17/+113
|\ \ | | | | | | | | | | | | | | | | | | develop * commit 'ad2fbb022e096233444489e69b93343a4b7e9631': Add support for point selections to H5S_select_project_intersection.
| * | Add support for point selections to H5S_select_project_intersection.Neil Fortner2019-11-271-17/+113
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* | | Merge pull request #2057 in HDFFV/hdf5 from ↵Jerome Soumagne2019-11-2716-103/+88
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | ~JSOUMAGNE/hdf5:topic_get_file_id_native to develop * commit 'f46494ffd8449fc610798c8af312362608029d3d': Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
| * | | Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILEJerome Soumagne2019-11-2716-103/+88
| | |/ | |/| | | | | | | Remove H5F__get_file_id() and use only private routine instead
* | | Merge pull request #2062 in HDFFV/hdf5 from ↵David Young2019-11-2752-504/+311
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DYOUNG/vchoi_fork:revert-c99-designated to develop * commit '0108072f7a746b809952d5cc560577f931b64f71': Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf3)" Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility."
| * | | Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings ↵David Young2019-11-2752-498/+314
| | | | | | | | | | | | | | | | level and fixing some code.' (commit 5c911d8baf3)"
| * | | Revert "Oops, remove more C99 designated initializers for VS 2010 ↵David Young2019-11-274-14/+5
|/ / / | | | | | | | | | | | | | | | compatibility." This reverts commit f907b511d06612dafc7814a7c30f2f3d2b76d52b.
* | | Merge pull request #2045 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:select_adjust ↵Neil Fortner2019-11-269-113/+276
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '4e12984b77cdd7615843d94f8de8d54db27476ac': Move checking for zero offset in selection adjust calls to the selection callbacks. This makes the procedure for checking it consistent across selection types and between _s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package. Replace H5Sselect_adjust_u() and H5Shyper_adjust_s() with H5Sselect_adjust. Implement "adjust_s" callback for all selection types. Add range checking to H5Sselect_adjust().
| * | | Move checking for zero offset in selection adjust calls to the selection ↵Neil Fortner2019-11-183-87/+100
| | | | | | | | | | | | | | | | | | | | | | | | | | | | callbacks. This makes the procedure for checking it consistent across selection types and between _s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package.
| * | | Replace H5Sselect_adjust_u() and H5Shyper_adjust_s() withNeil Fortner2019-11-189-60/+210
| | | | | | | | | | | | | | | | | | | | H5Sselect_adjust. Implement "adjust_s" callback for all selection types. Add range checking to H5Sselect_adjust().
* | | | Merge pull request #2054 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vol_trivial ↵Dana Robinson2019-11-264-23/+23
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '9a93ecac522d9032efd9cdc39ff0550412e54565': Trivial parameter renaming in VOL API calls.
| * | | | Trivial parameter renaming in VOL API calls.Dana Robinson2019-11-254-23/+23
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* | | | Merge pull request #2055 in HDFFV/hdf5 from ↵David Young2019-11-254-5/+14
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit 'f907b511d06612dafc7814a7c30f2f3d2b76d52b': Oops, remove more C99 designated initializers for VS 2010 compatibility.
| * | | | Oops, remove more C99 designated initializers for VS 2010 compatibility.David Young2019-11-254-5/+14
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* | | | | Merge pull request #2030 in HDFFV/hdf5 from ↵David Young2019-11-2552-314/+498
|\ \ \ \ \ | |/ / / / | | / / / | |/ / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit '62208b056a09c01855fbac7f75146be58ad6bfe5': (44 commits) Add an #include to get a function declaration. Don't use C99 designated initializers, they're not compatible with Visual Studio 2010. Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*. This is more code that may not compile with VS2010, *sigh sigh*. Always warn on maybe-uninitialized. -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using. Only promote maybe-uninitialized warnings to errors on GCC 8. Even on GCC 8, there may be false positives at low optimization levels? I need to check. Only use -Werror=cast-function-type with GCC 8 and later. Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags. Add new source files to CMakeLists.txt. Mention the -Werror= flags in libhdf5.settings.in. free -> HDfree Promote decleration-after-statement warnings to errors. Quiet decleration-after-statement warnings. Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements. Document H5D__chunk_mem_xfree_wrapper(). Undo accidental test deletion. Oops, delete a debug printf that snuck in here. Undo my changes to the HD macros, hadn't really intended those to be on this branch.... Make errors of some more warnings. Move disabled warnings to DEVELOPER_WARNING_CFLAGS. Put just one warning option on a line, and sort some of the options. Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *. Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc. ...
| * | | Add an #include to get a function declaration.David Young2019-11-251-0/+1
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| * | | Merge remote-tracking branch 'hdf5/develop' into add-werror-and-squash-someDavid Young2019-11-2531-180/+667
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* | | | Merge pull request #2029 in HDFFV/hdf5 from ~CHOGAN/hdf5:feature/cx_lcpl to ↵Chris Hogan2019-11-2511-17/+285
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '4ce9c10c568ff81ebd4eb7585039cbe3c40d1718': Add documentation for H5CX_get_ohdr_flags Add object header flags to API context Use major error code of calling package Handle H5CX_state_t for lcpl Add character encoding to lcpl context Change LC property name from 'create_intermediate_group' to 'intermediate_group' Use API context to store/retrieve LCPL when creating intermediate groups
| * | | | Add documentation for H5CX_get_ohdr_flagsChris Hogan2019-11-151-0/+13
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| * | | | Add object header flags to API contextChris Hogan2019-11-144-5/+72
| | | | | | | | | | | | | | | | | | | | | | | | | Add missing DCPL to API context state Replace a couple LCPL H5P_get calls with H5CX_get_*
| * | | | Use major error code of calling packageChris Hogan2019-11-081-2/+2
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| * | | | Handle H5CX_state_t for lcplChris Hogan2019-11-041-0/+21
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| * | | | Add character encoding to lcpl contextChris Hogan2019-11-043-43/+54
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| * | | | Change LC property name from 'create_intermediate_group' to 'intermediate_group'Chris Hogan2019-10-301-9/+9
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| * | | | Use API context to store/retrieve LCPL when creating intermediate groupsChris Hogan2019-10-2910-11/+167
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* | | | | Merge pull request #2043 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:seq_list_fix ↵Neil Fortner2019-11-201-1/+1
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'c104f4cb87a1558ab6a772967887738dc9800f0d': Modify H5Ssel_iter_get_seq_list() to accept iterators that have reached the end of iteration (returning zero sequences). Previously it could cause an assertion failure.
| * | | | | Modify H5Ssel_iter_get_seq_list() to accept iterators that have reachedNeil Fortner2019-11-151-1/+1
| | |_|_|/ | |/| | | | | | | | | | | | | | | | | | the end of iteration (returning zero sequences). Previously it could cause an assertion failure.
* | | | | Merge pull request #2048 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to ↵Allen Byrne2019-11-1911-39/+72
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'efe234c832581d16d3da41fe71b50ef71fd44acc': Minor correction Update list of tested platforms Add VS2019 support
| * | | | | Minor correctionAllen Byrne2019-11-181-1/+1
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| * | | | | Update list of tested platformsAllen Byrne2019-11-181-23/+8
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| * | | | | Add VS2019 supportAllen Byrne2019-11-1811-16/+64
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* | | | | Merge pull request #2047 in HDFFV/hdf5 from h5_private_prototype_fix to developRichard Warren2019-11-181-1/+1
|\ \ \ \ \ | |_|_|_|/ |/| | | | | | | | | | | | | | * commit 'c440e05de82b224a0a6b042ec8a27accdc1e48ae': Fixed the H5_mpi_get_bigio_count function prototype
| * | | | Fixed the H5_mpi_get_bigio_count function prototypeRichard Warren2019-11-181-1/+1
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* | | | Merge pull request #2042 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to ↵Allen Byrne2019-11-151-1/+1
|\ \ \ \ | |/ / / |/| | | | | | | | | | | | | | | | | | | develop * commit 'c2fd059704e9232a3d3221ddd0c84803256baec2': Correct file extension
| * | | Correct file extensionAllen Byrne2019-11-141-1/+1
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* | | Merge pull request #2033 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:public_spi to ↵Neil Fortner2019-11-137-122/+308
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'db6eab893e5f027f0b535316e0e7a9abe9ff8619': Implement public H5Sselect_project_intersection(). Updated internal algorithm to (optionally) avoid sharing selection data structures. Tested internal code (including with valgrind) by setting VDS code to avoid sharing selection, has since been changed to share selection for performance, so this code is not yet tested in regression tests. API has not been tested.
| * | | Implement public H5Sselect_project_intersection(). Updated internalNeil Fortner2019-11-137-122/+308
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | algorithm to (optionally) avoid sharing selection data structures. Tested internal code (including with valgrind) by setting VDS code to avoid sharing selection, has since been changed to share selection for performance, so this code is not yet tested in regression tests. API has not been tested.
| | | * Don't use C99 designated initializers, they're not compatible withDavid Young2019-11-253-16/+24
| | | | | | | | | | | | | | | | Visual Studio 2010.
| | | * Quiet some more maybe-uninitialized warnings---each is a false positive,David Young2019-11-223-3/+16
| | | | | | | | | | | | | | | | | | | | *sigh*. This is more code that may not compile with VS2010, *sigh sigh*.
| | | * Always warn on maybe-uninitialized. -Wincompatible-pointer-types was notDavid Young2019-11-221-2/+2
| | | | | | | | | | | | | | | | available until GCC 5, so enable it only if that's the GCC version we're using.
| | | * Only promote maybe-uninitialized warnings to errors on GCC 8. Even onDavid Young2019-11-221-1/+7
| | | | | | | | | | | | | | | | | | | | GCC 8, there may be false positives at low optimization levels? I need to check.
| | | * Only use -Werror=cast-function-type with GCC 8 and later.David Young2019-11-221-1/+1
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| | | * Put all of the -W options back into the order I found them in so that it'sDavid Young2019-11-221-29/+23
| | | | | | | | | | | | | | | | easier to compare old and new config/gnu-flags.
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