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* Added missing casts for the return value of H5I_object_verify().Dana Robinson2017-05-243-9/+9
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* Merge pull request #531 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-05-2315-77/+198
|\ | | | | | | | | | | | | * commit '416ad00182e2d0fccc09d60a6da95aef8ad94d0e': HDFFV-8611 add autotools test Remove obsolete function HDFFV-8611 change h5repack to save the root group creation order Added test and new arguments to control the the input file parsing.
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2017-05-235-15/+27
| |\ | |/ |/| | | | | | | | | | | | | * commit '9fc2b3ef8e7933da716e2d2f832e93d8fc8023c0': add linking flag to cmake, does not fix the issue, still disabled shared with fortran add documention comments for shared Fortran Fix on OSX Fix for shared fortran libraries on mac (HDFFV-2772). Fix for shared fortran libraries on mac (HDFFV-2772). Fix for shared fortran libraries on mac (HDFFV-2772).
* | Merge pull request #532 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2017-05-235-15/+27
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit '57ab1e7d6945c45107ebdd945bb89951ec90b8f1': add linking flag to cmake, does not fix the issue, still disabled shared with fortran add documention comments for shared Fortran Fix on OSX Fix for shared fortran libraries on mac (HDFFV-2772). Fix for shared fortran libraries on mac (HDFFV-2772). Fix for shared fortran libraries on mac (HDFFV-2772).
| * | add linking flag to cmake, does not fix the issue, still disabled shared ↵M. Scot Breitenfeld2017-05-231-0/+5
| | | | | | | | | | | | with fortran
| * | add documention comments for shared Fortran Fix on OSXM. Scot Breitenfeld2017-05-231-5/+7
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| * | Fix for shared fortran libraries on mac (HDFFV-2772).M. Scot Breitenfeld2017-05-221-2/+3
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| * | Fix for shared fortran libraries on mac (HDFFV-2772).M. Scot Breitenfeld2017-05-221-0/+6
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| * | Fix for shared fortran libraries on mac (HDFFV-2772).M. Scot Breitenfeld2017-05-184-13/+11
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| | * HDFFV-8611 add autotools testAllen Byrne2017-05-221-1/+7
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| | * Remove obsolete functionAllen Byrne2017-05-221-32/+0
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| | * HDFFV-8611 change h5repack to save the root group creation orderAllen Byrne2017-05-2213-44/+191
| |/ |/| | | Added test and new arguments to control the the input file parsing.
* | Merge pull request #527 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-05-198-16/+31
|\ \ | |/ |/| | | | | | | | | * commit '973aebe25f87b84ff6dd3d9eca51b76643090564': Add debug trace commands HDFFV-9055 Correct file generator Added note about 9055 and 10128, 9995 not needed
| * Add debug trace commandsAllen Byrne2017-05-191-4/+17
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| * HDFFV-9055 Correct file generatorAllen Byrne2017-05-186-3/+3
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| * Added note about 9055 and 10128, 9995 not neededAllen Byrne2017-05-181-9/+11
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* Merge pull request #521 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-05-178-272/+231
|\ | | | | | | | | | | | | | | * commit 'fcc56184f1699fc1d35b042acb1388cc76b8ea16': Whitespace Move execeutable command after declaration HDFFV-9055 add test files HDFFV-9055 Handle H5T_ARRAY types Create variables just for diff_array function Whitespace updates
| * WhitespaceAllen Byrne2017-05-171-6/+6
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| * Move execeutable command after declarationAllen Byrne2017-05-171-1/+1
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| * HDFFV-9055 add test filesAllen Byrne2017-05-176-9/+54
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| * HDFFV-9055 Handle H5T_ARRAY typesAllen Byrne2017-05-161-257/+171
|/ | | | Create variables just for diff_array function Whitespace updates
* Merge pull request #519 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-05-1614-127/+153
|\ | | | | | | | | | | * commit '71637634ac96b6167b384ebb461ce3b9ea66b4f8': HDFFV-9995 Clarify help text HDFFV-10128 Fixed string length with no null fixed
| * HDFFV-9995 Clarify help textAllen Byrne2017-05-1611-111/+144
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| * HDFFV-10128 Fixed string length with no null fixedAllen Byrne2017-05-163-16/+9
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* Merge pull request #516 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2017-05-156-41/+108
|\ | | | | | | | | | | * commit '56c3ec98207bb6c4b3e6a7b9523c2a1e849879c3': HDFFV-10128 add test to check null term Test is another dataset HDFFV-10128 Fix null term strings
| * HDFFV-10128 add test to check null termAllen Byrne2017-05-156-37/+94
| | | | | | Test is another dataset
| * HDFFV-10128 Fix null term stringsAllen Byrne2017-05-121-7/+17
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* | Merge pull request #515 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2017-05-152-344/+831
|\ \ | |/ |/| | | | | | | | | develop * commit '54dff331778a660824961fdf6359e4eae998a13c': Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
| * Incorporate additional code changes for the H5DOread_chunk patch from GE ↵Vailin Choi2017-05-152-344/+831
|/ | | | | | | | | | Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
* Merge pull request #512 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to developDana Robinson2017-05-122-5/+125
|\ | | | | | | | | * commit 'f95ef72a5e9827dfa63e4722938a58a8c9d686c0': Merged HDFFV-10187 direct chunk overwrite bugfix to develop from 1.10 branch.
| * Merged HDFFV-10187 direct chunk overwrite bugfix to develop from 1.10 branch.Dana Robinson2017-05-122-5/+125
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* Merge pull request #506 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-05-112-0/+4
|\ | | | | | | | | * commit '0cb8152b8e97d659e076b42340509c41b3919754': HDFFV-10186 Need to pull the flag into the script
| * HDFFV-10186 Need to pull the flag into the scriptAllen Byrne2017-05-112-0/+4
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* Merge pull request #503 in HDFFV/hdf5 from ↵Allen Byrne2017-05-1026-147/+601
|\ | | | | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:bugfix/HDFFV-10186-tbitnopaque-test to develop * commit 'ec0935a924a84b18b29473b4fcec7c3f4e1aca76': HDFFV-10186 xml test also needs endianess aware files HDFFV-10186 - h5tools_str_append is not printf HDFFV-10186 braces formatting Fix reference file contents HDFFV-10186 Add endianess to bitfield and fix tests
| * HDFFV-10186 xml test also needs endianess aware filesAllen Byrne2017-05-105-7/+123
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| * HDFFV-10186 - h5tools_str_append is not printfAllen Byrne2017-05-101-3/+3
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| * HDFFV-10186 braces formattingAllen Byrne2017-05-101-72/+59
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| * Fix reference file contentsAllen Byrne2017-05-101-1/+1
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| * HDFFV-10186 Add endianess to bitfield and fix testsAllen Byrne2017-05-1023-83/+434
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* | Merge pull request #505 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2017-05-101-1/+1
|\ \ | |/ |/| | | | | * commit 'c8a5520d3aa3a526460c81507f2f985dc534b14f': Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c - changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
| * Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c -lrknox2017-05-101-1/+1
|/ | | | | changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
* Merge pull request #501 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-05-104-281/+229
|\ | | | | | | | | * commit 'e4e261173f85de6f83651abd6950793d7b930a20': HDFFV-10186 more whitespace formatting
| * HDFFV-10186 more whitespace formattingAllen Byrne2017-05-104-281/+229
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* Merge pull request #497 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2017-05-107-807/+746
|\ | | | | | | | | * commit '4f36f613a6de09d8ec197b7e5a4a72dbdb9417a2': HDFFV-10186 Whitespace change Mostly tabs to spaces Remove Modifications comments
| * HDFFV-10186 Whitespace changeAllen Byrne2017-05-097-807/+746
| | | | | | | | Mostly tabs to spaces Remove Modifications comments
* | Merge pull request #498 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2017-05-091-0/+1
|\ \ | |/ |/| | | | | | | | | develop * commit '8482314d7db83c47947af8ca50457cdb1ddae366': Fix for HDFFV-10051 Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test.
| * Fix for HDFFV-10051Vailin Choi2017-05-091-0/+1
|/ | | | | Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test.
* Merge pull request #494 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2017-05-094-9/+172
|\ | | | | | | | | | | | | | | develop * commit 'd436db6c6efdfe7e9dbe06a642715116ef0eb5e3': Fix for the two issues reported in HDFFV-10051 Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu. Fix for the two issues reported in HDFFV-10051: (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
| * Fix for the two issues reported in HDFFV-10051Vailin Choi2017-05-093-14/+50
| | | | | | | | | | Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
| * Fix for the two issues reported in HDFFV-10051:Vailin Choi2017-05-073-3/+130
| | | | | | | | | | | | | | | | | | | | | | (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
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