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* [svn-r23748] HDFFV-8461: Add Windows /MT supportAllen Byrne2013-06-102-12/+31
| | | | | This adds the UserMacros.cmake support needed. Correct Properties tag name
* [svn-r23746] Correct Windows setting after tests on windowsAllen Byrne2013-06-101-1/+1
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* [svn-r23745] HDFFV-8461: Add Windows /MT supportAllen Byrne2013-06-1037-24/+170
| | | | This adds the UserMacros.cmake support needed.
* [svn-r23744] HDFFV-8468: Remove conversion tests which generate access ↵Allen Byrne2013-06-101-1/+5
| | | | violations on Windows 8 64
* [svn-r23741] Snapshot version 1.9 release 153HDF Tester2013-06-0913-26/+26
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* [svn-r23740] HDFFV-8447: subsetting broke data output file option.Allen Byrne2013-06-076-8/+35
| | | | Reviewed in H5T-59, tested local linux
* [svn-r23737] HDFFV-8434: Use lowecase for whether in confiure.acAllen Byrne2013-06-052-6/+6
| | | | Trival change
* [svn-r23736] HDFFV-8437: CMake so version numbering - changed order of ↵Allen Byrne2013-06-051-2/+2
| | | | | | values to match libtool values. Tested: local linux
* [svn-r23735] HDFFV-8445: unregonized character warning solved by changing ↵Allen Byrne2013-06-051-1/+1
| | | | | | '\/' to '\\'. Tested: Windows
* [svn-r23733] HDFFV-8366: Patches tested by Larry using h5committest, it ↵Allen Byrne2013-06-053-0/+6
| | | | creates the intermediate testfiles folder first.
* [svn-r23718] Snapshot version 1.9 release 152HDF Tester2013-05-2613-26/+26
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* [svn-r23717] Description:Quincey Koziol2013-05-231-1/+1
| | | | | | | Fix return value from FAIL to NULL, to match the routines type. Tested on: Mac OSX/64 10.8.3 (amazon)
* [svn-r23715] Bug Fix: HDFFV-8247Joel Plutchak2013-05-221-4/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Failure to write fill values to the user's buffer when reading unallocated chunks from datasets that have a fill value set to H5D_FILL_VALUE_DEFAULT. A consequence of this was the reporting of spurious data values in h5dump and h5diff output. Solution: Added check for fill value of H5D_FILL_VALUE_DEFAULT whenever fill value setting was checked to decide whether or not to fill. This effectively treats H5D_FILL_VALUE_DEFAULT the same as H5D_FILL_VALUE_USER rather than H5D_FILL_VALUE_UNDEFINED. Tested: h5committest (platypus, ostrich, jam-pp, koala) ran successfully (fillval test was modified to reveal and check for this error) Note: RELEASE.txt was previously changed to reflect this fix. This checkin was of a cleaner version of the code, but mostly to get this full log message entered. -This line, and those below, will be ignored-- M H5Dchunk.c
* [svn-r23713] Description:Quincey Koziol2013-05-2165-1114/+1329
| | | | | | | | | | Clean up warnings, switch library code to use Standard C/POSIX wrapper macros, remove internal calls to API routines, update checkapi and checkposix scripts. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN Big-Endian Linux/64 (ostrich)
* [svn-r23710] I added H5Pencdec.c to make.com. I added Raymond Lu2013-05-202-1/+10
| | | | | | | | | H5_HAVE_DIRENT_H H5_HAVE_LIBDL H5_HAVE_SETJMP to h5pubconf.h. Not tested yet.
* [svn-r23708] Snapshot version 1.9 release 151HDF Tester2013-05-1913-26/+26
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* [svn-r23707] Vagrind memleak: bufferes only cleaned up if there was an error.Allen Byrne2013-05-151-0/+9
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* [svn-r23698] Description:inactive/trunk_merge_coverityQuincey Koziol2013-05-131-330/+254
| | | | | | | | Revert r23695, which breaks big-endian tests on ostrich, etc. Will investigate and submit correction later. Tested on: BE & LE Linux systems (ostrich, koala, jam, emu)
* [svn-r23695] Description:Quincey Koziol2013-05-1113-563/+731
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings in H5Tconv.c (down to _only_ 9000 lines of output now!) Merge changes from Coverity branch back to trunk: r20684: Fix for coverity bug #1721 which was due to the fix for coverity bug #943. r20685: Use HDstrncpy. --gh r20761: Purpose: Fix valgrind issues Description: Free image_data and data as appropriate in test_image. r20762: Purpose: Fix coverity issue 600 Description: Add check for return value of H5O_close in H5Ocopy. Also cleaned up various warnings. r20763: Purpose: Fix valgrind issues with h5stat Description: Modified h5stat to free "iter" before exit, and free "hand" before exit if parse_command_line exits directly. r20764: fixed coverity issues: 69, 327, 614, 684, 685, 696, 697, 1681, 967, 826, 660, 80 r20765: Fixed coverity bug 668 Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning. No actual integer overflow tests are performed since it's just a test program but I did add a check that n_elements is >= 1. I also changed an error condition from doing its own close and returning -1 to "goto out;" like the rest of the program. r20766: Fixed coverity bug 667 Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning. No actual integer overflow tests are performed since it's just a test program. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN (h5committest upcoming)
* [svn-r23692] Remove INSTALL_VMS file.Allen Byrne2013-05-091-18/+28
| | | | Added if block around INSTALL files
* [svn-r23691] Fix valgrind leak by closing faplAllen Byrne2013-05-091-0/+3
| | | | Tested: local linux
* [svn-r23685] Issue 8380 H5Zunregister caused seg fault. I simplied the ↵Raymond Lu2013-05-084-90/+58
| | | | | | iteration process over datasets, groups, and files as Quincey suggested. I also removed H5I_search that I introduced in last commit but didn't actually used it. Tested on jam and koala - simple change.
* [svn-r23675] Issue 8380 - H5Zunregister caused seg fault. This is the ↵Raymond Lu2013-05-063-86/+120
| | | | | | | | | followup commit. Quincey reviewed my previous commit and suggested me to use H5I_iterate to iterate through all opened objects in H5Z_unregister. I changed it in this commit. Tested with h5committest.
* [svn-r23669] Snapshot version 1.9 release 150HDF Tester2013-05-0513-26/+26
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* [svn-r23668] Added fix report for Jira issue HDFFV-8247, and removed it fromJoel Plutchak2013-05-031-8/+6
| | | | the "Known Problem" section.
* [svn-r23667] Removed H5E call.Joel Plutchak2013-05-031-20/+1
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* [svn-r23666] Fix for fill value problem for chunked files with mixed ↵Joel Plutchak2013-05-021-3/+5
| | | | allocated/unallocated chunks.
* [svn-r23665] Added test cases to expose potential fill value issues.Joel Plutchak2013-05-021-0/+281
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* [svn-r23662] Bug fix: HDFFV-8236Albert Cheng2013-05-021-24/+28
| | | | | | | | | | | | | Some files are not distributed when release tarball is created by bin/release according to MANIFEST. But --enable-build-all compiles them in test/. Solution: Distributed those missing files for now. Need to resolve if these files should be distributed or not. And if not, fix --enable-build-all NOT to compile them. Tested: use bin/release to generate the tarball and run --enable-build-all with it. Error is gone and all passed.
* [svn-r23656] Issue 8380 H5Zunregister caused seg fault: I added some ↵Raymond Lu2013-04-2914-28/+595
| | | | | | | | | protection measures: 1. If any opened object uses the filter, let it fail. 2. Flush all opened files to push any cached data to files. Tested with h5committest.
* [svn-r23651] Add MPI configuration information to includes and libsAllen Byrne2013-04-292-6/+22
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* [svn-r23649] Correct file reference in pack listAllen Byrne2013-04-297-389/+549
| | | | Rename and update CMake docs.
* [svn-r23642] Snapshot version 1.9 release 149HDF Tester2013-04-2813-26/+26
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* [svn-r23638] Removed INSTALL_MinGW because, Albert Cheng2013-04-262-270/+0
| | | | | | | | | 1. The file states that: NOTE: We are no longer actively supporting MinGW as of 1.8.5. 2. It is not tested for v1.8.11. 3. If we ever supports it again, it can be "restored" from previous release (e.g. v1.8.10).)
* [svn-r23618] Bug fix: HDFFV-8390Albert Cheng2013-04-242-4/+4
| | | | | | | | Threadsafe works in v1.8.10 release. But it fails v1.8.11-pre1 tarball in configure stage now. There was a typo in the configure around the checking of pthread library. Fixed it. Tested: AIX and also h5committested.
* [svn-r23614] Remove subfolders for includesAllen Byrne2013-04-235-11/+11
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* [svn-r23607] Purpose:Albert Cheng2013-04-221-1/+1
| | | | | | | | | | | Daily test failed in koala with parallel and v16compat API from the previous commit r22735. Descriptoin: Changed to use H5Dopen2() instead of H5Dopen(). Tested: koala --enable-parallel --with-default-api-version=v16. No h5committest test since this is limited to parallel test program.
* [svn-r23597] Description:Quincey Koziol2013-04-171-404/+290
| | | | | | | | | Bring r20683 from Coverity branch back to trunk: Isues 1309-1333: Changed strcpy/strcat to strncpy/strncat with maximum size expected. Tested on: Max OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
* [svn-r23590] I added SunOS 5.11 (emu) as a newly supported system.Raymond Lu2013-04-151-0/+2
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* [svn-r23585] changed the integer kind in the enum to satisfy g95.Scot Breitenfeld2013-04-141-4/+9
| | | | Tested: jam (g95, gfortran)
* [svn-r23584] Description:Quincey Koziol2013-04-131-6/+77
| | | | | | | Update with new compiler warnings for gcc 4.8.x Tested on: Mac OSX/64 10.8.3 (amazon) w/gcc 4.8.0
* [svn-r23580] I updated the compiler info, system info, and HDF5 support ↵Raymond Lu2013-04-121-27/+17
| | | | | | table of fred, emu, and ostrich. No test is needed.
* [svn-r23576] added missing argument in check call.Scot Breitenfeld2013-04-111-1/+1
| | | | tested: jam (g95,gcc))
* [svn-r23572] Removed inappropriate executable properties from a few files. ↵Dana Robinson2013-04-104-0/+0
| | | | | | | | These are often added by Windows text editors. Tested on: jam (just tested to make sure it builds - no code changes)
* [svn-r23561] I added the info about dynamically loaded filter.Raymond Lu2013-04-081-0/+3
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* [svn-r23555] Bug fix: HDFFV-8358Albert Cheng2013-04-051-54/+35
| | | | | | | | | | | | | | | | | | | | | | The previous change set exec_prefix, libdir and includedir to actual values. That removed the option for user to hand edit just the first prefix=... to make "everything" to work. Changed h5redeploy to do this by default: ## Installation directories: ## ## prefix architecture-independent files. ## ## exec_prefix architecture-dependent files, default is <prefix>. ## ## libdir libraries, default is <exec_prefix>/lib. ## ## includedir header files, default is <prefix/include>. ## ############################################################################ This allows users to just change the first line of prefix=<...> and the effect will change libdir and includedir too. This was also try to accommodate the -prefix option of h5XX. Unfortunately, after changing h5redeploy, I found out the h5XX code to support -prefix actually does not provide the stated efffect. This will be fixed in the release. Tested: h5committested plus hand test.
* [svn-r23554] Added HDFFV-8247 to the Known Problems section.Joel Plutchak2013-04-051-0/+8
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* [svn-r23549] Description:Quincey Koziol2013-04-0414-106/+102
| | | | | | | | More misc. cleanups, but main change is to make an "extern" header file for the plugin interface. Tested on: Mac OSX/64 10.8.3 (amazon)
* [svn-r23548] Fix typo in macro end macroAllen Byrne2013-04-041-1/+1
| | | | Warning only.
* [svn-r23547] Windows plugins will always be "dll"'s.Allen Byrne2013-04-042-2/+2
| | | | | | CMake also uses ";" as a separator - escape it Tested: windows
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