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* [svn-r9615] Purpose:Quincey Koziol2004-12-043-6/+130
| | | | | | | | | | | New feature Description: Add callback iteration routine to skip lists. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9614] Purpose:Pedro Vicente Nunes2004-12-031-21/+34
| | | | | | | | | | | | | | | | | | new feature Description: when requesting a filter for all datasets and the filter cannot be applied for one dataset use the original dcpl withou filter and print a warning this check was done previously with buit in functions for szip that are now in the library Solution: Platforms tested: linux solaris aix Misc. update:
* [svn-r9611] Purpose:Quincey Koziol2004-12-032-11/+4
| | | | | | | | | | | | | Bug fix Description: Correct typo in ia64 configure script. Update intel compiler detection to handle Itanium versions of compilers Platforms tested: Teragrid machine (tg-login) w/icc 7.1 & 8.x Linux 2.4 (verbena) w/icc
* [svn-r9609] Purpose: Small bug fixElena Pourmal2004-12-011-2/+0
| | | | | | | | | | | | Description: Build failed in hl/test directory on OSF1 at PSC Solution: It looks like that two extra blank lines after CPPGLAGS definition caused the syntax error I deleted the lines, and compilation went through Platforms tested: lemiuex, heping Misc. update:
* [svn-r9608] Purpose:Albert Cheng2004-12-011-0/+2
| | | | | | | Added comment of the fix. Platforms tested: only tested in heping as it is only a comment added.
* [svn-r9605] Purpose:Pedro Vicente Nunes2004-11-301-5400/+4203
| | | | | | | | | | | | | added a configure generated by autoconf 2.53 Description: Solution: Platforms tested: linux (fuss) Misc. update:
* [svn-r9603] Purpose:Quincey Koziol2004-11-303-2/+2
| | | | | | | | | | | | | | | | Bug fix Description: Correct integer overflow situation for computing the size of a dataset. Solution: Rachet one of the dimensions down far enough that the total size of the dataset's raw data doesn't overflow a 64-bit int. Platforms tested: FreeBSD 4.10 (sleipnir) IRIX 6.? (tesla) w/-n32 Too minor to require h5committest
* [svn-r9601] Purpose:Quincey Koziol2004-11-303-25/+133
| | | | | | | | | | | New feature Description: Allow skip list keys to be strings (needed for property list support) Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r9598] Purpose:Quincey Koziol2004-11-294-16/+82
| | | | | | | | | | | | | New internal feature Description: Add a "release" routine to the skip lists, which releases all the nodes in the skip list, but keeps the skip list active. Platforms tested: FreeBSD 4.10 (sleipnir) Linux 2.4 (verbena) Too minor to require h5committest
* [svn-r9596] Purpose:Quincey Koziol2004-11-295-218/+170
| | | | | | | | | | | | | Code optimization Description: Retarget metadata cache code from using TBBT routines to using new skiplist routines, for a reasonable speedup (when dealing with dirty metadata) Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9592] Purpose:Quincey Koziol2004-11-291-2/+3
| | | | | | | | | | | | | | | | | Bug fix Description: Re-work array of 'forward' pointers in a way that makes the PGI compiler more happy. Solution: Change from 'H5SL_node_t *forward[1]' to 'H5SL_node_t **forward' and change how array of forward pointers is dealt with. Platforms tested: Linux 2.4 (verbena) w/PGI FreeBSD 4.10 (sleipnir) Configuration not tested w/h5committest
* [svn-r9591] Purpose:Quincey Koziol2004-11-291-1/+1
| | | | | | | | | | | | Bug fix Description: Add dependency on the HDF5 library as well as the high-level library for rebuilding tests. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r9587] Purpose:Quincey Koziol2004-11-281-8/+13
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Correct off-by-on error which could cause invalid # of levels to be used for a skip list node, in rare circumstances. Change from srandom()/random() to more portable srand()/rand() routines for random # generation. Pre-compute the probability factor for computing the level of new nodes, for a minor speedup. Platforms tested: FreeBSD 4.10 (sleipnir) IRIX64 6.5 (modi4) Solaris 2.8 (sol) AIX 5.1(?) (copper)
* [svn-r9585] Purpose:Quincey Koziol2004-11-272-39/+25
| | | | | | | | | | | | | | Code optimization Description: Begin de-orbital burn of threaded, balanced binary tree code use by switching file open object code over to using them. Initial benchmarks show that skip lists are 5-10x faster than our TBBT code... Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9584] Purpose:Quincey Koziol2004-11-272-5/+6
| | | | | | | | | | | | | | | Code optimization Description: Revise mechanism for calling H5open/H5check to better avoid calling them from internal libray code. Only copy a datatype's group entry information if it has some. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9580] Purpose:Quincey Koziol2004-11-2714-27/+1353
| | | | | | | | | | | | | | | | | | | | Add new internal data structure Description: Add an implementation of skip lists to the library (see comment in src/H5SL.c for references to the papers describing them) as a potential replacement for our current threaded, balanced binary tree container. Skip lists are much simpler to implement and should be faster to use. Also, added new error codes to release branch, so bump the minor version number to indicate that the library is no longer perfectly compatible with the 1.6.3 release. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require further testing (the skip lists aren't actually used by any library code yet)
* [svn-r9579] Purpose:Pedro Vicente Nunes2004-11-261-1/+1
| | | | | | | | | | | | | | | | bug fix Description: one header file that was removed from the repo was not removed from the makefile.in, causing make install to fail Solution: removed the file from the public header file list to be installed Platforms tested: linux Misc. update:
* [svn-r9576] Purpose:Albert Cheng2004-11-251-1/+16
| | | | Added an explanation of ASCII printing for h5dump.
* [svn-r9575] Purpose:MuQun Yang2004-11-243-277/+642
| | | | | | | | | | | | | | | | Adding testing code for collective IO implementation Description: Won't affect testing HDF5 library. Not tested yet, only check in for debugging purpose. Solution: Platforms tested: Linux 2.4 + mpich 1.2.6 Aix 5.1 + mpcc_r Misc. update:
* [svn-r9574] Purpose:MuQun Yang2004-11-242-13/+37
| | | | | | | | | | | | | | | Adding code for using MPI derived datatype to handle collective IO Description: No testing yet, won't affect the library. Solution: Platforms tested: linux 2.4 + mpich 1.2.6 Aix 5.1 + mpcc_r Misc. update:
* [svn-r9572] Purpose:Pedro Vicente Nunes2004-11-241-112/+112
| | | | | | | | | | | | | | | | | bug fix Description: the routine for applying the layout for the new file of h5repack was not handling the logic correctly in cases where an input layout was not set Solution: changed the logic so that the original layout is preserved (this bug was introduced in the last change, October 19 04) Platforms tested: linux (small change) Misc. update:
* [svn-r9571] Purpose:Pedro Vicente Nunes2004-11-241-32/+9
| | | | | | | | | | | | | | bug fix Description: the string build of some test files using "srcdir" was not done properly Solution: Platforms tested: linux Misc. update:
* [svn-r9569] Purpose:Quincey Koziol2004-11-241-7/+42
| | | | | | | | | | | | Update flags Description: Update gcc compiler flags to support the early gcc 4.0 snapshots available on sleipnir Platforms tested: FreeBSD 4.10 (sleipnir) w/gcc 4.0 snapshot Too minor to require h5committest
* [svn-r9567] Purpose:Quincey Koziol2004-11-241-14/+14
| | | | | | | | | | | Cleanup & add test Description: Clean up test makefile a bit and add metadata cache test to 1.6 branch. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r9565] Purpose:Albert Cheng2004-11-231-7/+7
| | | | | | | | | | | | | | Improvement. Description: Change the default CC, F9X and CXX compilers from ecc/efc/ecc to icc/ifort/icc because Intel keeps changing their compiler names. This eliminated the warning messages that a wrong compiler name is used. Platforms tested: Tested in Tg-login NCSA only since that is the only IA64 platform on site.
* [svn-r9563] Purpose:Quincey Koziol2004-11-233-39/+134
| | | | | | | | | | | | | Code optimization Description: Change how default allocation time is handled internally to the library, to avoid some performance issues with property lists. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9562] Purpose:Pedro Vicente Nunes2004-11-236-33/+42
| | | | | | | | | | | | | | | | bug fix Description: the Makefile.in of the hl tests was not including a "srcdir" include path the test table .c file was missing also the srcdir path Solution: add it Platforms tested: Misc. update:
* [svn-r9561] Purpose:Pedro Vicente Nunes2004-11-221-1/+0
| | | | | | | | | | | | | | | | bug fix Description: the Makefile.in had an instruction on the make install part that was not suposed to be there Solution: removed it Platforms tested: linux aix Misc. update:
* [svn-r9559] Purpose:Quincey Koziol2004-11-224-26/+34
| | | | | | | | | | | | | Code optimization Description: Switch a few more malloc/free pairs over to using internal free list code, to avoid abusing system memory allocator as badly. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9558] Purpose:Pedro Vicente Nunes2004-11-2222-4206/+17040
| | | | | | | | | | | | | | | | | | | | | | | | | | insert high level library into main library Description: configure.in has a new entry (--enable-hl, disable-hl) it is on by default the configure message prints info regarding if hl is enabled or not the tree is /hl /hl/src /hl/test Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r9556] Purpose:Quincey Koziol2004-11-2221-145/+272
| | | | | | | | | | | | | | | | | | | | | Code cleanup & optimization Description: Improve ADF/CGNS benchmark by reducing the number of internal attribute copies made during creations, opens and writes. Added new H5O_iterate() routine for iterating through messages of a certain type in the object header (attributes are the only message currently that can have multiple instances in the object header). Cross-pollinated various minor code cleanups to reduce diffs between branches. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9555] Purpose: Fixing minor bugBinh-Minh Ribler2004-11-211-1/+1
| | | | | | | | | | | | | | | Description: Xuan reported that "uint" used in this example caused error when built with MS Visual Studio compiler. Solution: Changed to "int." Platforms tested: Very minor, so I only tested on eirene. I'll let Xuan know to check on Windows. Misc. update:
* [svn-r9552] Purpose:Quincey Koziol2004-11-193-38/+76
| | | | | | | | | | | | | | | | | Code optimization Description: Avoid making as many copies of attribute information. Also, be smarter about which properties we've seen before when copying and closing property lists. Fix memory leak of attribute data structures. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9550] Purpose:Quincey Koziol2004-11-182-5/+13
| | | | | | | | | | | | | Code optimization Description: Rework & move around some of the macros for querying balanced properties of nodes to speed up tree balancing code. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9549] updated with new file entry.Albert Cheng2004-11-181-0/+1
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* [svn-r9547] Updated.Albert Cheng2004-11-181-0/+2
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* [svn-r9543] Purpose:Albert Cheng2004-11-181-0/+65
| | | | | | | | | | | | | | | | | | | | Bug fix (#264) Description: h5dump did not print attribute data in ASCII format when -r is used. Solution: Added the ability to print in ASCII for Attributes Data also. Added a test for printing Attributes with -r option. tall-2B.ddl is the standard output for printing attributes with -r option. Platforms tested: H5committested. Also in heping. Misc. update: Update MANIFEST.
* [svn-r9542] Purpose:Albert Cheng2004-11-182-0/+35
| | | | | | | | | | | | | | | | | | | Bug fix (#264) Description: h5dump did not print attribute data in ASCII format when -r is used. Solution: Added the ability to print in ASCII for Attributes Data also. Added a test for printing Attributes with -r option. Platforms tested: H5committested. Also in heping. Misc. update: Update MANIFEST.
* [svn-r9540] Purpose:Quincey Koziol2004-11-182-7/+17
| | | | | | | | | | | | | | Code optimization Description: Change threaded, balanced binary tree insertion routine to use more efficient "fast" search routine when trees with "fast compare" routines have objects inserted into them. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9539] Raymond Lu2004-11-182-19/+31
| | | | | | | | | | | | | | | | | | Purpose: Correction to previous bug fix. This checkin is mainly to let user test his program. Description: For family driver bug(#213), the previous fix was imperfect. The problem was when user create family file, the member size information wasn't saved in file. When the file was re-opened, the library simply use the size of 1st member file as member size. Solution: When file is re-opened, member size passed in from access property is checked to see if it's reasonable. If there is only 1 member file, member size can't be smaller than current member size. If there are at least 2 member files, member size can only be equal to the 1st member size. Platforms tested: h5committest and fuss
* [svn-r9537] Purpose:Quincey Koziol2004-11-176-87/+177
| | | | | | | | | | | | | | | | | | | | | | | Code cleanup & optimizations Description: Clean up some of the code in attributes to avoid allocating memory and performing type conversions when the conversion is a noop. Avoid memory allocations of attribute data structures by switching to use library's free list memory allocator routines. Avoid memory allocations of object header continuation data structures by switching to use library's free list memory allocator routines. Rearrange threaded, balanced binary tree macros slightly to avoid some overhead. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9535] Purpose:Quincey Koziol2004-11-171-1/+0
| | | | | | | Correct typo in comment. Platforms tested: Not tested - too minor
* [svn-r9534] Purpose:Quincey Koziol2004-11-171-2/+2
| | | | Update some missing dates for prior work.
* [svn-r9533] Purpose:Pedro Vicente Nunes2004-11-162-35/+1952
| | | | | | | | | | | | | | | | | | | | | | | enhanced performance for h5diff Description: the comparison cycle for the 2 buffers read from file was using a compare function where the type must be checked for each datum (e.g due to recursive calls in compound types) for atomic types this checking can be avoided Solution: introduced cycles for each one of the atomic integer and float class types Platforms tested: linux aix solaris Misc. update:
* [svn-r9531] Purpose: Bug fix(#213)Raymond Lu2004-11-164-16/+50
| | | | | | | | | | | | | Description: H5Pset_fapl_family sets family member size only for creating new file. The file doesn't keep this size information. When the file is re-opened, the size of first member file is used as the member size. Solution: Assume user knows the original member size and sets it through H5Pset_fapl_family. That will be the member size. User can pass in value 0 as member size if he doesn't know the original member size. Library will choose the size of current first member size as the member file size. Platforms tested: h5committest and fuss.
* [svn-r9530] Purpose:MuQun Yang2004-11-151-1/+1
| | | | | | | | | | | | | | | Modifying testing code for derived datatype. However, this test won't be run in the HDF5 parallel test. The code is checked in only for debugging purpose. Description: Solution: Platforms tested: Linux 2.4(mpich 1.2.6) Misc. update:
* [svn-r9529] Purpose:MuQun Yang2004-11-153-33/+99
| | | | | | | | | | | | | | | | | | | Check in some new fixes for MPI derived datatype routines Description: MPI derived datatype algorithm seems working for a simple case; however, there are still other problems need to be solved. So the code cannot be used for the time being. Check-in only for debugging. It won't affect other part of the library. Solution: Platforms tested: Linux 2.4 (heping, serial and parallel) (Since no new tests were added and changes are mostly restricted to one fuction, no need to test three platforms). Misc. update:
* [svn-r9527] Snapshot version 1.7 release 42HDF Admin2004-11-146-15/+15
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* [svn-r9526] Purpose:Quincey Koziol2004-11-123-6/+4
| | | | | | | | | | | | | | Bug fix, sorta. Description: Revert change to H5Pget_data_transform() which changed len of buffer returned to be inconsistent with H5Iget_name(), etc. We should discuss this change and apply it to all the similar functions if we decide to change the return value. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r9525] Purpose:Albert Cheng2004-11-121-0/+1
| | | | | | | updated for added dtransform example. Platforms tested: bin/chkmanifest.
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