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* Add support for "make check-vol", along with a few minor cleanups, etc.Quincey Koziol2018-11-2911-20/+45
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* Refactor infrastructure for setting FAPL information from environmentQuincey Koziol2018-11-2816-244/+236
| | | | | | variables during testing, including connecting native, pass-through, and dynamically loaded VOL connectors. Also bring native and pass-through VOL connectors into alignment, removing the "H5VLnative_private.h" header.
* Remove example VOL connector, since it's been superceded by the pass-throughQuincey Koziol2018-11-284-505/+2
| | | | VOL connector in the src subdirectory.
* Add pass-through VOL connectorQuincey Koziol2018-11-286-4/+3116
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* Update API tracing info for VOL functions and regenerate trace macros for VOLQuincey Koziol2018-11-284-19/+75
| | | | API calls.
* Added 'notify' callback for async requests; switched VOL class and infoQuincey Koziol2018-11-2810-82/+257
| | | | | | comparison to return comparison value as parameter, so they can return error values; "cancelled" -> "canceled"; switched order of 'wrap_object' and 'free_wrap_ctx' management callbacks.
* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-287-30/+34
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| * Merge pull request #1345 in HDFFV/hdf5 from ↵Dana Robinson2018-11-271-2/+2
| |\ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:openmpi_tweaks to develop * commit '6fccabed2e8b522747ee8056a196273917af78c7': Missed some function renames in error text.
| | * Missed some function renames in error text.Dana Robinson2018-11-271-2/+2
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| * | Merge pull request #1344 in HDFFV/hdf5 from ↵Ray Lu2018-11-273-4/+4
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10607-patches-for-warnings-in-the-core to develop * commit '14de476c8cb1b797ad43bea3c71dfb32bcd2131c': HDFFV-10607 Fixing two compiler warnings in the library.
| | * | HDFFV-10607 Fixing two compiler warnings in the library.Songyu Lu2018-11-273-4/+4
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| * | | Merge pull request #1343 in HDFFV/hdf5 from ↵Dana Robinson2018-11-273-13/+27
| |\ \ \ | | | |/ | | |/| | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:openmpi_tweaks to develop * commit '8cf3bfb14bd2a80f13d269a9e84cd99f86f19254': Yanked all MPI-1 calls Updated H5S to use the MPI-2 function MPI_Type_get_exten() where available. OpenMPI 4.0 removed the deprecated MPI-1 MPI_type_extent() call by default, so this avoids needing a special OpenMPI build.
| | * | Yanked all MPI-1 callsDana Robinson2018-11-273-27/+19
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| | * | Merge branch 'develop' into openmpi_tweaksDana Robinson2018-11-270-0/+0
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| * | | Merge pull request #1341 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to ↵Dana Robinson2018-11-271-11/+1
| |\ \ \ | | |_|/ | |/| | | | | | | | | | | | | | | | | | develop * commit 'd517bdf9d36f423e7abad34e109b6ce694fd03c8': Pulled the RELEASE.txt note concerning HDFFV-10633 since that change was pushed to hdf5_1_10 in case we release the Windows VFD in 1.10.5.
| | | * Updated H5S to use the MPI-2 function MPI_Type_get_exten()Dana Robinson2018-11-271-2/+24
| | |/ | | | | | | | | | | | | | | | where available. OpenMPI 4.0 removed the deprecated MPI-1 MPI_type_extent() call by default, so this avoids needing a special OpenMPI build.
| | * Pulled the RELEASE.txt note concerning HDFFV-10633 since thatDana Robinson2018-11-241-11/+1
| |/ | | | | | | | | change was pushed to hdf5_1_10 in case we release the Windows VFD in 1.10.5.
* | Add using FAPL from h5_fileaccess() to more tests.Quincey Koziol2018-11-224-39/+194
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* | Remove unused test for unimplemented routine.Quincey Koziol2018-11-222-151/+0
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* | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-2210-93/+209
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| * Merge pull request #1334 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2018-11-219-59/+170
| |\ | | | | | | | | | | | | | | | | | | | | | * commit '7bf6e98bd921c4ef1899144ab8a1f0d66a141141': Move wait_H5init.cmake up to config/cmake. Changes to CMake code to pause cmake/ctest, waiting for batch jobs to run and finish. Really don't run parallel tests without option specifying script. Add script and changes to wait for H5Tinit.c Add more sample batch scripts, specifically for sbatch, not for knl cross compile. Don't run parallel tests when no parallel test script is configured in HDF5options.cmake.
| | * Move wait_H5init.cmake up to config/cmake.Larry Knox2018-11-203-2/+2
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| | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Larry Knox2018-11-2023-386/+980
| | |\ | | |/ | |/| | | | develop
| * | Merge pull request #1338 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2018-11-202-34/+39
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '3dc4055aaf2c0917569cba38d47df051cc0eeb79': Fix typo Standardize script add max count to options file Check PARALLEL_LEVEL maximum
| | * | Fix typoAllen Byrne2018-11-191-1/+1
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| | * | Standardize scriptAllen Byrne2018-11-191-11/+7
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| | * | add max count to options fileAllen Byrne2018-11-191-22/+26
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| | * | Check PARALLEL_LEVEL maximumAllen Byrne2018-11-191-1/+6
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| | | * Changes to CMake code to pause cmake/ctest, waiting for batch jobs toLarry Knox2018-11-203-27/+27
| | | | | | | | | | | | | | | | run and finish.
| | | * Merge branch 'develop' of ↵Larry Knox2018-11-141-10/+24
| | | |\ | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| | | * | Really don't run parallel tests without option specifying script.Larry Knox2018-11-141-16/+15
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| | | * | Add script and changes to wait for H5Tinit.cLarry Knox2018-11-149-304/+416
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add more sample batch scripts, specifically for sbatch, not for knl cross compile. Don't run parallel tests when no parallel test script is configured in HDF5options.cmake.
* | | | | Switch loc_params to VOL callbacks to pass struct by pointer instead of byQuincey Koziol2018-11-2222-451/+450
| | | | | | | | | | | | | | | | | | | | value.
* | | | | Add info_to_str and str_to_info "management" callbacks for serializing andQuincey Koziol2018-11-2112-53/+295
| | | | | | | | | | | | | | | | | | | | deserializing a connector's info object.
* | | | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-202-1/+10
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| * | | | Merge pull request #1335 in HDFFV/hdf5 from ↵Ray Lu2018-11-192-1/+10
| |\ \ \ \ | | |/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10571-cve-2018-17237-divided-by-zero to develop * commit 'c923cdad6e515c842f3795a5b6d754ad94021e09': HDFFV-10571: Minor format changes. HDFFV-10571: Minor change - reformatting the error check. HDFFV-10571: Minor change - adding the error check right after decoding of chunk dimension for safeguard. HDFFV-10571: Minor change - revised the comment to be clearer. HDFFV-10571 Divided by Zero vulnerability. Minor fix: I added an error check to make sure the chunk size is not zero.
| | * | | HDFFV-10571: Minor format changes.Songyu Lu2018-11-152-2/+1
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| | * | | HDFFV-10571: Minor change - reformatting the error check.Songyu Lu2018-11-151-1/+2
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| | * | | HDFFV-10571: Minor change - adding the error check right after decoding of ↵Songyu Lu2018-11-152-5/+10
| | | | | | | | | | | | | | | | | | | | chunk dimension for safeguard.
| | * | | HDFFV-10571: Minor change - revised the comment to be clearer.Songyu Lu2018-11-141-1/+1
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| | * | | HDFFV-10571 Divided by Zero vulnerability. Minor fix: I added an error ↵Songyu Lu2018-11-141-0/+4
| | | |/ | | |/| | | | | | | | | check to make sure the chunk size is not zero.
* | | | Revert some of the changes to support the original property list value ofQuincey Koziol2018-11-183-4/+13
| | | | | | | | | | | | | | | | metadata read attempts.
* | | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-1821-122/+716
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| * | | Merge pull request #1337 in HDFFV/hdf5 from ↵Ray Lu2018-11-182-77/+26
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10601-issues-with-chunk-cache-hash2 to develop * commit '4f5a52e595194562644517b7600f3b96d4008c17': HDFFV-10601: Adding the new hdf5/tools/test/perform/chunk_cache.c to MANIFEST. HDFFV-10601: Some compiler doesn't support clock_gettime(). So I changed to use gettimeofday (HDgettimeofday in the HDF5 library).
| | * | | HDFFV-10601: Adding the new hdf5/tools/test/perform/chunk_cache.c to MANIFEST.Songyu Lu2018-11-161-0/+1
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| | * | | HDFFV-10601: Some compiler doesn't support clock_gettime(). So I changed to ↵Songyu Lu2018-11-161-77/+25
| |/ / / | | | | | | | | | | | | use gettimeofday (HDgettimeofday in the HDF5 library).
| * | | Merge pull request #1316 in HDFFV/hdf5 from ↵Ray Lu2018-11-154-14/+479
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10601-issues-with-chunk-cache-hash to develop * commit 'cd13d24e5140578a880aebe4e2d8b899179d0870': HDFFV-10601: I added error checking to the HDF5 functions. HDFFV10601: Adding performance test to verify the improvement. HDFFV-10601: I changed to a better way to calculate the number of chunks in a dataset. HDFFV-10601 Issues with chunk cache hash value calcuation:
| | * | | HDFFV-10601: I added error checking to the HDF5 functions.Songyu Lu2018-11-141-65/+161
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| | * | | HDFFV10601: Adding performance test to verify the improvement.Songyu Lu2018-11-133-2/+373
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| | * | | HDFFV-10601: I changed to a better way to calculate the number of chunks in ↵Songyu Lu2018-11-081-5/+3
| | | | | | | | | | | | | | | | | | | | a dataset.
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