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* [svn-r6873] Elena Pourmal2003-05-141-0/+0
| | | | | | | | | | | | | | | Purpose: Maintenance for 1.6 release Description: Fortran DLLs do not work. Solution: Disable all DLL projects and build only static fortran library and tests for 1.6. release Platforms tested: This is a pure Windows change. Windows 2000 with MSVC++ and Intel compilers. Fortran debug SZIP test fails for both compilers. Misc. update:
* [svn-r6872] Purpose:Albert Cheng2003-05-141-1/+3
| | | | | | | | | | | | | | | | Improvement, IMO. Description: The parallel tests were run after all tools tests. For some parallel systems, that could be a long time. Since tools are better tested in serial mode and one would like to see the results of parallel tests sooner in parallel mode, I moved the parallel tests before the tools tests. Platforms tested: Only tested in Eirene, both serial and parallel modes. No need for three platforms test since this is just a simple Makefile change.
* [svn-r6871] Purpose:Bill Wendling2003-05-131-8/+4
| | | | | | | | | | | | | | | | Fix Description: The way I was checking for -lfoo flags wasn't rigorous enough. Solution: Use a "grep" instead of the "case" statement. Also check that the full "-lfoo" flag is matched instead of just part of it. Platforms tested: Linux (small fix) Misc. update:
* [svn-r6870] Purpose:Quincey Koziol2003-05-133-4/+311
| | | | | | | | | | | | New test Description: Added test to check for dangling objects being handled correctly by the library. Platforms tested: FreeBSD 4.8 (sleipnir) h5committested
* [svn-r6869] Purpose:Quincey Koziol2003-05-131-1/+23
| | | | | | | | | | | | | | | | | Bug fix. Description: When the same dataset is opened more than once and those references to the object are left dangling, the library would not correctly shut down the dataset API, potentially allowing the file to be truncated. Solution: "force" the dataset IDs to be released when the dataset API is being shut down by the library. Platforms tested: FreeBSD 4.8 (sleipnir) h5committested
* [svn-r6868] Purpose:Quincey Koziol2003-05-131-3/+7
| | | | | | | | | | | | | | | | | | | Bug fix. Description: If the buffer holding the list of interfaces that are attempting to be closed down becomes full, the library stops recording that an infinite loop has occurred when shutting down the interfaces. Solution: Always return the correct "pending" information. Also added ellipsis to the string of interfaces to try to make it more obvious that the buffer became full. Platforms tested: FreeBSD 4.8 (sleipnir) h5committested
* [svn-r6867] Purpose:Quincey Koziol2003-05-131-3/+3
| | | | Update platform information for release testing.
* [svn-r6866] Purpose:Quincey Koziol2003-05-131-3/+3
| | | | | | | | Clean up comments. Platforms tested: FreeBSD 4.8 (sleipnir) h5committested
* [svn-r6864] Purpose:Quincey Koziol2003-05-131-0/+1
| | | | | | | | | | | | Bug fix Description: Added missing line for file close degree setting for this VFD. Platforms tested: FreeBSD 4.8 (sleipnir) h5committested (Unfortunately, none of these tests actually exercised this driver... :-(
* [svn-r6863] Purpose:Quincey Koziol2003-05-131-2/+4
| | | | | | | | | | | | | | Bug fix Description: A few groups were left open after they were used. Solution: Closed them. :-) Platforms tested: FreeBSD 4.8 (sleipnir) h5committested
* [svn-r6862] Purpose:MuQun Yang2003-05-131-0/+0
| | | | | | | | | | | | | | | A little change for project modification Description: libtestD.dll for debug mode is changed to libtestDd.dll to separate from release version. Solution: Platforms tested: windows 2000 Misc. update:
* [svn-r6861] Purpose:Quincey Koziol2003-05-132-13/+51
| | | | | | | | | | | | | | | | Bug fix Description: Iterating over the attributes of an object without any attributes was returning FAIL instead of 0 as the RM states. Solution: Changed return value of H5Aiterate for objects without attributes to be 0 and added regression tests for this. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest not needed.
* [svn-r6860] Purpose:Quincey Koziol2003-05-131-8/+20
| | | | | | | | | | | | | Small code cleanup Description: Remove redundant sanity check. Added a note about a potential bug. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest not necessary.
* [svn-r6859] Purpose:Bill Wendling2003-05-131-1/+1
| | | | | | | | | | | | | | | Bug Fix Description: Porting preprocessor (-E) bug fix from h5cc to h5fc. Solution: See Description. Platforms tested: Eyeballed (small fix). Misc. update:
* [svn-r6858] Purpose:Bill Wendling2003-05-131-2/+14
| | | | | | | | | | | | | | | | | | Bug Fix Description: Some compilers aren't happy if you specify the same library multiple times when linking. This caused HDF5 Lite to crash during tests on Kelgia Solution: Modified the script so that the shared libraries are specified only once for the commandline. Platforms tested: Kelgia (small fix). Misc. update:
* [svn-r6857] Purpose: bug fixRaymond Lu2003-05-132-2/+173
| | | | | | | | | Description: when a datatype element size is bigger than I/O datatype conversion buffer(1MB), library reports failure. Solution: adjust conversion buffer to be at least equal to one element size Platforms tested: h5committest
* [svn-r6856] Purpose:Bill Wendling2003-05-131-1/+1
| | | | | | | | | | | | | | | | | | | Bug Fix Description: When doing a "configure" using the h5cc script as the compiler, it would fail to accept the "-E" flag as running the preprocessor. The problem was that it was trying to link the file afterwards. Of course, the file wouldn't be there, so it would fail. Solution: Changed it so that if the -E flag is used, then we don't try to link (this is how it's done in mpicc...I must have copied it wrongly). Platforms tested: Linux & Kelgia (small change not needing full testing) Misc. update:
* [svn-r6855] Purpose:Bill Wendling2003-05-131-0/+2
| | | | | | | | | | | | | | | | Bug Fix Description: The newly added H5TEST_DLL{VAR} macros weren't defined if it wasn't a Windows environment. Solution: "#define" them to "" and "extern" if not a WIN32 environment. Platforms tested: Linux (small change not needing full testing) Misc. update:
* [svn-r6854] Purpose:Albert Cheng2003-05-131-0/+3
| | | | | | | | | | | | | | | | | | | | Feature Description: Sometimes the total build process take a long time, especially in parallel systems. Need some idea if some times are taking way too long to process. Solution: Added timestamps marking the beginning and ending of tests in one directory. This gives a rough idea of how much time the tests use. Platforms tested: Tested only in Eirene since this is just a makefile thing and only involve a simple command like echo and date. Misc. update:
* [svn-r6853] Purpose:MuQun Yang2003-05-131-2/+10
| | | | | | | | | | | | | | | | | Add decriptions to use libtestD.dll. Description: libtestD.dll should be placed to a place that the user can find in order to test HDF5 DLL within HDF5 workspace. Solution: Explained in document. Platforms tested: No need Misc. update:
* [svn-r6852] Purpose:MuQun Yang2003-05-131-7/+7
| | | | | | | | | | | | | | Add windows specified macro H5_TESTDLL for test routines. Description: See the previous CVS message. Solution: Platforms tested: windows2000(will not affect other platforms) Misc. update:
* [svn-r6851] Purpose:MuQun Yang2003-05-131-0/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | To add macro HDF5TESTDLL for windows libtest library. Description: Many HDF5 tests will use h5test.c. So we create a libtest library to 1) make tests more organized and 2) make tests more consistent with other platforms 3) reduce compiling times 4) reduce dumplicated warnings possibily generated by h5test.c However, we didn't create the corresponding libtest DLL correctly, now, some warnings are generated because of this; so for this release, we follow exactly DLL-DLL rules, to create an internal libtest DLL for our test suites. The application who used HDF5DLL will not have extra burdens to add HDF5TESTDLL and this will reflect in the release.txt Solution: USE DLL import and export library by defining macro HDF5TESTDLL and HDF5TESTUSEDLL Platforms tested: Windows 2000(the macro will not affect on non-WIN32 platforms). Misc. update:
* [svn-r6850] Purpose:MuQun Yang2003-05-131-0/+0
| | | | | | | | | | | | | | | | | | | Windows project-rearrangements, shut off warnings Description: 1. H5Farray.c is no longer used, removed it from hdf5.dsp. 2. libtestD is supposed to be a windows DLL; however it is treated as static library in the past. change it back to DLL and add HDF5TESTDLL and HDF5USETESTDLL. Solution: 1. see above. 2. change h5api_adpt.h and h5test.h, add macro HDF5TESTDLL and HDF5TESTUSEDLL. These changes will not affect other platforms. Platforms tested: windows 2000 Misc. update:
* [svn-r6849] Purpose:Pedro Vicente Nunes2003-05-122-499/+477
| | | | | | | | | | | | | | | | | | | | changed algorythm Description: changed the array_diff function to increment the read buffer with a size selected by an appropriate native data type. previously it was assumed, e.g. int size = 4 bytes Solution: Platforms tested: Linux 2.4 (rockaway) SunOS 5.7 (arabica, 64bit mode) IRIX 6.5 (modi4) Misc. update:
* [svn-r6848] Purpose:Pedro Vicente Nunes2003-05-122-0/+0
| | | | | | | | | | | | | | code warrior update Description: update project file Solution: Platforms tested: code warrior Misc. update:
* [svn-r6847] Purpose:Pedro Vicente Nunes2003-05-121-8/+12
| | | | | | | | | | | | | | | code warrior update Description: changed the project file to include the new H5Dio.c and remove the old H5Farray.c files updated install instructions Solution: Platforms tested: code warrior Misc. update:
* [svn-r6846] Purpose:Albert Cheng2003-05-121-5/+5
| | | | | | | | | | | | | | | | | | Bug fix Description: The tests would just segmentation fault in Tflops because the compiled code were launched without using the $RUNSERIAL to launch them. This may fail in some batch systems like Tflops. Solution: Used $RUNSERIAL to launch the compiled code. Also fixed a typo of the script command line. Platforms tested: Only tested in Tflops since the modified code resided there. Misc. update:
* [svn-r6845] Bug fix.Albert Cheng2003-05-121-0/+1
| | | | | | | cached the result of configure test for system_scope_threads(no) since TFLOPS can't do testing in frontends. Tested in sasn100 (frontend of Janus).
* [svn-r6844] Purpose:Pedro Vicente Nunes2003-05-102-125/+185
| | | | | | | | | | | | | | | | | | | | | | bug fix Description: datasets with different storage datatypes where not read to memory to same size types Solution: obtain the memory type and size, for the TWO datasets , with the "fixtype" function "upgrade" the smaller size to the larger if they are different added H5DIFF_DEBUG flag for print information Platforms tested: Linux 2.4 (rockaway) SunOS 5.7 (arabica, 64bit mode) IRIX 6.5 (modi4) Misc. update:
* [svn-r6843] Purpose:Quincey Koziol2003-05-0921-54/+73
| | | | | | | | | | | | Code cleanup Description: Clean up warnings exposed by compiling on O2K. Also, revert some of Bill and my changes to the H5S_mpi_opt_types_g, etc. and settle them back into their original location. Platforms tested: h5committested.
* [svn-r6842] Purpose:Bill Wendling2003-05-086-9/+3
| | | | | | | | | | | | | | | | | | | Code Cleanup Description: Warning messages were being produced by the "make" program because the "docdir" was being specified twice as a target in the generated Makefiles. This is because the "EXAMPLESDIR" was also defined as "docdir". Solution: Made "EXAMPLESDIR" unique for C, Fortran, and C++ in the commence.in file and removed EXAMPLESDIR from the Makefile.ins Platforms tested: Dangermouse (only affects make system, not code). Misc. update:
* [svn-r6841] Purpose:Bill Wendling2003-05-081-0/+5
| | | | | | | | | | | | | | | | Bug Fix Description: A variable wasn't declared in this file. Solution: Put the extern declaration of the variable in this file. It's defined in the H5S.c module. Platforms tested: Modi4 (This affects only parallel platforms) Misc. update:
* [svn-r6839] Purpose: feature protectionRaymond Lu2003-05-083-0/+62
| | | | | | | | | Description: H5Sselect_hyperslab and H5Sselect_elements didn't check scalar dataspaces. Solution: put error detection in those functions. Platforms tested: eirene(simple change).
* [svn-r6838] Purpose:Pedro Vicente Nunes2003-05-081-0/+2
| | | | | | | | | | | | added 2 test files for h5diff that were accidently left over yesterday Description: Solution: Platforms tested: Misc. update:
* [svn-r6837] Purpose:Quincey Koziol2003-05-0824-277/+261
| | | | | | | | | | | | | | | Code cleanup. Description: Move many package or internal function prototypes and macro definitions into tighter scope according to their current use. Added more comments where appropriate. Eliminate ancient, unused functions. Added a couple "accessor" functions to get parts of data structures which were moved out of scope. Platforms tested: h5committested
* [svn-r6836] Purpose:Quincey Koziol2003-05-081-68/+72
| | | | | | | | | | Bug fix Description: Clean up small memory leak. Platforms tested: h5committested.
* [svn-r6835] Elena Pourmal2003-05-089-5382/+7315
| | | | | | | | | | | | | Purpose: Maintenance Description: I changed release version to 1.5.54. Email about tetsing of 1.5.53 will be send after this checkins. Solution: used bin/h5vers -s to change the version number Platforms tested: Done on arabica Misc. update:
* [svn-r6834] Purpose:Albert Cheng2003-05-081-3/+16
| | | | | | | | | | | | | | | | | Feature change Description: HDF5_PARAPREFIX has been default to various values like /tmp, /var/tmp, ... None of these solve all problems and all of them created new problems. For LLNL GPFS, '.' is more appropriate since they can do the build right inside gpfs. Same for NCSA Copper. The special setting for Janus is still retained since that is a one of a kind machine and the uses could use all the help. Platforms tested: h5committested (using sol instead of arabica) plus eirene(pp). Misc. update:
* [svn-r6833] Purpose:Albert Cheng2003-05-081-0/+10
| | | | | | | | | | | | Improvement Description: Added an explanation of using $HDF5_PARAPREFIX for Parallel tests. Platforms tested: h5committested (using sol instead of arabica) plus eirene(pp). Misc. update:
* [svn-r6832] Purpose:Quincey Koziol2003-05-083-16/+73
| | | | | | | | | | | Code cleanup Description: Improve file format debugging output. Platforms tested: FreeBSD 4.8 (sleipnir) Triple check not needed
* [svn-r6831] Purpose:Quincey Koziol2003-05-081-2/+2
| | | | | | | | | | | | | | | Bug fix Description: New external file double-vectorized I/O routines were checking an assertion on the wrong variable (essentially a typo :-). Solution: Check correct variable. Platforms tested: FreeBSD 4.8 (sleipnir) Triple check not needed.
* [svn-r6830] Purpose:Quincey Koziol2003-05-081-1/+1
| | | | | | | | | | | | | | | | Bug fix Description: Dataspace selections created for individual chunks during chunk dataset I/O were leaking memory. Solution: Properly set reference count on selection, so they get free'd when the dataspace is closed. Platforms tested: FreeBSD 4.8 (sleipnir) Triple check not needed.
* [svn-r6829] Purpose:Quincey Koziol2003-05-082-9/+1
| | | | | | | | | | | Code cleanup. Description: Cleaned up an unusued variable and some commented out code. Platforms tested: FreeBSD 4.8 (sleipnir) Triple check not needed.
* [svn-r6828] Purpose: bug fixRaymond Lu2003-05-0717-18/+18
| | | | | | | | | Description: H5T_XXX_init_interface calls H5T_init_interface causing datatype not closed after file is closed. Solution: changed H5T_init_interface to H5T_init Platforms tested: h5committest
* [svn-r6827] Purpose:Pedro Vicente Nunes2003-05-0771-100/+250
| | | | | | | | | | | | | | | | | | | | | | | | added new test files for h5diff bug fix Description: the criteria for determining the correct switch case cast to void* to type* was the data size read from disk. this was causing problems on Cray T3E, where all integer except char are 8 bytes long Solution: changed the criteria for using the memory size instead, which is determined by the same function that reads the data into memory the messages " using memory NATIVE_TYPE_X" were removed, because they might not coincid on different platforms. Platforms tested: Linux 2.4 (rockaway) SunOS 5.7 (arabica) IRIX 6.5 (modi4) Misc. update:
* [svn-r6826] Purpose:Pedro Vicente Nunes2003-05-071-0/+7
| | | | | | | | | | | | added new test files for h5diff Description: Solution: Platforms tested: Misc. update:
* [svn-r6825] Purpose:Quincey Koziol2003-05-0743-7222/+7687
| | | | | | | | | | | | | | | | | | | | | | | | | New feature/enhancement Description: Chunked datasets are handled poorly in several circumstances involving certain selections and chunks that are too large for the chunk cache and/or chunks with filters, causing the chunk to be read from disk multiple times. Solution: Rearrange raw data I/O infrastructure to handle chunked datasets in a much more friendly way by creating a selection in memory and on disk for each chunk in a chunked dataset and performing all of the I/O on that chunk at one time. There are still some scalability (the current code attempts to create a selection for all the chunks in the dataset, instead of just the chunks that are accessed, requiring portions of the istore.c and fillval.c tests to be commented out) and performance issues, but checking this in will allow the changes to be tested by a much wider audience while I address the remaining issues. Platforms tested: h5committested, FreeBSD 4.8 (sleipnir) serial & parallel, Linux 2.4 (eirene)
* [svn-r6823] Purpose:Bill Wendling2003-05-074-5/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Code Improvements/Bug Fixes Description: Comparison of equality of a double/float variable to 0.0 is not guaranteed to work and is bad practice. In H5Fcontig.c, a warning was given by a statement like: x = (++x) % y; This could be confusing to a compiler I suppose. In H5RS.c, a typedef of a structure was being tagged by the compiler as "useless" because it had the form: typedef struct foo { int var1; /* ... */ }; /* <--- note no name for this typedef */ The statement "typedef struct foo foo" is already in the header file. Solution: Test that the absolute value of the variable is < a very small positive number. Changed "x = (++x) % y" to "++x; x %= y;" instead. Removed the "typedef" from the structure in the H5RS.c file. Platforms tested: Modi4 (Parallel & Fortran) Verbena (C++ & Fortran) Arabica (Fortran) Misc. update:
* [svn-r6822] Purpose:Bill Wendling2003-05-072-5/+6
| | | | | | | | | | | | | | | | | | | Code Improvements/Bug Fixes Description: Comparison of equality of a double/float variable to 0.0 is not guaranteed to work and is bad practice. Solution: Test that the absolute value of the variable is < a very small positive number. Platforms tested: Modi4 (Parallel & Fortran) Verbena (C++ & Fortran) Arabica (Fortran) Misc. update:
* [svn-r6821] Elena Pourmal2003-05-061-4/+4
| | | | | | | | | | | | | | | Purpose: Cray T3E maintenance with Raymond's help Description: fillval test failed for compact dataset since the size of the dataset was bigger than 64K. Solution: Reduced the dataspace of the compact dataset to 1024 elements. Platforms tested: T3E; it was also tested with semi-manual h5committest. (I had to built and test manually on modi4 parallel because of some weird failure of h5committest on modi4) Misc. update:
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