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* Added deprecated symbol wrappers for the H5DOwrite/read_chunkDana Robinson2018-05-043-1/+25
| | | | wrappers.
* Updated commenting in the H5DO compat test.Dana Robinson2018-05-041-11/+9
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* Stripped out most of the duplicated functionality in the H5DODana Robinson2018-05-041-2046/+147
| | | | compat test.
* * Added H5DO compatibility functions.Dana Robinson2018-05-048-77/+2292
| | | | | * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
* * Fixed the error testsDana Robinson2018-05-025-92/+139
| | | | * Moved common functionality into helper functions
* Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-04-30103-2676/+2521
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| * Merge pull request #1041 in HDFFV/hdf5 from merge_hyperslab_updates to developQuincey Koziol2018-04-3029-2075/+2039
| |\ | | | | | | | | | | | | | | | * commit '4411bc27ac8842795c73d7a469273a8d831bb835': Further minor cleanups Checkpoint normalization against incoming hyperslab / selection / dataspace improvements.
| | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-292-3/+7
| | |\ | | |/ | |/| | | | merge_hyperslab_updates
| * | Merge pull request #1040 in HDFFV/hdf5 from ↵Quincey Koziol2018-04-292-3/+7
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~KOZIOL/hdf5:fix_make_check_repeat to develop * commit '83e2ea681dd73e65c9b153385279b528cfdfe9df': Fix errors in Makefile.am files that cause "make check" to repeat test, even when there are no changes to source files. (Also add a ggenerated script to the list of files cleaned up on 'make distclean')
| | * | Fix errors in Makefile.am files that cause "make check" to repeat test, evenQuincey Koziol2018-04-292-3/+7
| |/ / | | | | | | | | | | | | when there are no changes to source files. (Also add a ggenerated script to the list of files cleaned up on 'make distclean')
| | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-291874-80664/+155030
| | |\ | | |/ | |/| | | | merge_hyperslab_updates
| * | Merge pull request #1038 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-04-2472-609/+486
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f435ed67fa53ca35462a60f4025464465d7dc9d0': TRILABS-20 set a compiler name on all project commands TRILABS-19 All c code INCLUDE_DIRECTORIES converted TRILABS-19 Initial conversion of include_directories to targets
| | * \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-231-11/+2
| | |\ \ | | |/ / | |/| | | | | | | | | | * commit 'fa829e322ed44a67e2b3f2d6adf1306ad794859b': Fix non-threadsafe API context head pointer handling.
| | * | TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-2068-108/+127
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| | * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-183-53/+26
| | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'e217bd113db96b96b485de82395688ca2313918a': Resolve memory leak of last API context, by freeing it in H5CX terminate routine. Revert "Close memory leak of last API context when shutting library down."
| | * | | TRILABS-19 All c code INCLUDE_DIRECTORIES convertedAllen Byrne2018-04-183-16/+19
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| | * | | TRILABS-19 Initial conversion of include_directories to targetsAllen Byrne2018-04-1762-489/+344
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| | | | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2017-04-1135-828/+2897
| | | | |\ | | | | | | | | | | | | | | | | | | merge_hyperslab_updates
| | | | * | Further minor cleanupsQuincey Koziol2017-03-283-39/+35
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| | | | * | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2017-03-28105-970/+4151
| | | | |\ \ | | | | | | | | | | | | | | | | | | | | | merge_hyperslab_updates
| | | | * | | Checkpoint normalization against incoming hyperslab / selection / dataspaceQuincey Koziol2017-03-2830-2040/+2008
| | | | | | | | | | | | | | | | | | | | | | | | | | | | improvements.
* | | | | | | Normalize with trunk prior to update mergeDana Robinson2018-04-301-16/+16
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* | | | | | | Fixed a warning.Dana Robinson2018-04-301-1/+1
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* | | | | | | Finished move of H5DOread/write_chunk calls to H5D.Dana Robinson2018-04-305-600/+142
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* | | | | | | First stage of moving H5DOread/write_chunk() to src/ and makingDana Robinson2018-04-3012-306/+291
|/ / / / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
* | | | | | Merge pull request #1035 in HDFFV/hdf5 from fix_api_context_filter_plugin to ↵Quincey Koziol2018-04-191-11/+2
|\ \ \ \ \ \ | |_|/ / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '76cab1f5cb48af8398e1c09c15a974b1f8347da4': Fix non-threadsafe API context head pointer handling.
| * | | | | Fix non-threadsafe API context head pointer handling.Quincey Koziol2018-04-191-11/+2
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* | | | | Merge pull request #1034 in HDFFV/hdf5 from fix_api_context_fix to developQuincey Koziol2018-04-183-53/+26
|\ \ \ \ \ | |/ / / / |/| | | | | | | | | | | | | | | | | | | * commit 'bcab84db9f291920ed0fe321116405f73eaddfa5': Resolve memory leak of last API context, by freeing it in H5CX terminate routine. Revert "Close memory leak of last API context when shutting library down."
| * | | | Resolve memory leak of last API context, by freeing it in H5CX terminateQuincey Koziol2018-04-183-35/+11
| | | | | | | | | | | | | | | | | | | | routine.
| * | | | Revert "Close memory leak of last API context when shutting library down."Quincey Koziol2018-04-182-21/+18
|/ / / / | | | | | | | | | | | | This reverts commit 0bd3634dc5747d88582a966050896bad57acb892.
* | | | Merge pull request #1033 in HDFFV/hdf5 from fix_h5cx_pop_special_leak to developQuincey Koziol2018-04-172-18/+21
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit '0bd3634dc5747d88582a966050896bad57acb892': Close memory leak of last API context when shutting library down.
| * | | | Close memory leak of last API context when shutting library down.Quincey Koziol2018-04-172-18/+21
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* | | | Merge pull request #1030 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-04-121-0/+1
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit '9a8e1e1a7cad7674de2b183ba530affc0f13c615': Add missing file
| * | | | Add missing fileAllen Byrne2018-04-121-0/+1
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* | | | Merge pull request #1024 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-04-1131-380/+1132
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '34e3e3ef17f29b721780941866a3ad4c261b7c05': Whitespace changes Whitespace and test reclassify Move two more functions from unit tests Reorder of tests for debug APIs option HDFFV-10444 fix soversion numbers for libraries Fix Java test for DEBUG_APIS Use var instead of absolute number
| * | | | Whitespace changesAllen Byrne2018-04-101-4/+2
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| * | | | Whitespace and test reclassifyAllen Byrne2018-04-108-68/+42
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| * | | | Move two more functions from unit testsAllen Byrne2018-04-104-61/+59
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| * | | | Reorder of tests for debug APIs optionAllen Byrne2018-04-102-18/+16
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| * | | | HDFFV-10444 fix soversion numbers for librariesAllen Byrne2018-04-1017-54/+65
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| * | | | Fix Java test for DEBUG_APISAllen Byrne2018-04-099-307/+1080
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| * | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-097-21/+18
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '3211e907f4f9349ba7510d70cfbcc6ee36d99c58': Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more standard H5CX_DEBUG form. Minor warning cleanup while working on VOL issues.
| * \ \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-06331-20748/+23400
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '048ae59d2970dd21810577c999f756c028b6faaf': Correct errors with non-"instrumented library" builds (production & parallel, generally speaking). Update java error stack tests Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for the file's free space manager (and add a comment about them). Add comment for the file flush when the file low / high bounds are changed after a file is open. Expanded comments abuot H5CX_t fields. Add an assert to verify that we don't write when between MPI_Barrier() calls during a flush. Add comments for internal structs. Remove redundant 'is_collective' parameter from H5CX_set_loc. Correct typo in comment. Revert some tangential code cleanups. Add API context source files to CMake configuration file. Corrections for parallel I/O & tests. Update handling of reporting for breaking collective I/O when the default DXPL is used. Update encoded DXPLs to reflect changes in properties. Correct typo for error checking malloc return value. Refactor H5CX code to reduce duplication. Cleanup API context function usage. Add API context interface and use it throughout the library.
| * | | | | | Use var instead of absolute numberAllen Byrne2018-04-051-2/+2
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* | | | | | | Merge pull request #1023 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2018-04-101-2/+2
|\ \ \ \ \ \ \ | |_|_|/ / / / |/| | | | | | | | | | | | | | | | | | | | * commit '05ef85b02dc88ebd738d1332476ae1765a25b191': fixed return integer type of C function
| * | | | | | fixed return integer type of C functionM. Scot Breitenfeld2018-04-101-2/+2
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* | | | | | Merge pull request #1019 in HDFFV/hdf5 from ~KOZIOL/hdf5:update_api_context ↵Quincey Koziol2018-04-062-3/+3
|\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '62b4200f580e9ea0b95cbc218bfae50ae38ef25d': Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more standard H5CX_DEBUG form.
| * | | | | | Remove vestiges of H5_DEBUG_BUILD macro, switching it to the moreQuincey Koziol2018-04-062-3/+3
|/ / / / / / | | | | | | | | | | | | | | | | | | standard H5CX_DEBUG form.
* | | | | | Merge pull request #1018 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to ↵Dana Robinson2018-04-065-18/+15
|\ \ \ \ \ \ | |_|/ / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '02039e0a91cf1baae46d52a77c521fc6357b7c90': Minor warning cleanup while working on VOL issues.
| * | | | | Minor warning cleanup while working on VOL issues.Dana Robinson2018-04-065-18/+15
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