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* Fix some collective metadata read issuesJordan Henderson2019-02-1211-87/+381
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* Merge pull request #1500 in HDFFV/hdf5 from ↵Dana Robinson2019-01-251-9/+9
|\ | | | | | | | | | | | | ~DEROBINS/hdf5_der:valgrind_fixes to develop * commit '3fac85c00d6253f7b2c96ca46c7b9718d0203029': Fixed a bug identified by valgrind in the cork test.
| * Fixed a bug identified by valgrind in the cork test.Dana Robinson2019-01-251-9/+9
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* Merge pull request #1498 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-252-0/+1
|\ | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop * commit '0247f7b78d056b04fa08f74a2d4c4eea37f48d22': Added data file for test and updated MANIFEST
| * Merge branch 'develop' of ↵Binh-Minh Ribler2019-01-2512-83/+110
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| * | Added data file for test and updated MANIFESTBinh-Minh Ribler2019-01-252-0/+1
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* | | Merge pull request #1496 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-255-15/+16
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | * commit '73fcbbee97c6385fb2b5009e5858ae1d6c28b3c3': CMake fix Java html fix and cmake update Update CMake
| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-01-255-24/+129
| |\ \ | |/ / |/| | | | | | | | | | | | | | * commit '2fe69e7639198b174da393e47a029d0ac35b31c8': Added test for HDFFV-10588 Fixed HDFFV-10684 Fixed HDFFV-10586 and HDFFV-10588 Description: HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix is not perfect, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
* | | Merge pull request #1479 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-245-24/+129
|\ \ \ | | |/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop HDFFV-10586 and HDFFV-10588 * commit '25cd1ab02b9ddaf58a4f5422f4ab4fde411e050a': Added test for HDFFV-10588 Fixed HDFFV-10684 Fixed HDFFV-10586 and HDFFV-10588 Description: HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix is not perfect, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * | Added test for HDFFV-10588Binh-Minh Ribler2019-01-242-1/+102
| | | | | | | | | | | | | | | | | | | | | Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * | Fixed HDFFV-10684Binh-Minh Ribler2019-01-202-21/+19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: The test for HDFFV-10588 has revealed a bug in H5Ewalk. H5Ewalk did not stop midway even when the call back function returns H5_ITER_STOP. This is because a condition is missing from the for loops in H5E__walk causing the callback functions unable to stop until all the errors in the stack are iterated. Quincey advised on the final fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR to HERROR, and the for loops won't continue when "ret_value" is not 0. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * | Merge branch 'develop' of ↵Binh-Minh Ribler2019-01-1598-1488/+3402
| |\ \ | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| * | | Fixed HDFFV-10586 and HDFFV-10588Binh-Minh Ribler2019-01-152-2/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix is not perfect, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| | | * CMake fixAllen Byrne2019-01-241-1/+1
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| | | * Java html fix and cmake updateAllen Byrne2019-01-243-11/+8
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| | | * Update CMakeAllen Byrne2019-01-233-5/+9
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* | | Merge pull request #1491 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-223-6/+19
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f033214796c383a9018dd760e92257dc27d7b852': Add clear objects to ignore tests Add clear objects to ignore tests Add new clear tests to ignore list Cleanup variable names HDFFV-10685 Correct syntax HDFFV-10685 Corrected version HDFFV-10685 Always set Mac version flags - use soversion
| * | | Add clear objects to ignore testsAllen Byrne2019-01-221-1/+1
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| * | | Add clear objects to ignore testsAllen Byrne2019-01-221-1/+5
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| * | | Add new clear tests to ignore listAllen Byrne2019-01-221-0/+5
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| * | | Cleanup variable namesAllen Byrne2019-01-221-2/+2
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| * | | HDFFV-10685 Correct syntaxAllen Byrne2019-01-221-0/+1
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| * | | HDFFV-10685 Corrected versionAllen Byrne2019-01-221-1/+3
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| * | | HDFFV-10685 Always set Mac version flags - use soversionAllen Byrne2019-01-221-3/+4
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* | | Merge pull request #1489 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2019-01-214-339/+11
|\ \ \ | | | | | | | | | | | | | | | | * commit 'e6be5560882c2f598b3a0ddab7d9d29a552fcb10': MPI vars need passed in, change to grepTest
| * | | MPI vars need passed in, change to grepTestAllen Byrne2019-01-204-339/+11
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* | | Merge pull request #1485 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-198-55/+383
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '769837f3ae93f4cae3486aef95c1c580a9946406': Add parrallel runTest.cmake for ph5example Add missing depends to last test Fix CMake policy 54 warnings TRILABS-105 Fix CMake policy 54 warnings
| * | | Add parrallel runTest.cmake for ph5exampleAllen Byrne2019-01-183-4/+332
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-01-181-1/+1
| |\ \ \ | |/ / / |/| | | | | | | | | | | * commit 'eeea2b91729b57a0cdec301312bd5713941ab2c6': Fix typo
* | | | Merge pull request #1484 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to ↵Allen Byrne2019-01-181-1/+1
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '2cf543b2941442a45a4cb878d4fb33c8c69188a2': Fix typo
| * | | | Fix typoAllen Byrne2019-01-181-1/+1
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-01-180-0/+0
| |\ \ \ | |/ / / |/| | | | | | | | | | | * commit 'c5b19f3dd2eb4144e614105e30bf149b5324e014': Fix missing depends for last repart test
* | | | Merge pull request #1483 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to ↵Allen Byrne2019-01-181-9/+16
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '13d1568c3f491b1dfe6254f22f04fece29b6dad2': Fix missing depends for last repart test
| * | | | Fix missing depends for last repart testAllen Byrne2019-01-181-9/+16
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| * | | Add missing depends to last testAllen Byrne2019-01-181-9/+16
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| * | | Fix CMake policy 54 warningsAllen Byrne2019-01-184-29/+29
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| * | | TRILABS-105 Fix CMake policy 54 warningsAllen Byrne2019-01-181-22/+22
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* | | Merge pull request #1482 in HDFFV/hdf5 from ↵Dana Robinson2019-01-181-2/+2
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:valgrind_fixes to develop * commit 'a4e63bb98072868a145c45e8247280ebc86c3a6d': Fixed a memory issue flagged by valgrind in the direct_chunk test.
| * | | Fixed a memory issue flagged by valgrind in the direct_chunk test.Dana Robinson2019-01-171-2/+2
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* | | Merge pull request #1481 in HDFFV/hdf5 from reduce_cache_image_num_groups to ↵Quincey Koziol2019-01-161-2/+9
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | develop * commit '47fb7c2ee6541bb006e76c34966102ebbdaec587': Update usage for FAPLs, and reduce # of groups for smoke checks
| * | Update usage for FAPLs, and reduce # of groups for smoke checksQuincey Koziol2019-01-161-2/+9
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* | Merge pull request #1476 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-141-1/+1
|\ \ | | | | | | | | | | | | | | | * commit 'fe5650727c55e44e2605b667ac35f74993834643': Correct fix for new policy Fix for new policy
| * | Correct fix for new policyAllen Byrne2019-01-141-1/+1
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| * | Fix for new policyAllen Byrne2019-01-141-1/+1
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* | Merge pull request #1471 in HDFFV/hdf5 from fix_daily_test_on_platypus to ↵Quincey Koziol2019-01-121-13/+39
|\ \ | | | | | | | | | | | | | | | | | | develop * commit '3a31d37abb1fe390d4e28502e7de3ad6da092970': Work around compiler fussiness on platypus.
| * | Work around compiler fussiness on platypus.Quincey Koziol2019-01-111-13/+39
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* | Merge pull request #1468 in HDFFV/hdf5 from merge_hyperslab_updates_02 to ↵Quincey Koziol2019-01-117-213/+128
|\ \ | | | | | | | | | | | | | | | | | | develop * commit '4729d04d9123e8cd6b2bba071695ace7ddd2a7b5': Delta reduction against hyperslab_updates branch.
| * | Delta reduction against hyperslab_updates branch.Quincey Koziol2019-01-117-213/+128
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* | Merge pull request #1465 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to ↵Dana Robinson2019-01-111-4/+4
|\ \ | | | | | | | | | | | | | | | | | | develop * commit 'b82ced10619731125b9db7b1ac36f3844463df9a': Fix for Fortran failures.
| * \ Merge branch 'develop' of ↵Dana Robinson2019-01-112-0/+72
| |\ \ | |/ / |/| | | | | https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into develop
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