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* Update versioning to next major versionAllen Byrne2019-09-2529-1720/+1777
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* Merge pull request #1944 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developAllen Byrne2019-09-259-19/+19
|\ | | | | | | | | * commit 'b04e1ad058fd98fc0b303586dd5f6f19aa645ed0': Update develop branch version to 1.13.0 after creation of hdf5_1_12 branch.
| * Update develop branch version to 1.13.0 after creation of hdf5_1_12Larry Knox2019-09-259-19/+19
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* Merge pull request #1943 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2019-09-251-20/+25
|\ | | | | | | | | * commit '2a4bc8c63e842d5e7551e6e75a9ca95c0c2d2886': Merge Binh-Minh's changes for code improvement to chunk_info.c (PR #1942) to develop branch.
| * Merge Binh-Minh's changes for code improvement to chunk_info.c (PR #1942)Larry Knox2019-09-251-20/+25
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* Merge pull request #1756 in HDFFV/hdf5 from ↵Jake Smith2019-09-2430-604/+1444
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:bugfix/repack_external_storage to develop * commit '9a388325ebaec339f67ddd210ca31ddcc3ede973': Update to current external file population. Revert else-if to single line. Change print calls to HD-wrapped. Minor formatting tweaks (inc. regressions and in-file style-matching). Refactor h5repackgentest to have more modular internals, for easier addition of new tests. Update manifest and test script for new hdf5 external-storage .h5 files. Refactoring. Add copyright/disclaimer to repack gentest. Minor formatting tweaks. Minor formatting adjustments. Undo some formatting modifications. Update MANIFEST. Add forgotten files to include from h5repack testfiles for tests. Fix failing automated reporting. Add 8-bit big-endian testfile. First pass at repack consolidating external storage if layout given. Checks out manually, tests still complain. Formatting changes, mostly. Add initial failing test for h5repack copying external data into new file. Modify code comments for clarity. Some minor reformatting. Some minor reformatting. Replace tabs with spaces. Add test that uses the family member FAPL setting. refactor h5repack_main.c -- remove some redundancy, formatting Fit help message to 80 character width and clarify some details.
| * Merge branch 'develop' of ↵Jacob Smith2019-09-249-22/+44
| |\ | |/ |/| | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage
* | Merge pull request #1940 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-09-241-2/+2
|\ \ | | | | | | | | | | | | * commit '8a2a500fef227e4f813f0059b365869268354048': Fix missing option and incorrect close
| * | Fix missing option and incorrect closeAllen Byrne2019-09-241-2/+2
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* | Merge pull request #1939 in HDFFV/hdf5 from ↵Dana Robinson2019-09-247-20/+38
|\ \ | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '6eb506eff76b5455f8aac8889c6809aca2d8be52': Revert "Moved NDEBUG guards to H5EA_DEBUG in H5EA package." Revert "Fix for H5EA debug package when built in release mode."
| * | Revert "Moved NDEBUG guards to H5EA_DEBUG in H5EA package."Dana Robinson2019-09-247-18/+38
| | | | | | | | | | | | This reverts commit 431123503d387bce30b1f6db7dc4ad3a33bc51bb.
| * | Revert "Fix for H5EA debug package when built in release mode."Dana Robinson2019-09-241-2/+0
| | | | | | | | | | | | This reverts commit 911b1ca67fdf7c2f3a32dd42c591e4e9b2fa1950.
| | * Update to current external file population.Jacob Smith2019-09-241-13/+19
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| | * Revert else-if to single line.Jacob Smith2019-09-241-22/+12
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| | * Merge branch 'develop' of ↵Jacob Smith2019-09-23456-35207/+57451
| | |\ | |_|/ |/| | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage
* | | Merge pull request #1937 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2019-09-235-33/+33
|\ \ \ | |/ / |/| | | | | | | | | | | * commit 'cf9eff93e05c9e68d82ebb1fc1e02319e428af35': Remove obsolete symbol small syntax changes
| * | Remove obsolete symbolAllen Byrne2019-09-201-14/+13
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-09-196-59/+62
| |\ \ | |/ / |/| | | | | | | | * commit '93e8bbd9f47d6a2eace95f2ed3b2dd4b6336940a': Renamed get/set_time() calls in the tools library to avoid name clash when building static parallel HDF5 w/ static linking to OpenMPI.
* | | Merge pull request #1936 in HDFFV/hdf5 from ↵Dana Robinson2019-09-196-59/+62
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit 'a6930a2bcfd37ea3610baafb608faec883286315': Renamed get/set_time() calls in the tools library to avoid name clash when building static parallel HDF5 w/ static linking to OpenMPI.
| * | | Renamed get/set_time() calls in the tools library to avoid nameDana Robinson2019-09-196-59/+62
| | | | | | | | | | | | | | | | clash when building static parallel HDF5 w/ static linking to OpenMPI.
| | * | small syntax changesAllen Byrne2019-09-195-20/+21
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* | | Merge pull request #1926 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-09-1926-1154/+1203
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '8cddc96f73e8f90f67792405f5142b419e9061d7': Change unused variable to generic form Whitespace cleanup Add missing HD prefix HDFFV-10740 - skip copying dirs in for loops Correct HDF5 options to tristate values. HDFFV-10905 fix test scripts for no zlib HDFFV-10903 - fix VFD constants in JNI
| * | | Change unused variable to generic formAllen Byrne2019-09-191-1/+1
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-09-191-0/+2
| |\ \ \ | |/ / / |/| | | | | | | | | | | * commit '4d4a88a9f3775d1c6be820208a2699ae38d586b4': Fix for H5EA debug package when built in release mode.
* | | | Merge pull request #1932 in HDFFV/hdf5 from ↵Dana Robinson2019-09-181-0/+2
|\ \ \ \ | | |/ / | |/| | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '911b1ca67fdf7c2f3a32dd42c591e4e9b2fa1950': Fix for H5EA debug package when built in release mode.
| * | | Fix for H5EA debug package when built in release mode.Dana Robinson2019-09-181-0/+2
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| * | Whitespace cleanupAllen Byrne2019-09-1816-1111/+1112
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| * | Add missing HD prefixAllen Byrne2019-09-181-1/+1
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| * | HDFFV-10740 - skip copying dirs in for loopsAllen Byrne2019-09-184-26/+54
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-09-187-38/+18
| |\ \ | |/ / |/| | | | | | | | * commit '57f1a2124c65283fc48c4ca700392e1682d0e754': Moved NDEBUG guards to H5EA_DEBUG in H5EA package.
* | | Merge pull request #1930 in HDFFV/hdf5 from ↵Dana Robinson2019-09-187-38/+18
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '431123503d387bce30b1f6db7dc4ad3a33bc51bb': Moved NDEBUG guards to H5EA_DEBUG in H5EA package.
| * | | Moved NDEBUG guards to H5EA_DEBUG in H5EA package.Dana Robinson2019-09-177-38/+18
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| | * | Correct HDF5 options to tristate values.Allen Byrne2019-09-171-6/+10
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| | * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-09-172-0/+16
| | |\ \ | |_|/ / |/| | | | | | | | | | | * commit 'ab52a0effa605ad6d75cb77cf708bba795cba641': Added MPICH_SKIP_MPICXX and OMPI_SKIP_CXX to H5public.h to avoid inadvertant linking to the deprecated MPI C++ wrappers. Fixes HDFFV-10893.
* | | | Merge pull request #1927 in HDFFV/hdf5 from ↵Dana Robinson2019-09-172-0/+16
|\ \ \ \ | |/ / / | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit 'f5a84c9856888446e329dd36bff842e5a2db708c': Added MPICH_SKIP_MPICXX and OMPI_SKIP_CXX to H5public.h to avoid inadvertant linking to the deprecated MPI C++ wrappers. Fixes HDFFV-10893.
| * | | Added MPICH_SKIP_MPICXX and OMPI_SKIP_CXX to H5public.h to avoid inadvertantDana Robinson2019-09-172-0/+16
|/ / / | | | | | | | | | linking to the deprecated MPI C++ wrappers. Fixes HDFFV-10893.
| * | HDFFV-10905 fix test scripts for no zlibAllen Byrne2019-09-172-7/+11
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| * | HDFFV-10903 - fix VFD constants in JNIAllen Byrne2019-09-171-2/+14
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-09-173-4/+26
| |\ \ | |/ / |/| | | | | | | | | | | * commit '046e6e8770212dc020279aba1d7a5c9aa5ec5913': Added a release note for HDFFV-10892 (fcntl lock bug). Fix segfault after H5VL_loc_params_t fix merge
* | | Merge pull request #1924 in HDFFV/hdf5 from ↵Dana Robinson2019-09-161-0/+22
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '387d2e671c597a51b4166667a16e740a8e1449fa': Added a release note for HDFFV-10892 (fcntl lock bug).
| * | | Added a release note for HDFFV-10892 (fcntl lock bug).Dana Robinson2019-09-161-0/+22
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* | | | Merge pull request #1923 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2019-09-162-4/+4
|\ \ \ \ | |/ / / |/| | | | | | | | | | | * commit 'db1022ef5dad4ee450ca092b8b471040f405bbcf': Fix segfault after H5VL_loc_params_t fix merge
| * | | Fix segfault after H5VL_loc_params_t fix mergeJordan Henderson2019-09-162-4/+4
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-09-163-6/+6
| |\ \ | |/ / |/| | | | | | | | * commit 'c1c522f6ce8f6d7e44e6ea99860b19228f46952a': Fix issue in H5Lcreate_hard and H5Olink where entire H5VL_loc_params_t structure was passed via varargs
* | | Merge pull request #1922 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-09-168-646/+533
|\ \ \ | |/ / | | | | | | | | | * commit 'b477f9bcc7bb83d7c06e1d09f428030f51d71897': HDFFV-10901 add missing config options
| * | HDFFV-10901 add missing config optionsAllen Byrne2019-09-138-646/+533
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* | | Merge pull request #1887 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2019-09-163-6/+6
|\ \ \ | |/ / |/| | | | | | | | * commit '0de0965c61823186ac61c0d6876d4d77578e5bcc': Fix issue in H5Lcreate_hard and H5Olink where entire H5VL_loc_params_t structure was passed via varargs
| * | Fix issue in H5Lcreate_hard and H5Olink where entire H5VL_loc_params_t ↵Jordan Henderson2019-08-213-6/+6
| | | | | | | | | | | | structure was passed via varargs
* | | Merge pull request #1920 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-09-1317-201/+545
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '05f49d5ffdbd4cf9e967d60a3a0efd0ca7f2c820': (22 commits) HDFFV-10854 add release note for windows Fix get home dir for windows Use variable for test output Allow tests to dump output if not comparing revert as CHECK will first check for exception Clear exception for getting JNI string to clear the exception Correct Windows check revert windows change Windows ssl headers are not in system loacation Add include dirs and default lib for windows Add policy to use <package>_ROOT Add statement for label if code unimplemented Update Windows require for CURL to CMake 3.13 Fix unused var Add updated find module for earlier CMake versions Correct label and var names Add back missing java implementation use h5test.h add test library special windows override ...
| * | | HDFFV-10854 add release note for windowsAllen Byrne2019-09-121-3/+28
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