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* Added line for new fileBinh-Minh Ribler2020-11-121-0/+2
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* Removed the line, added by mistake.Binh-Minh Ribler2020-11-121-1/+0
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* Added a missing line.Binh-Minh Ribler2020-11-121-0/+1
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* Fixed typo again.Binh-Minh Ribler2020-11-111-1/+1
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* Fixed typoBinh-Minh Ribler2020-11-111-1/+1
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* Miscellaneous updateBinh-Minh Ribler2020-11-114-1/+8
| | | | | - added test for CMake - renamed new input file to conform to the existing files
* Added test for the fix HDFFV-10590Binh-Minh Ribler2020-10-282-0/+32
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* Fix HDFFV-10590Binh-Minh Ribler2020-10-2627-205/+125
| | | | | | | | | | Description This is to fix the CVE issue CVE-2018-17432. h5repack produced a segfault on a corrupted file. This fix modified the dataspace encode and decode functions per Quincey's suggestion to prevent the segfault and h5repack only failed for the corrupted file now. Platforms tested: Linux/64 (jelly)
* Merge branch 'develop' of https://github.com/HDFGroup/hdf5 into developBinh-Minh Ribler2020-10-26193-15258/+18024
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| * Merge pull request #59 from derobins/trivial/HDprefixLarry Knox2020-10-2467-360/+444
| |\ | | | | | | HD prefix updates in src/ and test/
| | * Restores erroneously deleted key_id field from S3 VFDDana Robinson2020-10-241-1/+1
| | | | | | | | | | | | | | | Accidentally deleted while preparing the PR. Only existed in a branch.
| | * HD prefix updates in src/ and test/Dana Robinson2020-10-2467-361/+445
| | | | | | | | | | | | | | | | | | | | | Adds missing HD prefixes to API calls in src and test. Adds some extra processing to bin/checkposix to keep the noise levels down when running the script (not comprehensive).
| * | Merge pull request #56 from derobins/minor/implicit_fallthroughLarry Knox2020-10-237-3/+39
| |\ \ | | |/ | |/| Removes -Wimplicit-fallthrough=5 from the gcc warnings
| | * Removes -Wimplicit-fallthrough=5 from the gcc warningsDana Robinson2020-10-227-3/+39
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | -Wimplicit-fallthrough=3 is added by -Wextra, which we already set. Bumping the warning level only changes how fall-through comments are parsed, with level 5 turning off fall-through comments entirely. This is unnecessary and results in having to do extra work to squash warnings when included external code uses fall-through. This change also adds /* FALLTHROUGH */ comments where H5_ATTR_FALLTHROUGH is used so compilers that don't use attributes but do respect fall-through comments don't raise spurious warnings.
| * | Merge pull request #55 from byrnHDF/developLarry Knox2020-10-223-14/+14
| |\ \ | | |/ | |/| Correct SZ options for building plugins
| | * Correct SZ options for building pluginsAllen Byrne2020-10-213-14/+14
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| * Merge pull request #49 from byrnHDF/developLarry Knox2020-10-202-1/+3
| |\ | | | | | | options corrections
| | * URL and options correctionsAllen Byrne2020-10-192-1/+3
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| * | Merge pull request #47 from byrnHDF/developLarry Knox2020-10-195-17/+18
| |\ \ | | |/ | | | Whitespace and url correction
| | * Whitespace and url correctionAllen Byrne2020-10-195-17/+18
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| * Update javadoc comments to reduce warnings (#41)Allen Byrne2020-10-1644-98/+2964
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| * Merge pull request #37 from takluyver/description-errnoLarry Knox2020-10-151-0/+6
| |\ | | | | | | Note that the description for system errors may be used by h5py
| | * More general message about using description for errnoThomas Kluyver2020-10-151-2/+6
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| | * Note that the description for system errors may be used by h5pyThomas Kluyver2020-10-151-0/+2
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| * Merge pull request #31 from byrnHDF/developLarry Knox2020-10-093-5/+4
| |\ | | | | | | Comment adjustments
| | * Comment adjustmentsAllen Byrne2020-10-083-5/+4
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| * Merge pull request #25 from byrnHDF/developLarry Knox2020-10-075-130/+18
| |\ | | | | | | gitub workflow changes
| | * Remove obsolete fileAllen Byrne2020-10-072-112/+0
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| | * Merge remote-tracking branch 'origin/develop' into developAllen Byrne2020-10-0741-14551/+14431
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| * | Update reformatting settings, trace wrapping, and printf-format strings (#22)Quincey Koziol2020-10-0641-14551/+14431
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Add BEGIN_FUNC / CATCH / END_FUNC to macros * Remove incorrect trailing '{' * Update trace script to wrap H5TRACE macros at 110 characters and improve comments for code that performs this operation. * Clean up printf-formatting in H5public.h and correct some oversights in the code. * Reformat with BEGIN_FUNC / END_FUNC handled correctly by clang-format * Run clang-format on changes. * Correct H5_SIZEOF_HSIZE_T/H5_SIZEOF_HSSIZE_T macros to match typedef. * And make the undef value match also. * Update comment * Update clang-format actions to exclude generated files. * Post-process generated H5LTparse.h file as well as H5LTparse.c file. * Fix formatting * Update version of github clang-format action
| | * Update code ownersAllen Byrne2020-10-071-3/+3
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| | * Merge branch 'develop' of https://github.com/HDFGroup/hdf5.git into developAllen Byrne2020-10-060-0/+0
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| * | Fix VFD h5repacktest (#20)Allen Byrne2020-10-067-137/+141
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * h5repacktest VFD fix and formatting changes * Fix memory leak in H5PL__find_plugin_in_path When encountering a directory, the current loop iteration was skipped without freeing the memory allocated for the path. * Refactor parser GCC diagnostic statements * genparser on jelly with default bison/flex Co-authored-by: Michael Kuhn <michael.kuhn@ovgu.de>
| * | Merge pull request #15 from lrknox/developLarry Knox2020-10-052-10/+7
| |\ \ | | | | | | | | Correct entries related to --enable-build-mode and --enable-profiling in
| | * | Correct entries related to --enable-build-mode and --enable-profiling inLarry Knox2020-10-032-10/+7
| | | | | | | | | | | | | | | | INSTALL file, and remove obsolete SZIP paragraph from COPYING file.
| * | | Merge pull request #12 from byrnHDF/developLarry Knox2020-10-0510-23/+23
| |\ \ \ | | | | | | | | | | HDFFV-11096 fix typo in h5dump usage text
| * \ \ \ Merge pull request #16 from michaelkuhn/fix-plugin-path-leakLarry Knox2020-10-051-1/+3
| |\ \ \ \ | | | | | | | | | | | | Fix memory leak in H5PL__find_plugin_in_path
| | * | | | Fix memory leak in H5PL__find_plugin_in_pathMichael Kuhn2020-10-051-1/+3
| |/ / / / | | | | | | | | | | | | | | | | | | | | When encountering a directory, the current loop iteration was skipped without freeing the memory allocated for the path.
| | | | * Update for minimum of two ownersAllen Byrne2020-10-061-12/+12
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| | | | * Correct entries related to --enable-build-mode and --enable-profiling inLarry Knox2020-10-062-10/+7
| | | | | | | | | | | | | | | | | | | | INSTALL file, and remove obsolete SZIP paragraph from COPYING file.
| | | | * github environment variable changeAllen Byrne2020-10-062-4/+4
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| | | | * genparser on jelly with default bison/flexAllen Byrne2020-10-062-90/+90
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| | | | * Refactor parser GCC diagnostic statementsAllen Byrne2020-10-063-34/+44
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| | | | * Fix memory leak in H5PL__find_plugin_in_pathMichael Kuhn2020-10-051-1/+3
| | | | | | | | | | | | | | | | | | | | | | | | | When encountering a directory, the current loop iteration was skipped without freeing the memory allocated for the path.
| | | | * h5repacktest VFD fix and formatting changesAllen Byrne2020-10-053-13/+7
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| | * | HDFFV-11096 replace backticks with doublequotesAllen Byrne2020-10-0410-23/+23
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| | * | HDFFV-11096 fix typo in h5dump usage textAllen Byrne2020-10-039-9/+9
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| * | Merge pull request #11 from byrnHDF/developLarry Knox2020-10-031-0/+1
| |\ \ | | |/ | |/| Add mingw define
| | * Add mingw defineAllen Byrne2020-10-021-0/+1
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* | Fix HDFFV-10590Binh-Minh Ribler2020-10-2627-127/+212
|/ | | | | | | | | | Description This is to fix the CVE issue CVE-2018-17432. h5repack produced a segfault on a corrupted file. This fix modified the dataspace encode and decode functions per Quincey's suggestion to prevent the segfault. h5repack only failed for the corrupted file now. Platforms tested: Linux/64 (jelly)