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* [svn-r4719] MuQun Yang2001-12-133-9/+4
| | | | | | | | | Purpose: minor code changes for SDS conversion with unlimited dimension case Description: Solution: Platforms tested: eirene
* [svn-r4718] MuQun Yang2001-12-131-0/+4
| | | | | | | | | | | | | | Purpose: parameter file Description: handle parameters in various special cases. Users donot even have to use this file if they don't have those special needs. 1) memory optimization (should always be set to 0 without handling huge SDS array conversion) 2) unlimited dimension with zero current size, users can use this file to define their chunk size. Solution: Platforms tested: RedHat Zoot 6.2
* [svn-r4717] MuQun Yang2001-12-131-20/+47
| | | | | | | | | | | | | | | | | | | | | | | | Purpose: a bug fix a feature added Description: 1.conversion of unlimited dimension data with the current dimensional size 0 2. Use a parameter file to control some special cases: 1) To subdivide the huge array into hyperslabs, a memory buffer size has i to be set. 2) when current dimensional size is 0, a default chunk size can be set. Solution: bug fixed 1. Old approach: the current dimensional size is set to H5S_UNLIMITED, which is a huge number. The default chunk size is set as a *FIXED* default value. 2. New approach: the current dimensional size is set to the current value 0. Users can provide the chunk size through a parameter file. Platforms tested: eirene [machines you have tested the changed version. This is absolute important. Test it out on at least two or three different platforms such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and 64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
* [svn-r4716] Raymond Lu2001-12-131-0/+8
| | | | | | | Purpose: Update Description: New feature of file close behavior.
* [svn-r4715] Purpose:Albert Cheng2001-12-131-25/+302
| | | | | | | | | | | bug fix, new feature Description: Added HDF5 write in do_write. Added a complete do_read. Still need timing code for the read part. Platforms tested: eirene (pp), modi4(pp). Did not test serial since all changes were done in parallel area.
* [svn-r4714] Purpose:Albert Cheng2001-12-131-1/+2
| | | | | | | | Bug fix Description: Fixed a previous commit that introduced an undeclared variable error. Platforms tested: eirene (serial, pp), modi4(pp)
* [svn-r4713] Binh-Minh Ribler2001-12-132-2/+2
| | | | | | | | | | | Purpose: Removing warnings Description: H5IdComponent::operator= shouldn't be virtual because the subclass' operator= have different type for the rhs argument. Removed virtual. Platforms tested: SunOS 5.7 (arabica) Linux 6.2 (eirene)
* [svn-r4712] Bill Wendling2001-12-121-2/+2
| | | | | | | | | | | | Purpose: DOH! Description: Ugh! I forgot to add the -m flag to the list of "short" parameter codes. It wasn't even looking for them. *sigh* Solution: Added it Platforms tested: Linux
* [svn-r4708] Purpose:Albert Cheng2001-12-121-39/+86
| | | | | | | | | | | | | | | Bug fixes, new features Description: There was a coding error in handling file open flags. Changed it to use &. Added do_cleanup to cleanup temporary test files but only if $HDF5_NOCLEANUP is not set. This is consistent with other test programs. Added logic so that each process is writing its own slabs of data only. Moved the number of process, rank of process and the communicator used for PIO run to be global variables. Makes the coding easier. (but this is not thread-safe.) Platforms tested: modi4(pp) and eirene(pp).
* [svn-r4707] Binh-Minh Ribler2001-12-125-17/+7
| | | | | | | | | | | | Purpose: Bug fixing Description: H5IdComponent::operator= shouldn't be virtual because the subclass' operator= have different type for the rhs argument. Removed virtual Platforms tested: SunOS 5.7 (arabica) IRIX64 (modi4) - only tested that the warnings went away, still working on other configuration problems.
* [svn-r4706] Purpose:Quincey Koziol2001-12-1220-292/+285
| | | | | | | | | | | | Code cleanup Description: Tweaked internal error handling macros to reduce the size of the library's object code by about 10-20%. Also cleaned up some compiler warnings... Platforms tested: FreeBSD 4.4 (sleipnir)
* [svn-r4704] MuQun Yang2001-12-123-0/+0
| | | | | | | | | Purpose: fix installexample.bat Description: erase backslash at the end of the directory path Solution: Platforms tested:
* [svn-r4703] Bill Wendling2001-12-121-6/+7
| | | | | | | | | | Purpose: Feature Fix Description: Changed default size of file to 512MB. The "-m" flag is now in megabytes as well. This makes running things a bit faster. Platforms tested: Linux
* [svn-r4702] MuQun Yang2001-12-121-4/+21
| | | | | | | | | | Purpose: bug fixed Description: Make HDF4 dataset converted from Vdata extensible. Solution: Platforms tested: RedHat 6.2(Linux)
* [svn-r4701] MuQun Yang2001-12-123-0/+0
| | | | | | | | | | | | Purpose: bug fixed Description: HDF4 Vdata is extensible, when converted, the new HDF4 data set should also be extensible. Solution: Make the HDF4 dataset converted from Vdata unlimited dimensions. These three testing files should be updated accordingly. Platforms tested: Linux, RedHat 6.2
* [svn-r4700] Purpose:Albert Cheng2001-12-111-4/+15
| | | | | | | | new feature Description: It writes to MPIO files now. Platforms tested: eirene (pp)
* [svn-r4699] Purpose:Albert Cheng2001-12-112-115/+170
| | | | | | | | Bug fixes, feature, ... Description: Now it can do raw write. Platforms tested: modi4(pp), eirene (pp)
* [svn-r4698] Bill Wendling2001-12-112-27/+27
| | | | | | | | | | | | | | | Purpose: Bug Fix Description: Fixed so that it will display the correct timing data. It will also write to the correct file (which it wasn't before). Solution: Put the code in for displaying the time. Had to change the way I was passing an object to the pio_fopen() function from just being a structure to being a pointer so that the changes could be propagated back. Platforms tested: Linux
* [svn-r4697] Bill Wendling2001-12-111-2/+5
| | | | | | | | | | | | Purpose: Bug Fix Description: I wasn't calculating the total time correctly. Solution: I had to subtract the previous time from the current time. This wasn't being done...DOH Platforms tested: Linux
* [svn-r4696] Raymond Lu2001-12-1126-94/+1124
| | | | | | | | | | | | | | | | | Purpose: Modify H5Fclose behavior Description: The HDF5 actual file close behaves in several ways in terms of if there are still objects(dataset, group, datatype) opened in file. Solution: Added a new file access property, file close degree. It has four values, H5F_CLOSE_DEFAULT H5F_CLOSE_WEAK H5F_CLOSE_SEMI H5F_CLOSE_STRONG The way a file is closed is decided by these values. Platforms tested: IRIX64 6.5, SunOS 5.6, FreeBSD 4.4
* [svn-r4695] Purpose:Quincey Koziol2001-12-112-40/+2
| | | | | | | | | | | | | | | | | | Bug Fix Description: The file metadata macros generate unaligned access warnings on the IA64 architecture. Solution: Got rid of bogus big-endian vs. little-endian differentiation when encoding and decoding file metadata and use proper set of macros to prevent unaligned access problems. This fixes bug #672. Platforms tested: FreeBSD 4.4 (sleipnir)
* [svn-r4693] Purpose:Quincey Koziol2001-12-113-2/+102
| | | | | | | | | | | | | | | | | | | | Bug Fix Description: The code in H5Sselect_hyperslab_valid contained an fencepost error and is allowing selections which overlap the extent by exactly one element in any dimension to pass as valid instead of flagging the selection as invalid. This bug only affects hyperslabs which have been OR'ed together, not the selection from a single H5Sselect_hyperslab. This fixes bug #550. Solution: Changed an '>' to an '>=' and added new regression test to check for error. Platforms tested: FreeBSD 4.4 (sleipnir)
* [svn-r4691] Bill Wendling2001-12-103-17/+13
| | | | | | | | | Purpose: Small Fixes Description: After conversation with Albert, here are some small fixes for the performance stuff. Not too significant. Though, we did add the "buffer size" as a parameter I pass to the engine.
* [svn-r4690] Bill Wendling2001-12-101-41/+41
| | | | | | | | | | | | | | Purpose: Feature Fix Description: Added code so that it measures the time it takes to do I/O and return that to the calling function. This code doesn't quite work yet. There is something wrong with the MPI code in the "pio_engine.c" file...I don't know what's up with it... Platforms tested: Linux
* [svn-r4689] Bill Wendling2001-12-102-4/+26
| | | | | | | | | | Purpose: Feature Fix Description: Added code so that it will actually output some of the timing measurements. Platforms tested: Linux
* [svn-r4688] Bill Wendling2001-12-102-50/+63
| | | | | | | | | | | | | Purpose: Bug Fix Description & Solution: In the test for "namespace", we needed to include the "iostream" header file to remove errors for strict compilers who need iostream for namespaces. I moved the test for namespace to after the test for "old header filenames" to make sure that I'm #including the correct iostream ("iostream" or "iostream.h"). Platforms tested: Linux
* [svn-r4687] Bill Wendling2001-12-102-10/+7
| | | | | | | | | | Purpose: Small warning removals Description: Just removed a few more warnings to make the compile go a bit smoother... Platforms tested: Linux
* [svn-r4686] Purpose:Albert Cheng2001-12-101-2/+2
| | | | | | | | Bug fix Description: LIBTOOLS has to come before LIBHDF5 in order to link in HDF5 API. Platforms tested: modi4(pp), eirene (serial and pp).
* [svn-r4685] Purpose:Albert Cheng2001-12-101-30/+37
| | | | | | | | | | Bug fix Description: Cleaned up obvious syntax errors to make it to compile. Changed unnecessarily unsigned variables to signed to avoid messy compiler warnings. Platforms tested: eirene (parallel)
* [svn-r4683] Purpose:Quincey Koziol2001-12-071-0/+4
| | | | | | | | | | | | | | Bug fix. Description: Fix fortran stub for H5P[gs]et_hyper_cache. Solution: Made the fortran subs not execute any function calls into the library, unless v1.4 compatibility is turned on. Elena will be following this up with a real fix. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4682] Purpose:Albert Cheng2001-12-061-0/+10
| | | | | | | | | | | | | | Bug fix Description: A a build had occurred in the source tree ($CURRENT) and did not do a distclean, the left over files would interfere with srcdir build. Solution: Added a "make distclean" in the "checkout" option to clean up the $CURRENT just in case. Not necessarily the most optimal spot to do the cleaning but convenient. Platforms tested: Eirene.
* [svn-r4680] Purpose:Quincey Koziol2001-12-068-6/+20
| | | | | | | | | | | | | Code cleanup Description: Property that H5P(g|s)et_hyper_cache uses is no longer in use inside the library. Solution: Removed H5P(g|s)et_hyper_cache API functions, except when backward compatibility is turned on. When backward compatibility is turned on, the property is defined by the library, but unused internally. Platforms tested: FreeBSD 4.4 (sleipnir)
* [svn-r4679] Snapshot version 1.5 release 16Albert Cheng2001-12-066-14/+21
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* [svn-r4678] Frank Baker2001-12-051-49/+123
| | | | | | | | | | | | | | | | | | Purpose: Expanded descriptions and minor copy edits. Description: H5Fcreate, H5Fopen, H5Fclose Changes stemming from Albert's H5Fxxx proposal Added IN/OUT designations to parameters. Minor formatting and copy edits [Sorry, but "no space left on device" error prevents deletion of extra blank lines!] Platforms tested: IE 5
* [svn-r4676] Purpose:Quincey Koziol2001-12-056-0/+166
| | | | | | | | | | | | | | | | Backward Compatibility Fix Description: One of H5P[gs]et_buffer's parameters changed between v1.4 and the development branch. Solution: Added v1.4 compat stuff around H5P[gs]et_buffer implementation and testing to allow v1.4.x users to continue to use their source code without modification. These changes are for everything except the FORTRAN wrappers - I spoke with Elena and she will make the FORTRAN wrapper changes. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4675] Purpose:Quincey Koziol2001-12-052-2/+115
| | | | | | | | | | | | | | | | | | Backward Compatibility Fix Description: One of H5P[gs]et_sieve_buf_size's parameters changed between v1.4 and the development branch. Solution: Added v1.4 compat stuff around H5P[gs]et_sieve_buf_size implementation and testing to allow v1.4.x users to continue to use their source code without modification. There are no C++ or FORTRAN wrappers for these functions. There are also no regression tests for these functions... :-( Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4674] Purpose:Quincey Koziol2001-12-052-0/+113
| | | | | | | | | | | | | | | | | | Backward Compatibility Fix Description: One of H5P[gs]et_meta_block_size's parameters changed between v1.4 and the development branch. Solution: Added v1.4 compat stuff around H5P[gs]et_meta_block_size implementation and testing to allow v1.4.x users to continue to use their source code without modification. There are no C++ or FORTRAN wrappers for these functions. There are also no tests for these API functions currently... :-( Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4673] Purpose:Quincey Koziol2001-12-053-0/+65
| | | | | | | | | | | | | | Backward Compatibility Fix Description: H5Pset_fapl_log's parameters have changed from a simple "verbosity" level to bit-masked flags to enable various behaviors. Solution: Added in v1.4 compat stuff, on the unlikely chance that others are actually using this code in some production way. There are no C++ or FORTRAN wrappers for this call. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4672] Purpose:Albert Cheng2001-12-051-1/+2
| | | | | | | | | | | | | | | | | | | | | Bug fix Description: Snapshot does "make check" directly, instead of building all binary first. This means it does not cover code that are not tested (e.g., example, perform). (That explained why the errors in the PIO performance code were not reported in daily test but blew up when people built the library the "normal" way.) It is done this way so that the snaptest aborts as soon as the first test failed rather than after all code are compiled. Solution: Add "make" (to build all binary) before "make check". The allows snaptest to fail as soon as the first compiling failure. If we wish the snaptest to abort on the first test failure, the two can be swapped as "make check && make ...". (It would appear strange to run tests then make binary.) Platforms tested: Would be tested in the daily test tonight. (I should have tested it first but I started this commit process already. Sorry.)
* [svn-r4670] Purpose:Quincey Koziol2001-12-057-2/+184
| | | | | | | | | | | | | | | | Backward Compatibility Fix Description: One of H5P[gs]et_sym_k's parameters changed between v1.4 and the development branch. Solution: Added v1.4 compat stuff around H5P[gs]et_sym_k implementation and testing to allow v1.4.x users to continue to use their source code without modification. These changes are for everything except the FORTRAN wrappers - I spoke with Elena and she will make the FORTRAN wrapper changes. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4669] Purpose:Quincey Koziol2001-12-056-3/+186
| | | | | | | | | | | | | | | | Backward Compatibility Fix Description: One of H5P[gs]et_cache's parameters changed between v1.4 and the development branch. Solution: Added v1.4 compat stuff around H5P[gs]et_cache implementation and testing to allow v1.4.x users to continue to use their source code without modification. These changes are for everything except the FORTRAN wrappers - I spoke with Elena and she will make the FORTRAN wrapper changes. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4668] Binh-Minh Ribler2001-12-051-36/+30
| | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: Eliminated warnings Description: On IRIX and Windows 98, if a function, that returns a value, throws an exception in "else" statement, the compiler still complains that the function doesn't return a value. Solution: Replaced: if (something valid) return a value else throw an exception with: if (something invalid) throw an exception return a value Platforms tested: Windows 98 SunOS 5.7 (arabica) Linux 6.2 (eirene) IRIX64 (modi4) - only tested that the warnings went away, still working on other configuration problems.
* [svn-r4667] Bill Wendling2001-12-043-78/+223
| | | | | | | | | | | | Purpose: Code Cleanup and Feature Add Description: Finally checking in the changes I made to the performance code. It just modularizes it a bit more and performs some more checks, etc. I also renamed the timer functions to be more inline with how other things are named here... Platforms tested: Linux
* [svn-r4666] Purpose:Quincey Koziol2001-12-041-3/+5
| | | | | | | | | | | Bug fix Description: Missing a statement for an else branch when HAVE_GETTIMEOFDAY was defined, which caused most machines to fail compiling. Solution: Re-arranged if/else statement to eliminate problem. Platforms tested: FreeBSD 4.4 (sleipnir)
* [svn-r4665] Purpose:Quincey Koziol2001-12-033-116/+193
| | | | | | | | | Code cleanup Description: Changed the logging file driver to use bitmasked flags for features to enable, instead of using a verbosity level. Platforms tested: Solaris 2.6 (baldric)
* [svn-r4664] Purpose:Quincey Koziol2001-12-032-70/+68
| | | | | | | | Code cleanup Description: Check in some small speedups for chunked storage I/O. Platforms tested: Solaris 2.6 (baldric)
* [svn-r4661] Bill Wendling2001-11-301-1/+5
| | | | | | | | | | | | Purpose: Bug Fix Description: We needed to support C++ on SP3. Libtool was putting a "-bnso" flag on the compile line. This was causing the C++ compiler to barf.. Solution: Removed the line. Platforms tested: OSF5.1
* [svn-r4658] Elena Pourmal2001-11-282-0/+12
| | | | | | | | | Purpose: Maintenance Description: Added configuration file for SP3 to support C++ Platforms tested: NERSC SP3
* [svn-r4657] MuQun Yang2001-11-281-8/+8
| | | | | | | | | | | | | Purpose: a minor bug on H5T.c Description: should be HEREUTRN_ERROR(...,...,int,...) instead of HERUTRN_ERROR(...,...,int*,...) Solution: change HERETURN_ERROR(...,...,NULL,...) into HERETURN_ERROR(...,...,FAIL,...) Platforms tested: windows 2000
* [svn-r4656] Purpose:Quincey Koziol2001-11-272-4/+8
| | | | | | | | | Bug fix Description: Moved some executable code out of an assert() and check the results of the code with an assert(). Platforms tested: Solaris 2.6 (baldric)
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