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* [svn-r13925] Purpose: intermediate checkin for offsetof fix for PGI compiler.Mike McGreevy2007-06-2845-175/+309
| | | | | | | | | | Description: added new configuration to generate a pubconf file in the c++/src directory, H5cxx_pubconf.h. When C++ compiler recognizes 'offsetof', the macro H5_CXX_HAVE_OFFSETOF is defined in the new pubconf file. tested: kagiso, smirom
* [svn-r13924] Purpose: CleanupScott Wegner2007-06-279-1031/+21
| | | | | | | | Description: Clean up the MANIFEST a little bit. Also removed some batch files and empty folders that were added mistakenly in the last check-in. Tested: Too minor.
* [svn-r13923] Purpose: Update MANIFESTScott Wegner2007-06-271-327/+1104
| | | | | | | | Description: Many files added removed in last check-in. I still need to clean up a little bit, but I just wanted to get this in before the Daily Tests start. Tested: chkmanifest on kagiso
* [svn-r13922] Purpose: First step in VS6 DepreciationScott Wegner2007-06-27547-2095/+69296
| | | | | | | | | | | | | | | | | Desciption: This is the first major check-in in the process of depreciating Visual Studio 6.0. We create a new directory, windows_vs6, which now holds all of our previous VS6 project files. We expect to maintain this directory for only a short time (perhaps one release), so users have time to make the change. The ./windows directory now contains project files for Visual Studio .Net, as well as existing source and test scripts. This will allow us to greatly simplify the build process for the majority of our users. We have created a new solution (.Net equivolent of workspace) that houses the Fortran project files. This allowed us to remove these files from the main solution, as well as streamline the conversion in the Fortran solution. It is also much easier now to convert to Visual Studio 2005 files. Notes: I didn't update the MANIFEST with this check-in, I will make those changes shortly. Also, I haven't yet updated the documentation to reflect this check-in. That is going to require more work. We will be giving a seminar in the coming weeks about .Net and how to migrate over. Tested: VS6/VNET/VS2005 on WinXP 32/64-bit
* [svn-r13921] Purpose: Add new file to Windows projectsScott Wegner2007-06-262-12/+42
| | | | | Description: Added new H5Dfill.c source file which was added in revision 13918.
* [svn-r13920] Description:Quincey Koziol2007-06-261-8/+8
| | | | | | | | | Uncomment some additional tests, which are [now?] working. Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13919] Description:Quincey Koziol2007-06-261-57/+14
| | | | | | | | | Clean up more redundant code for reading SOHM messages. Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13918] Description:Quincey Koziol2007-06-269-786/+873
| | | | | | | | | | Refactor fill value buffer code into one location, for better long-term maintenance. Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13917] Description:Quincey Koziol2007-06-264-15/+16
| | | | | | | | | Code & warning cleanups Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13916] Purpose: Fix MinGW inconsistencyScott Wegner2007-06-262-10/+4
| | | | | | | | | | Description: Windows does not accept the buffer size parameter of setvbuf to be less than 2. Previously, we had our fix split between two files, H5private.h and the Windows H5pubconf.h. This was a problem for MinGW, because it generates its own H5private.h. This moves the fix out of H5pubconf.h and into H5private.h. This shouldn't affect other platforms. Tested: MinGW on WinXP
* [svn-r13915] Description:Quincey Koziol2007-06-262-68/+78
| | | | | | | | | Clean up SOHM code, to copy message in H5HF_op call instead of separate calls to H5HF_get_obj_len() and H5HF_read(). Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago)
* [svn-r13914] Description:Quincey Koziol2007-06-265-2/+27
| | | | | | | Clean up files generated during testing. Tested on: Linux/32 2.6 (chicago)
* [svn-r13913] Maintenance after beta2 release: used bin/h5vers script to ↵Elena Pourmal2007-06-255-16/+16
| | | | change version number to 1.8.0-beta2poat1
* [svn-r13909] Mainetnance before createing beta2 tar ballhdf5-1_8_0-beta2Elena Pourmal2007-06-255-16/+16
| | | | Changed version number to 1.8.0-beta2
* [svn-r13908] Update support information of abe.Raymond Lu2007-06-251-4/+7
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* [svn-r13907] Maintenance: added more information about tested platforms for ↵Elena Pourmal2007-06-251-4/+25
| | | | 1.8.0 beta 2 release
* [svn-r13906] Purpose: Update supported platformsScott Wegner2007-06-251-10/+12
| | | | | | | Description: Updated RELEASE.txt to reflect support for 64-bit Windows. Also updated the testing table, and removed some old Windows-related issues that are no longer present. No testing needed.
* [svn-r13905] Purpose:Albert Cheng2007-06-251-43/+45
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The "h5dump -o ..." test generates temporay files in the testfiles of the source code and later on remove them. This could cuase a racing condition if more than one --srcdir build is using the same copy of the source code. Since they use the same file name in the testfiles, they may conflict with each other. Solution: Changed to generate the temporary files in the build-dir's own testfiles directory. Since the build-dir can have different names, the CMP of expected output now skip the first three lines which are label lines that contains the location of the temporary. Also removed the CREATE code since actual files created now cannot be blindly copied to the expect files. Also, expected files should be create by explicit action and careful inspection of files generated. Tested platform: Done in kagiso, both by --src-dir and in-place build.
* [svn-r13902] Purpose:Albert Cheng2007-06-251-3/+2
| | | | | | | Simple code improvement to have more unified code. Tested: in kagiso only since it is a simple script change.
* [svn-r13901] Maintenance: forgot to remove old HP configuration files from ↵Elena Pourmal2007-06-241-2/+0
| | | | | | MANIFEST; fixed; checked with bin/chkmanifest
* [svn-r13900] Updated information about HPUX 11.23; removed some old platformsElena Pourmal2007-06-241-10/+4
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* [svn-r13899] Maintenance: Deleted configuration files for unsupported HP ↵Elena Pourmal2007-06-232-116/+0
| | | | | | platforms. No testing is needed.
* [svn-r13894] Description:Scott Wegner2007-06-203-4/+4
| | | | | | | | | | | On Windows, Mingw interprets all parameters starting with '/' as paths, and replaces the '/' with its home directory, "C:\Windows\msys\". This was a problem in h5diff tests such as: h5diff h5diff_101.txt $FILE1 $FILE1 /g1/d1 g1/d2 -v I've removed the leading '/', as h5diff will interpret it the same either way. Tested: kagiso, linew, and smirom, via h5committest mingw on Windows XP
* [svn-r13893] Maintenance: Bump up version to beta2pre2 after creating a tar ↵Elena Pourmal2007-06-205-16/+16
| | | | ball for remote testing
* [svn-r13892] Maintenance: Changed library version to beta2pre1 in ↵Elena Pourmal2007-06-205-19/+19
| | | | | | | preparation for remote testing for the HDF5 1.8.0-beta2 release Platforms tested: kagiso (small change done by bin/h5vers script)
* [svn-r13888] Description:Quincey Koziol2007-06-191-0/+2
| | | | Added note about VL-datatype fill value bugs fixed.
* [svn-r13887] Description:Quincey Koziol2007-06-192-23/+282
| | | | | | | | | | | Add some additional tests for reading non-contiguous selections from datasets which haven't had any data written to them (both non-VL and VL datatype fill values covered) Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r13885] Modify the comment from the checkin last round.Raymond Lu2007-06-192-9/+9
| | | | No test is needed.
* [svn-r13884] The second step of optimization for compound data for the ChicagoRaymond Lu2007-06-196-96/+1488
| | | | | | | | | | | | | | | | | | | | | | | | | | company. The I/O is optimized when the source and destination members are a subset of each other one way or another, and the order is the same, and no conversion is needed. For example: struct source { struct destination { TYPE1 A; --> TYPE1 A; TYPE2 B; --> TYPE2 B; TYPE3 C; --> TYPE3 C; }; TYPE4 D; TYPE5 E; }; or struct destination { struct source { TYPE1 A; --> TYPE1 A; TYPE2 B; --> TYPE2 B; TYPE3 C; --> TYPE3 C; }; TYPE4 D; TYPE5 E; }; The optimization is simply moving data from the source to the appropriate places in the buffer and bypass the reading of the background data and data conversion. Tested on smirom, liberty, sol, and copper.
* [svn-r13883] Description:Quincey Koziol2007-06-192-349/+634
| | | | | | | | | | | Fixed bugs w/VL-datatype fill values for chunked dataset storage. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13881] Purpose: Updated C++ examples expected outputScott Wegner2007-06-191-10/+9
| | | | | | | | | Description: Bring the expected output for the C++ examples up-to-date. This file is used in the Windows test script. It is also used by ./c++/examples/testexamples.sh, although this script is never run by hand. 'make check' runs the script generated by testh5c++.sh.in, which doesn't use expected.out. Tested: VS6 on WinXP kagiso
* [svn-r13879] Purpose:HDF Tester2007-06-191-1/+1
| | | | | | | | | | | | Bug fix. Description: Test test_misc25b() open an existing test data file with RDWR unnecessarily. (This was discovered during read-only test.) Changed file open mode to RDONLY. Tested platform: Kagiso (readonly) only since it is a trivial change.
* [svn-r13878] Description:Quincey Koziol2007-06-191-11/+16
| | | | | | | | | Improve efficiency of writing VL-datatype fill values. Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13876] Purpose: Fix mingw errorsMuQun Yang2007-06-181-1/+0
| | | | | | | | Description: Removed sys/uio.h dependency, which was originally added to clean up compiler warnings. It is no longer needed, and needs to be removed to compile on mingw, which doesn't have this header. Tested: kagiso, duty, mingw
* [svn-r13874] Pedro Vicente Nunes2007-06-184-10/+9
| | | | | | | | | | | | | | | | | Changed macro names, conflict with new compiler -- changed DATASET to H5_TOOLS_DATASET -- changed DATATYPE to H5_TOOLS _DATATYPE -- changed GROUP to H5_TOOLS_GROUP In mingw's version of winsock2.h they define: typedef unsigned int GROUP; remove STORAGELAYOUT macro, it was not used tested: linux
* [svn-r13873] Purpose: Code cleanupScott Wegner2007-06-182-9/+11
| | | | | | | | | | Description: Changed a macro in H5FDwindows.c from IO_BUF_SIZE to a more specific WINDOWS_MAX_BUF, and moved it to our H5pubconf.h, where users can customize it to their own preference. This value is needed because of a bug in the Windows _write function, it is unsafe to write buffers larger than 2GB-1 bytes in one write. Tested: VS2005 on WinXP.
* [svn-r13872] WinXP x64 does not define the error code EWOULDBLOCK, but ↵Scott Wegner2007-06-181-0/+10
| | | | | | | | instead uses its own WSAEWOULDBLOCK. Although the stream vfd isn't supported on Windows, this was requested by a user via bug #890. This won't affect any other platforms, but should help, should we ever decide to support stream vfd on Windows. Tested: kagiso, linew, smirom (via h5committest) NOT tested on Windows, as it is unsupported.
* [svn-r13871] Description:Quincey Koziol2007-06-1512-172/+147
| | | | | | | | | | | | | Fix problems with 'check-vfd' target, that were [mostly] introduced with the recent "unique, but sharable" ISOHM optimization. The problems were mostly with using the 'core' VFD, so the H5Pset_fapl_core() API call was changed to re-open existing files (therefore operating more list the sec2, stdio, etc. VFDs). This allows many more of the tests to run using the 'core' VFD, so those were enabled also. Tested on: Linux/64 2.6 (chicago2) w/check-vfd
* [svn-r13870] Description:Quincey Koziol2007-06-155-168/+376
| | | | | | | | | | Fix writing variable-length datatype fill values for contiguous dataset storage Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13868] Updated the Windows static h5pubconf.h to use our new Windows ↵Scott Wegner2007-06-152-17/+223
| | | | | | | | | | file driver by default. After thorough testing, we think the windows driver is ready to be included. I've also updated our Windows documentation file to include 64-bit instructions. The process is fairly tedious right now, but we hope to make it more straight-forward when we depreciate 6.0 and re-work our project files. Tested: 32-bit WinXP: VS6, VS.NET, and VS 2005 64-bit WinXP: VS.NET and VS 2005
* [svn-r13867] Brought VMS port up to date; made h5repack script to work again.Elena Pourmal2007-06-146-65/+62
| | | | | Platforms tested: VMS server; no other tests are needed since changes are local to the VMS command and source files.
* [svn-r13866] Updated the open command to add the _O_BINARY flag, which ↵Scott Wegner2007-06-141-27/+31
| | | | | | | Windows needs for reading and seeking. Tested: VS.NET and VS2005 on WinXP 32-bit and x64
* [svn-r13865] Purpose: Adding a new macro, H5_HAVE_OFFSETOF.Mike McGreevy2007-06-144-4/+73
| | | | | | | | Description: When the compiler has the __offsetof__ extension, the H5_HAVE_OFFSETOF macro will be defined. When the compiler does not have the extension, the macro will remain undefined. Tested: kagiso
* [svn-r13863] Added H5FDwindows.c to Windows project files, although sec2 is ↵Scott Wegner2007-06-143-15/+51
| | | | | | | | | still the default. Also added a Windows-specific macro, WINDOWS_USE_STDIO, which users can define if they'd like the Windows VFD to use the buffered low-level I/O functions. This is instead of splitting our Windows driver into two separate drivers. By default, this macro is undefined. Tested: VS6 on WinXP
* [svn-r13862] Although still not completely ready, this fixes many problems ↵Scott Wegner2007-06-131-47/+64
| | | | | | | in the new Windows file driver related to writing large buffers (4GB+). sec2 is still set as the default driver on Windows. Tested: .NET on WinXP and 2005 on WinXP x64
* [svn-r13858] Added sec2.h5 to the list of the files to be deleted.Raymond Lu2007-06-122-8/+8
| | | | | It's output file from big.c. Tested on smirom because it's a simple change.
* [svn-r13857] This test will fail without having zlib library and this is the ↵MuQun Yang2007-06-121-3/+7
| | | | | | case for windows 64-bit support. So we add a macro to skip this test if there is no zlib library. Tested at windows and linux. Too minor to use h5committest.
* [svn-r13856] H5FDwindows.h is included in the hdf5.h but we didn't put it ↵MuQun Yang2007-06-124-0/+8
| | | | | | | | | | | | | | | | into Makefile.am un der /src. So when gmake check-install is run for HDF5 examples, it will fail. Th e fix is to include a macro #ifdef H5_HAVE_WINDOW around #include H5FDwindows.h so that H5FDwindows.h will only be included on windows, not on other platforms. We've fixed with the same way for other source code that includes H5FDwindows.h. This has been tested with h5committest. However, it takes a few hours to test all tests and except kagiso. Tests on linew and smirom cannot finish. It takes forever for the fheap test. And for parallel test at kagiso, ph5diff test seems to be hanged. I think all of our changes will only affect windows. So in order not to block other developers to check in their code, we just go ahead to check our changes. Kent Yang
* [svn-r13852] Added includes in various places to make it possible to set ↵Scott Wegner2007-06-119-5/+18
| | | | | | | windows as the default vfd. Although sec2 is still default on Windows, it should now be possible to switch by simply changing H5pubconf.h . Tested: .NET 2003 on WinXP
* [svn-r13851] Further updates to our Windows file driver to make it ↵Scott Wegner2007-06-111-81/+121
| | | | | | compatible with both .NET and VS2005. Still needs extensive testing before it's ready.
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