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* [svn-r4969] Description:Albert Cheng2002-02-141-4/+3
| | | | | | | Remove perf and mpi-perf from the parallel test targets since their functions are replaced by pio_perf. Platforms tested: modi4 and eirene, both parallel modes.
* [svn-r4968] Purpose:Quincey Koziol2002-02-141-0/+1
| | | | | | Bug fix Description: Correct prototype inconsistency.
* [svn-r4965] Purpose:Quincey Koziol2002-02-147-35/+134
| | | | | | | | | | | | | Bug Fix Description: If a non-zero fill-value is used for a chunked dataset, any non-existent chunked read with an "all" selection (or a contiguous hyperslab selection) will return zero for those instead of the user's fill-value. Solution: Fixed I/O code to pass down fill-value to "optimized" I/O routines, so it will be available to fill the user's buffer with. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4964] Purpose:Albert Cheng2002-02-142-7/+25
| | | | | | | | | | | | | | Change default actions. Description: Change the default maximum number of processes (-P) to use all processes instead of just 1 (old default). Someone most likely wants to test the I/O performance with all processes involved. Also starts performance measurement with maximum number of processes and decrement it with each loop. If the performance measurement needs to restart, it can run with fewer processes if those loops have completed. Platforms tested: modi4 and eirene.
* [svn-r4956] Bill Wendling2002-02-132-535/+830
| | | | | | | | | | | | | | | | Purpose: Bug Fix Description: On some systems, doing the shell command: if test -z $DEBUG_PKG; then doesn't work if $DEBUG_PKG is null.. Solution: Changed to "if test "X$DEBUG_PKG" = "X"; then" which will do the same thing but without the error... Platforms tested: Linux
* [svn-r4953] Purpose:Bill Wendling2002-02-132-585/+591
| | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: When printing out the summary information after the configuration, the Compilation Mode and Debugging information would be incorrect. The library is set to compile to "Production" mode for a release. Yet, the default compilation mode before that was "Development". If the user doesn't specify "--enable-production" on the command line, the configure defaults to "Production" mode, but the summary still reported "Development" mode. Solution: Modified script so that after we've determined which compilation mode we're in, we reset the "enable_production" variable to the correct setting. So, we no longer have a "default". The summary part then reads the new value and uses that to determine which mode we're in. The debugging summary information was reworked so that it would output the correct summary information. Slight hacking of the summary script to check the values a bit more closely... Platforms tested: Linux (eirene)
* [svn-r4951] Pedro Vicente Nunes2002-02-131-1/+1
| | | | | | | | | | | | | Purpose: fixed a typo of the name H5S_set_extend on the call FUNC_ENTER (H5S_set_extend, FAIL); Platforms tested: w2000 octopus linux eirene sun arabica IRIX64 modi4
* [svn-r4950] Pedro Vicente Nunes2002-02-131-7/+60
| | | | | | | | | | | | Purpose: fixed a bug that made a failure on H5Screate_simple, a 1D dimemsion array was declared instead of a 2D array Platforms tested: w2000 octopus linux eirene sun arabica IRIX64 modi4
* [svn-r4948] Purpose:Quincey Koziol2002-02-132-2/+4
| | | | | | | | | | | | | Bug fix Description: When a block was preempted from the chunk cache, it is possible that one of the pointers in the algorithm is invalidated and would generate a core dump. Solution: Re-calculate the internal pointer and move the the preemption after the re-calc. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4947] Purpose:Quincey Koziol2002-02-131-0/+3
| | | | Update readme for latest bug fix
* [svn-r4943] Purpose:Bill Wendling2002-02-121-23/+23
| | | | | | | | | Cleanup Description: Added set_extend.h5 file to the CLEANUP macro in the Makefile so that it'll be removed when the other temp files are removed. Platforms tested: Linux
* [svn-r4942] Purpose:Bill Wendling2002-02-122-4/+9
| | | | | | Feature Add Description: Added set_extend to the MANIFEST and test/ directory Makefile.
* [svn-r4941] Pedro Vicente Nunes2002-02-121-0/+113
| | | | | | | Purpose: added a new test file for the new function H5Dset_extend Platforms tested: windows2000
* [svn-r4930] Snapshot version 1.5 release 20HDF Admin2002-02-094-5/+11
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* [svn-r4927] Purpose:Bill Wendling2002-02-081-0/+3
| | | | | | Feature Add Description: Added hack so that it will recognize a Hitachi platform.
* [svn-r4926] Purpose:Bill Wendling2002-02-081-1/+2
| | | | | | | | | | | Bug Fix Description: The library path was relying upon the "exec_prefix" variable. However, we weren't including that into the h5cc script. Solution: Added it. Platforms tested: Linux
* [svn-r4923] Pedro Vicente Nunes2002-02-071-0/+0
| | | | | Purpose: new all.zip with all.dsp utility, new hdf5test.dsp and updated code warrior project
* [svn-r4921] Pedro Vicente Nunes2002-02-075-0/+202
| | | | | | | | | | | | | Description: modified the below files to inlude a new public function H5Dset_extend, similar to H5Dextend, but it can lower the dimension this function requires 2 more new private functions: H5D_set_extend H5S_set_extend Platforms tested:
* [svn-r4920] Purpose:Quincey Koziol2002-02-072-28/+3
| | | | | | | | | Bug fix Description: Correct inefficient property copying when using derived property list classes. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4917] Purpose:Quincey Koziol2002-02-071-1/+1
| | | | | | | | | | Bug Fix Description: Turn down the compiler optimizations for the Cray SV1 Platforms tested: Cray SV1 (killeen.nersc.gov)
* [svn-r4915] Purpose:Quincey Koziol2002-02-071-3/+368
| | | | | | | | | | | | | | | | | | | Bug fix & feature add Description: Added new API function H5Sget_select_type to determine type of selection in a dataspace. Return values are defined by the H5S_sel_type enumerated type in H5Spublic.h Also, hyperslab operations involving a "all" or "none" selection are not generating the correct resulting selections. Solution: Added regression tests to verify correction operation of hyperslab operations against "all" and "none" selections. New tests also verify H5Sget_select_type() API call. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4914] Purpose:Quincey Koziol2002-02-076-92/+264
| | | | | | | | | | | | | | | | | | Bug fix & feature add Description: Added new API function H5Sget_select_type to determine type of selection in a dataspace. Return values are defined by the H5S_sel_type enumerated type in H5Spublic.h Also, hyperslab operations involving a "all" or "none" selection are not generating the correct resulting selections. Solution: Added more code to make hyperslab operations against an "all" or "none" selection generate the correct results. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4913] Purpose:Quincey Koziol2002-02-071-0/+3
| | | | | | | Feature add Description: Added note about a new API function.
* [svn-r4912] Purpose:Quincey Koziol2002-02-071-0/+1
| | | | | | | | | | Feature add Description: Added 'H5S_sel_type' to the list of types that the API tracing knows about. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4905] Purpose:Quincey Koziol2002-02-061-0/+168
| | | | | | | | | | | | | | | | | | | Regression tests Description: Generic property classes derived from an existing class were not having the parent class's properties copied into the new class. Additionally, derived classes were not being detected correctly. Solution: Added regression tests to verify that these fixes are working: Copied properties from parent class into derived class. Modified H5P_isa_class_real() to walk back up the chain of parent classes to proper detect derived classes. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4904] Purpose:Quincey Koziol2002-02-061-16/+49
| | | | | | | | | | | | | | | | | | Bug fix Description: Generic property classes derived from an existing class were not having the parent class's properties copied into the new class. Additionally, derived classes were not being detected correctly. Solution: Copied properties from parent class into derived class. Modified H5P_isa_class_real() to walk back up the chain of parent classes to proper detect derived classes. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4903] Purpose:Quincey Koziol2002-02-061-166/+120
| | | | | | | | Code cleanup Description: Clean up H5D_read and H5D_write routines, adding comments, etc. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4898] ./hdf5-devel/tools/h5ls/h5ls.cRobb Matzke2002-02-011-7/+7
| | | | Fixed copyright notice
* [svn-r4892] ./hdf5-devel/tools/h5ls/h5ls.cRobb Matzke2002-01-311-0/+59
| | | | | | 2002-01-31 15:22:24 Robb Matzke <matzke@arborea.spizella.com> *: Displays array data type information instead of saying `4-byte class-10 unknown'.
* [svn-r4891] Purpose:Quincey Koziol2002-01-313-176/+187
| | | | | | | | | | | | | | | Code speedup Description: Chunking I/O routines are reading in an entire chunk when performing I/O on the chunk, even if the chunk will be too large to cache. Solution: If the chunk is too large to cache, uncompressed and has been allocated space in the file, or if we are using the MPI-I/O VFD, perform the I/O directly to the chunk, instead of reading the chunk into memory, updating it and immediately writing the entire chunk back out. Platforms tested: FreeBSD 4.5 (sleipnir) (using serial access) and IRIX64 6.5 (modi4) (using parallel access with MPI-I/O)
* [svn-r4890] Frank Baker2002-01-301-1/+1
| | | | | | | | | Purpose: Bugfix Description: Corrected link to HDF5 copyright notice. Platforms tested: IE 5
* [svn-r4889] Frank Baker2002-01-301-2/+2
| | | | | | | Description: Updated copyright notice (adding 2002). Platforms tested: IE 5
* [svn-r4885] Purpose:Bill Wendling2002-01-301-2/+2
| | | | | | | | | | | Bug Fix Description: Throughput wasn't being calculated correctly. Solution: We were using a value other than the actual time. Changed so that we're using the correct structure to grab the time out of it. Platforms tested: Linux(pp)
* [svn-r4883] Purpose:Bill Wendling2002-01-301-3/+3
| | | | | | | | | | | | Bug Fix Description: For some reason, a wrong line was introduced into the ltconfig in my "Major Hack(tm)" stuff. Solution: Removed this line, which isn't supposed to be there cause that's why the Major Hack was there to begin with. Platforms tested: NERSC machine and Pacific Blue
* [svn-r4882] Purpose:Bill Wendling2002-01-302-98/+171
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Feature add and algorithm reworking. Description: Added a "--debug" flag so we can print out various extra debugging information. Reworked the algorithm so that it's printing the correct throughput. Here's how it's supposed to work: process T_0 T_1 T_2 T_3 ... T_n iteration 1 2 . . . m Retrieve the maximum time from each iteration over the number of processes. (So, if T_i had the maximum time in iteration j, then use that time). Calculate the "Throughput" of iteration j: S_j = (raw_size / T_i) Collect that information over all of the iterations. Then output the Max, Min, and Ave of all of the S_k's. Platforms tested: Linux (pp)
* [svn-r4881] Updated for the removal of examples/runexample.shAlbert Cheng2002-01-291-1/+0
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* [svn-r4880] Purpose:Albert Cheng2002-01-291-56/+0
| | | | | | | | Retired run_examples.sh. Its purpose is covered by the "check" target. Platforms tested: No tests--hard to test something that is removed. Pretty sure it is not needed by any Make targets.
* [svn-r4879] Purpose:Albert Cheng2002-01-292-5/+4
| | | | | | | | | | | | | Bug fix Description: $TEST_PROG_PARA was included in the serial tests. $TEST_PROG_PARA was not dependent on $LIBHDF5 (it should.) Solution: Adjusted the file to fix both problems. Platforms tested: eirene (pp, linux 2.2.), dangermouse (pp, linux 2.4) modi4 (pp, -64) and modi4 serial (to verify that ph5example was not tested at all.)
* [svn-r4874] MuQun Yang2002-01-281-0/+0
| | | | | | | | | | | | Purpose: check code warrior changes at HDF5 branch Description: 1. add a maro at H5config.h and H5pubconf.h to maintain the correct printf output in code warrior. 2. update code warrior project changes. Solution: Platforms tested: tested by pedro on windows ?
* [svn-r4869] Purpose:Quincey Koziol2002-01-272-7/+181
| | | | | | | | Add regression tests Description: Added regression test for using a VL-datatype in two separate files. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4868] Purpose:Quincey Koziol2002-01-271-2/+37
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fixes Description: This checkin addresses two separate bugs: #1 - When a compound datatype with a VL datatype as a field is used to read or write data, the datatype conversion paths added to the table of paths were treating the VL datatypes somewhat too genericly - they weren't dicriminating between VL datatypes used in different files and therefore there was the possibility that a path in the table having information for one file could get used with a second file, causing errors or core dumps (if the first file was closed before the later file used the path). #2 - When composite (compound, array or VL) datatype paths in the datatype conversion table are being tested to see if they can be used for the current datatypes being converted, they can cause additional conversion paths to be registered in the conversion path table. Since this causes the global table to change size and entries to move around, it is possible that the local variables tracking a potential path could become incorrect as the global table was changed out from underneath them. Both bugs fixed are described in bug #703 Solution: Two separate fixes: #1 - Changed H5T_cmp to differentiate between VL datatypes in different files and not to return datatypes in two different files as equal. #2 - Note size of global table before evaluating datatype paths. Then, after the appropriate path has been chosen, check if the size of the global table has changed and recompute the position of the path chosen in the table if necessary. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4867] Purpose:Quincey Koziol2002-01-271-4/+11
| | | | | | | | Code cleanup Description: Added some more assertions to help debug in the future... Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4866] Elena Pourmal2002-01-264-5/+6
| | | | | | | | | | | | Purpose: Maintenance Description: Several compiler's warnings caused Hitachi SR8000 F90 and C compilers to fail. Solution: Fixed the code to eliminate warnings. Platforms tested: O2K (modi4) and Solaris 2.7 (arabica)
* [svn-r4864] Snapshot version 1.5 release 19HDF Admin2002-01-264-5/+7
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* [svn-r4863] ./hdf5-devel/src/H5Tpkg.hRobb Matzke2002-01-251-0/+5
| | | | | | | | | | | | More optimizing for byte order conversion. Mostly just making code easier to follow by simplifying Duff's device coding of the loops. I also split the conversion function into two functions with different names so output from H5T debugging indicates whether the optimized or unoptimized case was invoked. 2002-01-25 10:48:34 Robb Matzke <matzke@arborea.spizella.com> *: Added prototype for H5T_conv_order_opt().
* [svn-r4862] ./hdf5-devel/src/H5Tconv.cRobb Matzke2002-01-251-537/+401
| | | | | | | | | | | | | | More optimizing for byte order conversion. Mostly just making code easier to follow by simplifying Duff's device coding of the loops. I also split the conversion function into two functions with different names so output from H5T debugging indicates whether the optimized or unoptimized case was invoked. 2002-01-25 10:48:54 Robb Matzke <matzke@arborea.spizella.com> * H5T_conv_order: Removed Duff's device consisting of >500 lines of code. Unrolled two loops by hand resulting in <300 lines of code which is a few percent faster and far easier to read.
* [svn-r4861] ./hdf5-devel/src/H5T.cRobb Matzke2002-01-251-0/+2
| | | | | | | | | | | | | | More optimizing for byte order conversion. Mostly just making code easier to follow by simplifying Duff's device coding of the loops. I also split the conversion function into two functions with different names so output from H5T debugging indicates whether the optimized or unoptimized case was invoked. 2002-01-25 10:47:13 Robb Matzke <matzke@arborea.spizella.com> * H5T_init_interface: Registered conversion function H5T_conv_order_opt() under two names. H5T debugging will report the conversion function as either "ibo(opt)" or "fbo(opt)".
* [svn-r4860] Frank Baker2002-01-251-3/+76
| | | | | | | | | | Purpose: Add "Release 1.5" section. Solution: Added outline for Release 1.5 API changes. And corrected a spelling error. Platforms tested: IE 5
* [svn-r4855] Purpose:Quincey Koziol2002-01-251-0/+1
| | | | Update manifest with new test file.
* [svn-r4851] Purpose:Quincey Koziol2002-01-238-79/+299
| | | | | | | | | | | | | | | | | | Bug Fix Description: When file space was returned to the file space free-list for reuse, occasionally raw data allocations which used space from the free-list would overlap with the metadata accumulator and get over-written with the cached information in the accumulator, corrupting the data. Solution: Check if the space about to be recycled on the free-list is going to be used for raw data and also overlaps with the metadata accumulator cache, avoiding using space that fits those criteria. This fixes bug #701 Platforms tested: FreeBSD 4.5 (sleipnir)
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