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* [svn-r23352] merged -r22826:23050 and -r23060:23351 from trunk into branch.Scot Breitenfeld2013-03-1573-1371/+4352
| | | | Tested: jam (gnu, intel)
* [svn-r23351] brought r23066 from trunk into branch:Scot Breitenfeld2013-03-151-0/+11
| | | | | | | r23066 | byrn | 2012-11-29 09:50:21 -0600 (Thu, 29 Nov 2012) | 2 lines HDFFV-8265: create .def file during configure, added F2003 optional functions and refactor ISO_C_BINDING usage in cmake files Tested: local cmake
* [svn-r23349] Description:Frank Baker2013-03-141-7/+6
| | | | | | | Move introduction of new function, H5DOwrite_chunk, from "Bug fixes" to "New Features" section. Consistency cleanup. Tested: Firefox
* [svn-r23343] HDFFV-8322: for valgrind testing, split-up testhdf5 tests by ↵Allen Byrne2013-03-125-4/+44
| | | | | | | | excluding and running long running tests separately. Merged from trunk. Tested: local linux
* [svn-r23342] Snapshot version 1.8 release 11 (snap12)HDF Tester2013-03-106-20/+20
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* [svn-r23339] Updated with HDFFV-8305 fix.Albert Cheng2013-03-071-1/+10
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* [svn-r23337] Bug fix: HDFFV-8305Albert Cheng2013-03-071-1/+4
| | | | | | | | Some systems, like Mac, strings inspect library files and older versions of strings maybe know newer library format, resulting in errors. Make it read the file as stdin, avoiding this problem. Tested: h5committest. all passed.
* [svn-r23334] Update CMake documentation, remove obsolete info for windows.Allen Byrne2013-03-063-667/+483
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* [svn-r23330] Merged r23325 from the trunk into the branch.Scot Breitenfeld2013-03-067-448/+616
| | | | Tested: jam (intel)
* [svn-r23328] Added the reference of the requirement of POSIX Compliance.Albert Cheng2013-03-051-6/+22
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* [svn-r23324] Snapshot version 1.8 release 11 (snap11)HDF Tester2013-03-0446-60/+60
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* [svn-r23321] Description:Quincey Koziol2013-02-279-77/+98
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge r23313 from trunk to 1.8 branch: Bring changes from Coverity branch to the trunk: r20612: Changed string functions to versions with string length to fix coverity issues 922, 942 and 943. r20614: Use HDsnprintf. --gh r20675: Fix for coverity #1714 due to the fix for #810. Use HDfree() instead of H5MM_xfree(). r20678: Repaired coverity issue #598 -- failure to check return value from a call to fstat(), or to tidy up in the event of failure. r20679: Use HDstrncpy. --gh r20681: Use HDstrncat and HDstrncpy. --gh Tested on: Mac OSX/64 10.8.2 (amazon) w/debug, C++ & FORTRAN (too minor to require h5committest)
* [svn-r23319] HDFFV-8257: szip still used even if headers are not found. ↵Allen Byrne2013-02-252-162/+204
| | | | | | Change configure to test the result of the CHECK HEADERS call before checking for the library. Tested: local linux, h5committest
* [svn-r23318] HDFFV-8311: Improve tools testing and eliminate dependency problemsAllen Byrne2013-02-257-680/+670
| | | | Tested: local linux
* [svn-r23315] Correct typo in DEPENDSAllen Byrne2013-02-251-1/+1
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* [svn-r23312] Snapshot version 1.8 release 11 (snap10)HDF Tester2013-02-256-20/+20
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* [svn-r23309] Purpose:Jonathan Kim2013-02-215-4/+14
| | | | | | | | | | | | | HDFFV-7643 - h5diff - incorrect exit-code returns for extra attribute exist Description: h5diff: Fixed to return correct exit code 1 when detect unique attribute. Prior to this fix, h5diff returned exit code 0 indicating two files are identical. Merged from HDF5 trunk r23304. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE), emu (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r23303] incorrectly addedAllen Byrne2013-02-181-42/+0
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* [svn-r23302] Remove old file namesAllen Byrne2013-02-187-104/+0
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* [svn-r23301] Allen Byrne2013-02-1875-1403/+4811
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* [svn-r23299] Updated with bug fix entry of HDFFV-8267.Albert Cheng2013-02-181-0/+5
| | | | | Since this is a testing code error that does not affect the function of the library or tools, I started a new "Testing" section for this sort of changes.
* [svn-r23298] Bug fix: HDFFV-8267Albert Cheng2013-02-181-1/+1
| | | | | | | | | | The ERROR macro had a typo of missing a separator comma. When used, it seg. fault. Added the comma back in. Fix is reviewed in Crucible HDF5-107. Tested: h5committest passed. Also tested using the ERROR macro in the Mac (Owl) platform. Before fix, it seg. fault. After fix, it prints the message as intended.
* [svn-r23292] H5DSget_scale_name changed behavior and fix noted.Scot Breitenfeld2013-02-181-0/+4
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* [svn-r23291] brought r23241 into the branch.Scot Breitenfeld2013-02-183-11/+9
| | | | | Fix for: HDFFV-7596 H5DSget_scale returns size that includes NULL termination and H5DSget_label returns size NOT including NULL termination
* [svn-r23268] Description:Frank Baker2013-02-131-1/+1
| | | | | Update copyright to 2013. Tested: Firefox
* [svn-r23265] Merge revisions 23230, 23234, and 23237 to 1.8 branchNeil Fortner2013-02-135-1/+1249
| | | | | | | | | | | | | Purpose: Implement H5Dscatter and H5Dgather Description: Adds 2 new API functions, H5Dscatter and H5Dgather. H5Dscatter retrieves data from a specified callback function and scatters it into a selection, defined by a supplied dataspace, within a supplied memory buffer. H5Dgather gathers data from a selection within a supplied memory buffer and passes it in a contiguous form to a supplied callback function. Added tests for these functions Tested: jam, ostrich, koala (h5committest); ummon; ummon (1.8)
* [svn-r23261] Brought r23235 from trunk into branch.Scot Breitenfeld2013-02-131-6/+4
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* [svn-r23246] I added the information about the new function H5DOwrite_chunk.Raymond Lu2013-02-111-1/+4
| | | | No test is needed.
* [svn-r23243] Snapshot version 1.8 release 11 (snap9)HDF Tester2013-02-116-20/+20
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* [svn-r23239] Description:Quincey Koziol2013-02-093-15/+24
| | | | | | | | | | | | | | | | | | | | | | | | Bring r23238 from trunk to 1.8 branch: Bring changes from Coverity branch to trunk: r20528: Purpose: Fix coverity issue 1372 Description: Rewrite file open secition of H5FD_stdio_open to avoid TOCTUO condition. No longer calls access, and uses a tentative open in "rb" or "rb+" mode to check for existence of the file. r20609: Use HDstrncpy and HDstrncat. --gh r20611: Use HDstrncpy. --gh Tested on: Mac OSX/64 10.8.2 (amazon) w/debug, C++ & FORTRAN (h5committest not required, already tested on branch)
* [svn-r23229] Jonathan Kim2013-02-051-1/+1
| | | | | | | | | | | | Purpose: Revert back one of the coverity updates from previous (r23220) checkin. "r20457: Coverity issue 691" in previous svn log. Only revert the change about using "STDOUT_FILENO". Description: Using "STDOUT_FILENO" caused error on Windows. On unix it's defined in <unistd.h>, but not in Windows. After a little discussion with Allen, he remembered how the similar case were handled for h5dump redirecting those streams. (in h5dump.c) However it would requires more attention to apply, so this issue is entered as a separate task in jira HDDFV-8306. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE)
* [svn-r23224] Description:Quincey Koziol2013-02-041-4/+4
| | | | | | | | | | | Bring r23223 from trunk to 1.8 branch: Revert use of snprintf() for sprintf(), as it is not supported on Windows. (And file a bug, http://jira.hdfgroup.uiuc.edu/browse/HDFFV-8302, for the general problem) Tested: Mac OSX/64 10.8.2 (amazon)
* [svn-r23222] Snapshot version 1.8 release 11 (snap8)HDF Tester2013-02-046-20/+20
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* [svn-r23220] Description:Quincey Koziol2013-02-0212-604/+623
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r23219 from trunk to 1.8 branch: Bring reviewed changes from Coverity branch back to trunk (QK & JK): r20457: Coverity issue 691: return of H5duo could be negative. Fixed by using STDOUT_FILENO and redesign parse_command_line and main to cleanup file allocations. The output_file var is null when using stdout. In cleanup do not close output_file if NULL. r20510: Initialize ufid = -1 and predicate HDclose call on ufid != -1 r20511: Purpose: Fix coverity issue 1715 Description: Free "file" and nested data on failure in H5FD_core_open. r20512: Initialize ifid = -1 and predicate HDclose call on ifid != -1 r20514: Initialize h5fid = -1 and predicate HDclose call on h5fid != -1 r20516: Added else branch to the if (ret_value < 0) check. r20522: Addressed coverity issues 930-933, 850, 836, 835, 1307. All minor potential buffer overwrite bugs, or coverity errors. Fixed by replacing strcpy and sprintf with strncpy and snprintf. r20523: fixed coverity issues 68, 1120, 1116i r20524: Check H5Z_SZIP->encoder_present < 1 assuming 0 represents absence. r20601: Purpose: Fix coverity issues 1703-1705 Description: Modified the cleanup code in test_free in accum.c to reset allocated buffers to NULL after they are freed, and modified the error cleanup code to check if these buffers are NULL before freeing them. Also fixed some unrelated warnings in accum.c. r20602: Use HDsnprintf and HDstrncat r20603: Purpose: Fix coverity issues 808-809 Description: Modified test_core in vfd.c to check the returns from malloc, and keep track of whether points and check are allocated by setting them to NULL when they are not. Added code to free points and check on error if they are not NULL. Also fixed unrelated warnings in vfd.c. r20604: Use HDstrncpy. r20605: Use HDstrncpy and HDstrncat. r20606: Purpose: Fix coverity issue 807 Description: Modified long_compact in stab.c to keep track of whether objname is allocated by setting it to NULL when it is not. Added code to free objname on error if it is not NULL. r20607: Changed string function calls to use versions that specify the string length to fix coverity issues 832 and 839. Tested on: Mac OSX/64 10.8.2 (amazon) (Too minor to require h5committest)
* [svn-r23218] Comment out new fortran functions not yet merged from trunkAllen Byrne2013-02-011-9/+9
| | | | Tested: windows
* [svn-r23214] Remove obsolete fileAllen Byrne2013-01-311-529/+0
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* [svn-r23213] HDDFV-8292 added not about change in HDF_LEGACY_NAMING option ↵Allen Byrne2013-01-311-1/+4
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* [svn-r23212] HDFFV-8292: Disable HDF_LEGACY_NAMING by defaultAllen Byrne2013-01-311-1/+1
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* [svn-r23211] Merge trunk CMake changes for minimum cmake version of 2.8.10. ↵Allen Byrne2013-01-3146-70/+162
| | | | | | This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support. Tested: local linux
* [svn-r23199] merge 23165 from trunkMohamad Chaarawi2013-01-247-69/+50
| | | | | HDFF-8203 Break H5FDmpi.h header into public and private components https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8203
* [svn-r23194] I changed the call to H5P_object_verify to H5I_object as the ↵Raymond Lu2013-01-231-3/+3
| | | | | | header file H5Iprivate.h is included but not H5Pprivate.h. Tested on koala, jam, ostrich.
* [svn-r23188] Addition of cmakehdf5.Albert Cheng2013-01-221-1/+3
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* [svn-r23187] HDFFV-8169: Binary output of String types are wrongAllen Byrne2013-01-225-13/+158
| | | | | | Merge from trunk Add testfiles. Tested: local linux
* [svn-r23186] HDFFV-8169: Binary output of String types are wrongAllen Byrne2013-01-221-1/+1
| | | | Merge from trunk
* [svn-r23182] I'm merging the changes for DECTRIS project from the trunk ↵Raymond Lu2013-01-2120-54/+2321
| | | | | | (r23162). Tested on koala, jam, ostrich.
* [svn-r23181] Snapshot version 1.8 release 11 (snap7)HDF Tester2013-01-216-20/+20
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* [svn-r23172] Updated with added cmakehdf5.Albert Cheng2013-01-161-0/+1
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* [svn-r23171] cmakehdf5 is a build command script similar to buildhdf5.Albert Cheng2013-01-161-0/+196
| | | | | | | | This has been developed and tested in the trunk branch and is now made available in the v1.8 branch. Tested: Linux (Jam), linux 64 (koala), ppc64 (ostrich), Mac (fred, duck and Owl) passed. Failed in SunOS (linew). Will fix when the new Sun is available.
* [svn-r23159] HDFFV-498: Eliminate a.exe file on cygwin configurations, ↵Allen Byrne2013-01-142-21/+7
| | | | pushed to branch from chunk so its tested on cygwin
* [svn-r23155] HDFFV-8286: changed comments from // to /* */Allen Byrne2013-01-141-2/+2
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