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* [svn-r17374] Description:Quincey Koziol2009-08-1831-1186/+1660
| | | | | | | | | | | Bring r17365 from trunk to 1.8 branch: Final merge of changes from sblock_mdc branch back to trunk. The superblock is now managed by the metadata cache. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17370] Added h5dump/h5ls display buffer resize fixed in tools library.Allen Byrne2009-08-171-0/+2
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* [svn-r17368] Snapshot version 1.8 release 3 (snap6)Larry Knox2009-08-167-22/+22
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* [svn-r17359] Description:Quincey Koziol2009-08-146-73/+102
| | | | | | | | | | Bring r17336 from trunk to 1.8 branch: Bring more changes from the file_free_space branch into the trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17354] Description:Quincey Koziol2009-08-1311-26/+54
| | | | | | | | | | | | | Bring r17351 from trunk to 1.8 branch: Clean up code (to align w/future sblock_mdc branch changes), tweak tests for [slightly] easier debugging, fix memory leak when copying chunked datasets with I/O filters, fix memory leak of free space section when it was exactly the right size to use for extending an existing block in the file. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17350] I added the simple test for h5jam and the build for h5repart.Raymond Lu2009-08-132-0/+41
| | | | Not tested yet.
* [svn-r17342] Description:Quincey Koziol2009-08-126-106/+8
| | | | | | | | | Bring r17341 from trunk to 1.8 branch: Tweaks to comments, to better align with changes on sblock_mdc branch Tested on: Just eyeballed, only tweaks to comments
* [svn-r17339] Snapshot version 1.8 release 3 (snap5)Larry Knox2009-08-128-52/+52
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* [svn-r17332] Description:Quincey Koziol2009-08-114-28/+98
| | | | | | | | | | Bring r17331 from trunk to 1.8 branch: Bring back more changes from file free space branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17327] Added the recognization of PathScale compilers. Also added the ↵Albert Cheng2009-08-111-2/+9
| | | | | | known problem of PathScale MPI failure when accessing a Panasas file system.
* [svn-r17325] Description:Quincey Koziol2009-08-116-193/+381
| | | | | | | | | | Bring r17324 from trunk to 1.8 branch: Bring more improvements/changes back from file_free_space branch Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17320] Description:Quincey Koziol2009-08-117-109/+273
| | | | | | | | | | | Bring r17319 from trunk to 1.8 branch: Bring more superblock manipulation & aggregator changes from file free space branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17317] Did some code cleanup.Albert Cheng2009-08-112-6/+8
| | | | | | | | | | t_file.c: replace the old variable, color, with a more meaningfule name of is_old. t_mpi.c: use the official mpi_file_delete, instead of remove, to delete a file in MPI environment. Tested: Only jam in parallel as changes are trivial.
* [svn-r17314] Description:Quincey Koziol2009-08-1049-276/+258
| | | | | | | | | | | | | | | | | | | | | | Bring r17313 from trunk to 1.8 branch: Bring back various minor code cleanups from the file free space branch Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17303] Description:Quincey Koziol2009-08-041-6/+4
| | | | | | | | | | | Bring r17302 from trunk to 1.8 branch: Correct errors on machines (like Windows) that don't have C99 named initializer support. Tested on: Mac OS X/32 10.5.7 (duty) Windows build (by Allen)
* [svn-r17298] Specified HDTarray_create and HDCreate as HDTarray_create2 and ↵Allen Byrne2009-08-041-2/+2
| | | | | | HDCreate2 in gent_array8 function as was done in other gent_arrayX functions. Fixes 1.6 compatibility mode argument errors. Tested: linux
* [svn-r17294] Updated for newly added files.Albert Cheng2009-08-011-0/+2
| | | | Tested by bin/chkmanifest.
* [svn-r17290] Added test targeted for bug 1520, which was fixed last week. ↵Allen Byrne2009-07-314-37/+71
| | | | | | The test generates an array datatype of ints larger than the display buffer. The bug was exposed when the buffer was reallocated. Tested: linux
* [svn-r17288] Added the two infinity tests to the windows batch script to ↵Allen Byrne2009-07-311-0/+8
| | | | match the linux test script.
* [svn-r17286] Description:Quincey Koziol2009-07-313-14/+7
| | | | | | | | | | | Bring r17284 from trunk to 1.8 branch: Remove unneccessary dest. layout information from chunked dataset copying routine. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production h5committested on trunk
* [svn-r17282] Description:Quincey Koziol2009-07-3114-110/+122
| | | | | | | | | | | Bring r17281 from trunk to 1.8 branch: Further refactoring of the dataset layout information, to separate the storage information from the layout info. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production h5committested on trunk
* [svn-r17277] Description:Quincey Koziol2009-07-3017-561/+615
| | | | | | | | Bring r17275 and r17276 from trunk to 1.8 branch. Tested on: Mac OS X/32 10.5.7 (amazon) w/debug & production (too minor to require h5committest)
* [svn-r17274] Description:Quincey Koziol2009-07-308-30/+25
| | | | | | | | | | | Bring r17272 from trunk to 1.8 branch: Finish pushing contiguous storage size from 'layout' into 'storage" data structure. Tested on: Mac OS X/32 10.5.7 (amazon) w/debug & production Too minor to require h5committest
* [svn-r17271] Description:Quincey Koziol2009-07-305-72/+71
| | | | | | | | | | | Bring r17269 from trunk to 1.8 branch: Refactor how serialized size of layout message is computed, slightly. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production FreeBSD/32 6.3 (duty) debug Too minor to require h5committest
* [svn-r17266] Description:Quincey Koziol2009-07-3026-378/+380
| | | | | | | | | Clean up various compiler warnings from IRIX64 build Tested on: Mac OS X/32 (amazon) debug & production (yes, I know it's not an IRIX64 system :-) Too minor to require h5committest
* [svn-r17265] Description:Quincey Koziol2009-07-294-30/+23
| | | | | | | | | | | | Bring r17264 from trunk to 1.8 branch: Refine how we store the chunk index address in the layout storage structure. Tested on: FreeBSD/32 6.3 (duty) debug Mac OS X/32 10.5.7 (amazon) debug & production Too minor to require h5committest
* [svn-r17262] Description:Quincey Koziol2009-07-298-127/+157
| | | | | | | | | | | Bring r17261 from trunk to 1.8 branch: Refactoring dataset layout information to segregate the constant items from the variable items (at least from a storage standpoint). Tested on: FreeBSD/32 6.3 (duty) (h5committest performed on trunk)
* [svn-r17260] add test cases for h5diffPeter Cao2009-07-291-0/+2
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* [svn-r17258] Added new file, H5Dlayout.c to project files.Allen Byrne2009-07-284-0/+12
| | | | Tested XP32 VS2005
* [svn-r17255] Fixed Bug 1563 - h5diff and InfinityPeter Cao2009-07-287-8/+45
| | | | Added test cases.
* [svn-r17253] Description:Binh-Minh Ribler2009-07-281-26/+23
| | | | | | | Fixed typos only. Platforms tested: Linux/32 2.6 (jam)
* [svn-r17251] Added H5Dlayout.c to the source and updated the test script ↵Raymond Lu2009-07-282-5/+5
| | | | | | file for h5import. Not tested yet.
* [svn-r17244] Description:Quincey Koziol2009-07-2710-327/+608
| | | | | | | | | | | Bring r17243 from trunk to 1.8 branch: Refactor how the layout message is created/written/read in the dataset's object header. Tested on: FreeBSD/32 6.3 (duty) in debug mode (change h5committested on trunk)
* [svn-r17239] Purpose: Fix bug and improve readabilityBinh-Minh Ribler2009-07-277-177/+432
| | | | | | | | | | | | | | | Description: - Revised DataSet::write to pass in correct string buffer - Added member function DataSet::getInMemDataSize() to simplify getting the dataset's data size in memory. - Added private functions for reading fixed- and variable-len string data: p_read_fixed_len and p_read_variable_len. - Added tests to write/read array of strings to datasets. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r17231] Description:Quincey Koziol2009-07-237-53/+74
| | | | | | | | | Bring r17230 back from trunk to 1.8 branch: Various minor tuneups noticed in working on the revise_chunks branch. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production full testing done on trunk before bringing change back.
* [svn-r17229] Disable a test as C script does.Raymond Lu2009-07-231-2/+2
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* [svn-r17223] Merged the fortran trunk into the branch:Scot Breitenfeld2009-07-223-5/+4
| | | | | | svn merge -r 17164:17222 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran tested: smirom (ifort, pgf90, gfortran, g95), linew
* [svn-r17219] Purpose: Improve readabilityBinh-Minh Ribler2009-07-221-0/+74
| | | | | | | | | | | | | Description: Divided Attribute::read into specific private functions for fixed- and variable-len string data: p_read_fixed_len and p_read_variable_len. Added test to write/read array of strings to attributes. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r17218] Purpose: Improve readabilityBinh-Minh Ribler2009-07-222-107/+136
| | | | | | | | | | | | | Description: Divided Attribute::read into specific private functions for fixed- and variable-len string data: p_read_fixed_len and p_read_variable_len. Added test to write/read array of strings to attributes. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r17217] Bug fix (1468)Albert Cheng2009-07-221-2/+4
| | | | | | | | | | | | | | PathScale was mistaken as the Gcc compiler such that gcc flags were added to it but PathScale did not honor many of them. (e.g. -Wvariadic-macros, -Wold-style-definition, -Winit-self, -Wvariadic-macros, -Wmissing-include-dirs, -Winit-self, -Wc++-compat) Solution: Added a pre-condition to detect pathScale compiler before Gcc is accepted. Tested: Sandia Glory where PathScale compiler is available.
* [svn-r17212] The function h5tools_str_append() incorrectly used the trio of ↵Allen Byrne2009-07-211-35/+33
| | | | | | functions: va_start(), HDvsnprintf(), and va_end(). When the boundary of the string buffer was reached and resized, the HDvsnprintf() function recalled without the other two functions in the code loop. This usage exposed bug 1520 by a user. Tested: linux
* [svn-r17208] Fixed a small bug in the fractal heap code involving filtered ↵Neil Fortner2009-07-212-1/+62
| | | | | | fractal heaps. Tested: jam, linew, smirom (h5committest)
* [svn-r17200] Changed default Gnu fortran compiler from g95 to gfortran sinceAlbert Cheng2009-07-191-2/+2
| | | | gfortran is more likely installed with gcc now.
* [svn-r17197] Changed default Gnu fortran compiler from g95 to gfortran sinceAlbert Cheng2009-07-191-2/+2
| | | | | | | | | gfortran is more likely installed with gcc now. Tested: jam and amani which covers both linux and linux64. No h5committest because this is gnu compiler specific, usually applicable to Linux.
* [svn-r17194] Enable h5copy test.Raymond Lu2009-07-161-6/+6
| | | | Not tested yet.
* [svn-r17186] The ret_value is a (H5A_t *) but FAIL was used. This typo ↵Albert Cheng2009-07-151-1/+1
| | | | | | | | | | | | caused a warning from Linux gcc but resulted in error by AIX xlc compiler. Solution: Changed FAIL to NULL. Tested: Just compiling in the AIX system.
* [svn-r17185] Fixed a typo.Raymond Lu2009-07-141-1/+1
| | | | Not tested yet.
* [svn-r17183] Fixed and updated the script files.Raymond Lu2009-07-142-20/+25
| | | | Not test yet.
* [svn-r17181] Minor fix - The way that H5Tset_size checks whether the ↵Raymond Lu2009-07-141-1/+1
| | | | | | | | datatype is a string wasn't correct. I changed it to use the macro H5T_IS_STRING. Tested on jam - simple change.
* [svn-r17180] In my last round of checkin (r17176), I forgot to clean up some ↵Raymond Lu2009-07-141-5/+0
| | | | | | | | code. I'm checking in the fix now. Tested on jam - simple change.
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