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* [svn-r22358] merge from trunkMohamad Chaarawi2012-05-1415-31/+31
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| * [svn-r22356] Snapshot version 1.9 release 117HDF Tester2012-05-1314-30/+30
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| * [svn-r22346] replace C++ style commentsAllen Byrne2012-05-071-1/+1
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* | [svn-r22357] minor editsMohamad Chaarawi2012-05-141-4/+3
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* | [svn-r22344] merge from trunkMohamad Chaarawi2012-05-0733-51/+173
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| * [svn-r22326] Snapshot version 1.9 release 116HDF Tester2012-04-2914-30/+30
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| * [svn-r22324] Description:Quincey Koziol2012-04-291-1/+1
| | | | | | | | | | | | | | | | Change name of MPE log file produced from "cpilog" (which was the name used in the example code we were referencing) to "h5log". Tested on: None, too trivial, eyeballed only...
| * [svn-r22323] Description:Jonathan Kim2012-04-271-2/+3
| | | | | | | | | | | | | | | | | | | | The ph5diff (parallel h5diff) can intermittently hang in parallel mode when comparing the two HDF5 files that contains common name objects with different object types. (HDFFV-8003) Skip only the specific test for parallel until the fix has made. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
| * [svn-r22319] Purpose:Jonathan Kim2012-04-2615-6/+129
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix for HDFFV-7998-h5diff: incorrect behavior and output for comparing symbolic dangling links without following-symlinks option Description: Fix not to check and display dangling link status without --follow-symlinks option. Berfor the fix, when comparing symbolic link to symbolic link without follow-symlinks option, h5diff followed to check if those links are dangling or not. It caused to display output incorrectly (dangling link instead of symbolic link). The fix also improved performance when comparing lots of symbolic links without the --follow-symlinks option. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
| * [svn-r22318] Use new function that combines two functions that check for ↵Allen Byrne2012-04-262-12/+4
| | | | | | | | | | | | vlen types. Based on code used in h5ls. Tested: local linux
| * [svn-r22312] Description:Quincey Koziol2012-04-231-0/+1
| | | | | | | | | | | | | | | | Correct error reported by user (Martin Otte) where we weren't using realloc'ed buffer in MPI datatype code. Tested on: Mac OSX/64 10.7.3 (amazon) w/parallel
| * [svn-r22311] Snapshot version 1.9 release 115HDF Tester2012-04-2214-30/+30
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| * [svn-r22300] Purpose:Jonathan Kim2012-04-192-0/+5
| | | | | | | | | | | | | | | | | | | | | | Fix for HDFFV-8001 - h5unjam: segfault when used -V (show version) option Description: h5unjam has an option '-V' to display version information. "h5unjam -V" caused segfulat for 1.8.9 pre-release. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* | [svn-r22306] add a request id to each of the VOL callbacks and update the nativeMohamad Chaarawi2012-04-2019-375/+379
| | | | | | | | plugin to pass a NULL request
* | [svn-r22299] add the vol files to cmakeMohamad Chaarawi2012-04-191-0/+15
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* | [svn-r22298] fix an error in H5Dget_offsetMohamad Chaarawi2012-04-195-97/+141
| | | | | | | | update the H5R routines to use the VOL
* | [svn-r22297] merge from trunkMohamad Chaarawi2012-04-1873-2771/+3036
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| * [svn-r22287] Description:Quincey Koziol2012-04-1647-2701/+2732
| | | | | | | | | | | | | | | | Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
| * [svn-r22286] Snapshot version 1.9 release 114HDF Tester2012-04-1514-30/+30
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| * [svn-r22277] Purpose:Jonathan Kim2012-04-1111-23/+235
| | | | | | | | | | | | | | | | | | | | | | | | Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions" Description: Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims. Also took care of converting to contiguous and compact from the dataset. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
| * [svn-r22275] Clear up examples vs applications instances and add minimum file.inactive/H5OcompareAllen Byrne2012-04-111-14/+35
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* | [svn-r22292] remove unnecessary lookup for object locations into VOLMohamad Chaarawi2012-04-179-24/+74
| | | | | | | | | | add a public API routine to set a user defined VOL driver some fixes to allow vol plugins to be created and used outside the library
* | [svn-r22285] make H5Ocopy use VOLMohamad Chaarawi2012-04-137-54/+153
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* | [svn-r22283] H5Lget routines through VOLMohamad Chaarawi2012-04-1211-520/+718
| | | | | | | | | | | | | | | | H5G and H5A deprecated routines through VOL H5A exists(_by_name), delete_by_idx, rename through attr generic callbacks H5O incr/decr_ref_count set_comment(_by_name) exists(by_name) through a generic Object cb remove the attr generic callback and use the object generic callback instead add the usual workarounds for named datatypes in test code
* | [svn-r22279] implement the attribute delete VOL callbackMohamad Chaarawi2012-04-116-41/+101
| | | | | | | | use the VOL get_space instead of the API routine in vlen_get_size
* | [svn-r22278] make get_vfd go through a generic file callbackMohamad Chaarawi2012-04-118-2018/+2150
| | | | | | | | rearrange routines alphabetically
* | [svn-r22274] merge from trunk, resolve conflictsMohamad Chaarawi2012-04-10254-2094/+12293
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| * [svn-r22263] Use correct index for inserting null terminatorAllen Byrne2012-04-091-9/+9
| | | | | | | | Tested: windows under debug
| * [svn-r22257] Snapshot version 1.9 release 113HDF Tester2012-04-0814-29/+29
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| * [svn-r22247] Added new files and tests to CMakeLists.txtAllen Byrne2012-04-043-7/+67
| | | | | | | | Tested: local linux
| * [svn-r22246] Changed code comments for h5ltpath_valid_fScot Breitenfeld2012-04-041-1/+1
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| * [svn-r22244] Description:Quincey Koziol2012-04-031-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Correct use of deprecated API routines in test routine. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, in production mode Mac OS X/32 10.6.8 (amazon) in debug mode Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
| * [svn-r22243] Updated the comments for robodoc inclusion and changed spacing ↵Scot Breitenfeld2012-04-031-69/+68
| | | | | | | | | | | | formatting in the source headers, cosmetic changes only.
| * [svn-r22242] Issue 7934 - The data sieve buffer size was for all the ↵Raymond Lu2012-04-023-7/+33
| | | | | | | | | | | | | | | | | | | | datasets in the file. It could waste memory if any dataset size is smaller than the sieve buffer size. Now the library picks the smaller one between the dataset size and the sieve buffer size from the file access property. Tested on jam, koala, and ostrich.
| * [svn-r22240] Description:Quincey Koziol2012-04-021-2/+2
| | | | | | | | Update comment about metadata block size test.
| * [svn-r22238] Added comment to explain why FNAME4 is used and cautioned other ↵Albert Cheng2012-04-021-0/+2
| | | | | | | | | | | | files may not work.
| * [svn-r22236] Description:Quincey Koziol2012-04-021-1/+1
| | | | | | | | | | | | | | Switch 'snprintf' -> 'HDsnprintf' Tested on: (eyeballed only, very simple)
| * [svn-r22235] Purpose: Fixed bugs HDFFV-2761 & HDFFV-7852Binh-Minh Ribler2012-04-0219-185/+177
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Replaced PredType::NotAtexit() with PredType::AtExit(H5CPP_EXITED); and used PredType::AtExit as a flag to detect when all predefined types have been destroyed. Then, H5close will be called to terminate the library after its being re-initiated when the PredType destructors were activated. This change removed the memory leaks shown by the user's sample program. - Added H5CPP_EXITED for PredType::AtExit to use as a flag - Updated some inaccurate comments - Removed stream functions from FileAccPropList - Replaced H5_VMS with appropriate macro in H5IdComponent.cpp - Corrected many URLs (hdfgroup vs. ncsa) in comments - Replaced std::string with H5std_string in comments Platforms tested: Linux/32 2.6 (jam) Linux/64 2.6 (amani) SunOS 5.10 (linew)
| * [svn-r22233] Description:Quincey Koziol2012-04-0113-165/+616
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Correct several errors in fractal heap code: root indirect block was getting pinned/protected more than once, "single" free space sections weren't getting "re-parented" correctly when the heap transitioned between having a root indirect block and a root direct block, and several related issues. Also cleaned up some warnings in library/tests. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Mac OSX/64 10.7.3 (amazon) w/debug
| * [svn-r22229] Description:Quincey Koziol2012-04-014-22/+28
| | | | | | | | | | | | | | | | | | | | | | | | | | Add 'H5O_mcdt_search_cb_t' to bin/trace script and re-run the bin/reconfigure script. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
| * [svn-r22224] Description:Quincey Koziol2012-04-012-14/+19
| | | | | | | | | | | | | | | | | | Clean up a few warnings and use constant values for free-space parameters for the metadata block size test. Tested on: Linux/64 2.6.18 (koala) w/production & szip (h5committested also)
| * [svn-r22222] Description:Quincey Koziol2012-04-011-1/+75
| | | | | | | | | | | | | | Update GCC compiler flags for new 4.7.0 release. Tested on: Mac OSX/64 10.7.3 (amazon) w/gcc 4.7.0
| * [svn-r22221] Description:Quincey Koziol2012-04-011-4/+4
| | | | | | | | | | | | | | | | Small code cleanup while tracking down h5repack issue. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest coming up)
| * [svn-r22220] Feature: HDFFV-7981Albert Cheng2012-03-311-0/+20
| | | | | | | | | | | | Added test to verify h5repack --metadata option produces bigger size file. Tested: h5committest (koala, jam, ostrich).
| * [svn-r22219] Description:Quincey Koziol2012-03-3143-331/+4260
| | | | | | | | | | | | | | | | Merge "file image" changes from feature branch back to trunk. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest upcoming)
| * [svn-r22214] Feature: HDFFV-7981Albert Cheng2012-03-301-6/+54
| | | | | | | | | | | | Added test to verify h5repack --metadata option produces bigger size file. Tested: h5committest (koala, jam, ostrich).
| * [svn-r22211] STDIO VFD fixes (HDFFV-7917). Mainly Windows correctness ↵Dana Robinson2012-03-301-328/+343
| | | | | | | | | | | | | | | | | | | | | | issues (propagated from the SEC2 VFD and the old Windows VFD) and issues where large files are accessed. Tested on: 64-bit Mac OS-X 64-bit Windows 7 jam koala ostrich
| * [svn-r22202] Add extra search termAllen Byrne2012-03-291-2/+2
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| * [svn-r22199] Correct typoAllen Byrne2012-03-291-5/+5
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| * [svn-r22198] Update MINGW configuration (MinGW is Windows except for some ↵Allen Byrne2012-03-292-19/+19
| | | | | | | | issues)