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changed variable name for list containing all chunks in the I/O
operation
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Correct comment and error message about retrieving the threshold for
performing either Linked-chunk or Multi-chunk I/O
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ssh://bitbucket.hdfgroup.org:7999/~jhenderson/hdf5.git into feature/parallel_filters
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feature/parallel_filters
* commit 'b359e8f1a2349d177e70d34560d0a089ce37c4c8':
Description: Removed "#ifndef H5_NO_DEPRECATED_SYMBOLS" in file space tests, because the wrappers only use the latest functions now. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
Purpose: Add new C++ wrappers Description: Because H5Pset_file_space and H5Pget_file_space are deprecated, changed to make wrappers for the new functions instead: H5Ps/get_file_space_strategy H5Ps/get_file_space_page_size
Description: Fixed typos. Platforms tested: Linux/64 (jelly)
Description: Deprecating versions of PropList::setProperty that have arguments that miss "const" Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
Description: Miscellaneous clean-up: format and comments Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
Add toolset option to cmake configure
Update cmake pubconf to match autotools and add strtoll checks
Switch from HDatoll to HDstrtoll, for Windows compatibility.
output_filter.sh: Comment added to address HDFFV-8270. The sample ontput in the file's comments are not up-to-date with the scripts in the file that remove output unique to certain systems when running test scripts. This output doesn't match expected output files for the tests, causing them to fail. Ther output_filter.sh file removes such output. Currently we don't have access to these systems to update the comments.
Correct double sourcedir name on copied datafiles.
HDFFV-10138 Merge app framework to examples
Final merge of page buffering branch to develop
Purpose: Add new C++ wrappers Description: Added wrappers for H5Iis_valid, H5Ps/get_nlinks, H5Tget_create_plist, H5Oopen, H5Oclose and H5Pset_virtual
Bring changes to I/O parameters from page_buffering branch.
Merge in reentrency changes to "make space in cache" from page_buffering branch.
Minor cleanups and bring over "prefetched dirty" fixes for entries loaded from a cache image.
Remove some usage of "prefetched_dirty" flag (which hasn't been merged from the page_buffering branch yet. Also, bring over improvements to flush candidate entries for parallel code.
Align with incoming page buffering changes: minor cleanups, centralize removing entries from collective metadata read list
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to develop
* commit 'b6cb20d608aa6f5d9a7d825c1f38cfcea6ff5234':
Description: Removed "#ifndef H5_NO_DEPRECATED_SYMBOLS" in file space tests, because the wrappers only use the latest functions now. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
Purpose: Add new C++ wrappers Description: Because H5Pset_file_space and H5Pget_file_space are deprecated, changed to make wrappers for the new functions instead: H5Ps/get_file_space_strategy H5Ps/get_file_space_page_size
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Removed "#ifndef H5_NO_DEPRECATED_SYMBOLS" in file space tests,
because the wrappers only use the latest functions now.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
Because H5Pset_file_space and H5Pget_file_space are deprecated, changed
to make wrappers for the new functions instead:
H5Ps/get_file_space_strategy
H5Ps/get_file_space_page_size
New wrappers in FileCreatPropList:
// Sets the strategy and the threshold value that the library will
// will employ in managing file space.
void setFileSpaceStrategy(H5F_fspace_strategy_t strategy, hbool_t persist, hsize_t threshold) const;
// Returns the strategy that the library uses in managing file space.
void getFileSpaceStrategy(H5F_fspace_strategy_t& strategy, hbool_t& persist, hsize_t& threshold) const;
// Sets the file space page size for paged aggregation.
void setFileSpacePagesize(hsize_t fsp_psize) const;
// Returns the threshold value that the library uses in tracking free
// space sections.
hsize_t getFileSpacePagesize() const;
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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to develop
* commit '5acc8b9e169e6416e353433791321bc9c4e7b725':
Description: Fixed typos. Platforms tested: Linux/64 (jelly)
Description: Deprecating versions of PropList::setProperty that have arguments that miss "const" Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
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Fixed typos.
Platforms tested:
Linux/64 (jelly)
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https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp2 into develop
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to develop
* commit '50ac3cd6ecc37bb2196bcebe8a202711e315759d':
Description: Miscellaneous clean-up: format and comments Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
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* commit '4c6f538770f92a09c6be46e44de056ad7ec68426':
Add toolset option to cmake configure
Update cmake pubconf to match autotools and add strtoll checks
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Deprecating versions of PropList::setProperty that have arguments that
miss "const"
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1010test)
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Miscellaneous clean-up: format and comments
Platforms tested:
Linux/64 (jelly)
Darwin (osx1010test)
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to develop
* commit '98090fe3b08a0ff85ae9bc93218a14017a6f37fe':
Purpose: Add new C++ wrappers Description: Added wrappers for H5Iis_valid, H5Ps/get_nlinks, H5Tget_create_plist, H5Oopen, H5Oclose and H5Pset_virtual
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https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp2 into develop
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Description:
Added wrappers for H5Iis_valid, H5Ps/get_nlinks, H5Tget_create_plist,
H5Oopen, H5Oclose and H5Pset_virtual
// Checks if the given ID is valid.
static bool isValid(hid_t an_id);
// Sets the number of soft or user-defined links that can be
// traversed before a failure occurs.
void setNumLinks(size_t nlinks) const;
// Gets the number of soft or user-defined link traversals allowed
size_t getNumLinks() const;
// Returns a copy of the creation property list of a datatype.
PropList getCreatePlist() const;
// Opens an object within a group or a file, i.e., root group.
hid_t getObjId(const char* name,...);
hid_t getObjId(const H5std_string& name,...);
// Closes an object opened by getObjId().
void closeObjId(hid_t obj_id) const;
// Maps elements of a virtual dataset to elements of the source dataset.
void setVirtual(const DataSpace& vspace, const char *src_fname,...);
void setVirtual(const DataSpace& vspace, const H5std_string src_fname,...);
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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* commit 'f21374c455b713df8e866d0ebfddece7874b0f47':
HDFFV-10138 Merge app framework to examples
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* commit '887783eb0e9a1787c77092ed53a7737ad4aaac3a':
Switch from HDatoll to HDstrtoll, for Windows compatibility.
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* commit 'a16d142f80630b11ac45c0bcf00ee2ea5b88f08e':
Switch from HDatoll to HDstrtoll, for Windows compatibility.
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* commit 'cee9624b0febcb60a7b2699262104e9eaf20313d':
output_filter.sh: Comment added to address HDFFV-8270. The sample ontput in the file's comments are not up-to-date with the scripts in the file that remove output unique to certain systems when running test scripts. This output doesn't match expected output files for the tests, causing them to fail. Ther output_filter.sh file removes such output. Currently we don't have access to these systems to update the comments.
Correct double sourcedir name on copied datafiles.
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* commit '98567db19290dc07cc86efae720b0dc457ae9f65':
output_filter.sh: Comment added to address HDFFV-8270. The sample ontput in the file's comments are not up-to-date with the scripts in the file that remove output unique to certain systems when running test scripts. This output doesn't match expected output files for the tests, causing them to fail. Ther output_filter.sh file removes such output. Currently we don't have access to these systems to update the comments.
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Comment added to address HDFFV-8270. The sample ontput in the
file's comments are not up-to-date with the scripts in the file
that remove output unique to certain systems when running test
scripts. This output doesn't match expected output files for
the tests, causing them to fail. Ther output_filter.sh file
removes such output. Currently we don't have access to these
systems to update the comments.
testflushrefresh.sh.in:
flushrefresh and other SWMR tests have been failing
occasionally but regularly since bringing them to the develop
branch. The logs and debugging point to unexpected deletion of
signal files as the point of failure, and John Mainzer suggests
that two such tests running simultaneously in the same directory
may lead to the operating system deleting the other test's
signal file. Running the flushrefresh test in its own directory
seems to solve the problem.
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* commit 'ecfdadfb1eff5ae8f18269e33dce3856e22f4bd7':
Correct double sourcedir name on copied datafiles.
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* commit 'd0aeefd6455d6877afd934e238362636a86e4b42':
Final merge of page buffering branch to develop
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* commit '0313cbb91d974b153dbe8747d193ac3c619eea3b':
Final merge of page buffering branch to develop
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* commit '4fad103187db9095afc8eab90b5f5544feb1d19b':
Bring changes to I/O parameters from page_buffering branch.
Merge in reentrency changes to "make space in cache" from page_buffering branch.
Minor cleanups and bring over "prefetched dirty" fixes for entries loaded from a cache image.
Remove some usage of "prefetched_dirty" flag (which hasn't been merged from the page_buffering branch yet. Also, bring over improvements to flush candidate entries for parallel code.
Align with incoming page buffering changes: minor cleanups, centralize removing entries from collective metadata read list
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a cache image.
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page_buffering branch yet. Also, bring over improvements to flush candidate
entries for parallel code.
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merge_page_buffering_07
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merge_page_buffering_07
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merge_page_buffering_07
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entries from collective metadata read list
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feature/parallel_filters
* commit '56e5b4ed05fb3bad51c226ec5b567871a45e0bce': (112 commits)
updated AM_SILENT_RULES syntax
Added a check for AM_SILENT_RULES before enabling it.
Fix alignment
Fix vds tests
Correct result code for strings test
Add extension to filename
HDFFV-10128 fix string compare and add tests
Description: Only format changes: mostly tabs vs. spaces Platforms tested: Linux/64 (jelly) - very minor
Lowercase math and set CMake commands
Added "flush" and "refresh" to testflushrefresh.sh error output so it's easier to see where errors in the script occur.
Misc. small cleanups to sync against incoming page buffering changes.
Update CMake formatting
Update CMake files and formatting
Normalize against incoming page buffering changes.
HDFFV-10120 verify nozlib checking with tools tests
cmake non-code typo
Correct issues from pull request reviews.
Corrected version of 4b5e05c084f93c35dae946c2c9e814d565a613b0: Fix some more signed -> unsigned value issues with cache data structures, also misc. style cleanups. All to align w/incoming page_buffering changes.
Revert "Fix some more signed -> unsigned value issues with cache data structures, also"
Added virtual to list
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* commit 'd297ee6e82adbbbbca168997953cdf0c5a3922eb':
updated AM_SILENT_RULES syntax
Added a check for AM_SILENT_RULES before enabling it.
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* commit '71fa3dc480d9d6b1ea00c4f10e9ee0ec10c2c8d9':
Fix alignment
Fix vds tests
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* commit '7942414b24288d497d4878754319dffa24bbec11':
Description: Only format changes: mostly tabs vs. spaces Platforms tested: Linux/64 (jelly) - very minor
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develop
Replaces tabs with spaces.
* commit '8f5a1f43d0cf527488be2b2805bac2b6c86b8c66':
Description: Only format changes: mostly tabs vs. spaces Platforms tested: Linux/64 (jelly) - very minor
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