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* [svn-r14402] Description:Quincey Koziol2008-01-1352-44/+382
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add work-around to allow reading files that were produced with a buggy earlier version of the library, which could create objects with the wrong object header message count. There is now a configure flag "--enable-strict-format-checks" which triggers a failure on reading a file with this sort of corruption (when enabled) and allows the object to be read (when disabled). The default value for the "strict-format-checks" flag is yes when the "debug" flag is enabled and no when the "debug" flag is disabled. Note that if strict format checks are disabled (allowing objects with this particular kind of corruption to be read) and the file is opened with write access, the library will re-write the object header for the corrupt object with the correct # of object header messages. This closes bugzilla bug #1010. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14399] Maintenance: fixed some typos.Elena Pourmal2008-01-111-5/+6
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* [svn-r14398] Bug fix: Fixed installation instructions for the OpenVMS systemElena Pourmal2008-01-111-0/+1
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* [svn-r14397] partial fix for the block selection subsetting bug (2D case ok)Pedro Vicente Nunes2008-01-101-3/+49
| | | | tested: windows, linux
* [svn-r14396] Maintenance: VMS doesn't like multiple "." in the file names; ↵Elena Pourmal2008-01-101-2/+2
| | | | | | we will need to rename tar ball for the VMS user; used generic name <source> to specify the tar ball and top directory names for now.
* [svn-r14395] Maintenance: Updated installation instructions for VMS system.Elena Pourmal2008-01-101-63/+47
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* [svn-r14394] Maintenance on VMS: cleaned up the scripts to avoid the ↵Elena Pourmal2008-01-104-49/+61
| | | | | | | | annoying warning messages and to delete temporary files Platforms tested: VMS server
* [svn-r14393] Changed the way that the file name string is represented.Raymond Lu2008-01-101-2/+4
| | | | Tested on smirom.
* [svn-r14390] Maintenance for VMS system before the final release:Elena Pourmal2008-01-0915-112/+175
| | | | | | | | | Updated utilities test scripts to make output more legible; fixed some typos. Added four new expected output files to avoid false negative reports for the h5dump tests (for ones that expect to have error report in them). Updated MANIFEST to reflect the changes. Platforms tested: VMS server (more testing is on the way)
* [svn-r14389] Changed some test cases to use H5Sselect_elements instead of ↵Raymond Lu2008-01-091-12/+22
| | | | | | | | H5Sselect_hyperslab for test purpose. Tested on smirom only. Simple changes.
* [svn-r14385] This checkin completely modified the test for the coordinate ↵Raymond Lu2008-01-093-330/+423
| | | | | | | | calculation of dataspace selection. It covers many cases. Tested on smirom, kagiso, and linew.
* [svn-r14384] new file with output regarding the new binary filePedro Vicente Nunes2008-01-081-0/+2
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* [svn-r14383] new binary file: with double dataset with NaN valuesPedro Vicente Nunes2008-01-081-0/+0
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* [svn-r14382] bug fix: enable NaN detection for double typePedro Vicente Nunes2008-01-082-1953/+2249
| | | | | | note: RFC at http://www.hdfgroup.uiuc.edu/RFC/HDF5/NaNs_and_HDF5/ tested: windows, linux, solaris
* [svn-r14381] comment typo fixPedro Vicente Nunes2008-01-071-1/+1
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* [svn-r14380] Eliminate old code not used and that was replaced (command line)Pedro Vicente Nunes2008-01-071-308/+73
| | | | tested: windows, linux
* [svn-r14379] add check of some values for the nbit and scale offest filters ↵Pedro Vicente Nunes2008-01-074-12/+20
| | | | | | | | on the h5repack verify function note: some sybols were made public tested: windows, linux
* [svn-r14378] Maintenance: Cleaned up the test script and add reporting of ↵Elena Pourmal2008-01-071-3/+11
| | | | | | false negative tests. Platforms tested: VMS server
* [svn-r14377] Maintenance: Added Ray's new test tcoords.c to the build script; Elena Pourmal2008-01-063-2/+12
| | | | | | modified h5import test script to cleanup the files after the test; modified "master" building script to run tools tests. Platforms tested: VMS server (not quite done yet)
* [svn-r14376] moved a couple more private filter symbols to the public side, ↵Pedro Vicente Nunes2008-01-044-6/+10
| | | | | | needed by h5repack tested: windows, linux
* [svn-r14375] Update copyright to 2008.Frank Baker2008-01-041-1/+1
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* [svn-r14374] Description:Quincey Koziol2008-01-045-7/+34
| | | | | | | | | Updates from running bin/reconfigure on recent changes, in preparation for making private snapshot. Also updated tracing information for recent types added to public API routines. Tested on: Linux/32 2.6.x (kagiso)
* [svn-r14373] Maintenance: Fixed the script to use the correct VMS file name ↵Elena Pourmal2008-01-041-13/+13
| | | | | | | | when file doesn't have an extension. Platforms tested: VMS server
* [svn-r14372] Description:Quincey Koziol2008-01-036-59/+60
| | | | | | | | Further cleanups & simplifications to prepare for next phase of work. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.5.1 (amazon)
* [svn-r14371] Description:Quincey Koziol2008-01-031-80/+92
| | | | | | | Code cleanups in preparation for larger changes. Tested on: Mac OS X/32 (amazon)
* [svn-r14370] Maintenance: more cleanup of the h5import scriptElena Pourmal2008-01-031-15/+16
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* [svn-r14369] Maintenance: Cleaned up the h5import script and fixed some ↵Elena Pourmal2008-01-031-19/+32
| | | | | | potential errors. Platforms tested: not yet, waiting for the server to come back
* [svn-r14368] clean code and reshufle functions between modules, remove ↵Pedro Vicente Nunes2008-01-034-198/+141
| | | | | | unused functions tested: windows, linux
* [svn-r14367] Maintenance for VMS system: updated testscript for h5import ↵Elena Pourmal2008-01-032-31/+27
| | | | | | | (need more work) and added new source file to the librray compilation script. Platforms tested: not yet since VMS server went down; this change doesn't affect any other platform
* [svn-r14366] comments grammar correctionPedro Vicente Nunes2008-01-031-6/+1
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* [svn-r14365] Add szip filter check of client data values for has_filters.Pedro Vicente Nunes2008-01-033-20/+19
| | | | | | NOTE: szip client symbols were made public Tested: windows, linux, solaris
* [svn-r14364] Description:Quincey Koziol2008-01-033-65/+83
| | | | | | | | | | | | | | | | | | | Avoid creating free space manager for fractal heap when just performing queries. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14363] Description:Quincey Koziol2008-01-036-1659/+1879
| | | | | | | | Refactor file space allocation routines into separate source module. Tested on: FreeBSD/32 6.2 (duty) in debug mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14362] Description:Quincey Koziol2008-01-0320-69/+163
| | | | | | | | | | | | | | | | | | Switched from "H5P[gs]et_latest_format" to "H5P[gs]et_format_bounds". Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14361] add a warning message in case a dataset cannot be created with ↵Pedro Vicente Nunes2008-01-021-1/+7
| | | | | | modified DCPL tested: linux
* [svn-r14360] New function has_filters (replace has_filters for each object ↵Pedro Vicente Nunes2008-01-024-334/+102
| | | | | | | | | and for global filters): verify if all requested filters in the array FILTER obtained from user input are present in the property list PID obtained from the output file. All the filter comparison of client data values is done here instead of the previous filtcmp TO DO: szip, nbit and scale offset NOTE: the symbol H5Z_SHUFFLE_TOTAL_NPARMS was made public Tested: windows, teragrid with icc 8.1, linux (kagiso), solaris (linew)
* [svn-r14359] Description:Quincey Koziol2007-12-242-7/+7
| | | | | | | | | Corrected a compiler warning in the local heap code. Fixed the shared message flag symbols from the recent switchover. Tested on: FreeBSD 6.2/32 (duty)
* [svn-r14358] Description:Quincey Koziol2007-12-237-87/+83
| | | | | | | | | | | | | | | | | | | Tweak the constants for the shared message flags to be equal to the other flags useds for the underlying messages. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14357] Description:Quincey Koziol2007-12-222-10/+44
| | | | | | | | | | | | | | | | | | | | Add a hack to the local heap code to resize the metadata cache when the heap block will be too large for the cache. This should be removed when the metadata cache handles "too large" object insertions (or resizes) correctly. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14356] Description:Quincey Koziol2007-12-203-77/+58
| | | | | | | | | | | | | | | | | | | Refactor work for bug #956 to simplify a bit and to cover some corner cases. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14355] uncomment previously commented code regarding nbit and ↵Pedro Vicente Nunes2007-12-202-57/+92
| | | | | | | | scale-offset filter adding changed the logic of the filter compare function to first compare filter type, then filter client data values (separate here in each individual case, since some filters return private filter values. Todo: handle the nbit and scale-offest cases) tested: windows, linux
* [svn-r14354] Bug fix for #956 where the element coordinates went wrong for ↵Raymond Lu2007-12-209-4/+471
| | | | | | | | dataspace selection. Added a test for it, too. This round of checkin isn't well tarnished yet. I'll come back to work on Jan. 8. I'll revise it then. Tested it on kagiso, smirom, linew.
* [svn-r14353] Description:Quincey Koziol2007-12-2014-563/+775
| | | | | | | | | | | | | | | | | | | | | | | | | - Add hash value for skip list string types, to reduce # of string comparisons. - Fixed bug with metadata/small data block aggregator adding size == 0 block into file free space list. - Refactored metadata/small data block aggregator code into single set of common routines. - Changed block aggregator code to be smarter about releasing space in the 'other' block when the 'other' block has aggregated enough data. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14352] Maintenance: Fixed a typo in the build scriptElena Pourmal2007-12-181-1/+1
| | | | Platforms tested: VMS server
* [svn-r14350] Maintenance for VMS system: brought up-to-date h5repack testing ↵Elena Pourmal2007-12-173-55/+70
| | | | | | | | script and updated build file Platforms testeda VMS server:
* [svn-r14346] New feature: has_filters_obj function that checks if filters ↵Pedro Vicente Nunes2007-12-145-18/+134
| | | | | | | | | | | | | | | | | | | | match for each individual dataset Following the new feature of h5repack to allow multiple filters for all datasets and the new function has_filters that checks if the repacked file has all the filters requested, I added a new function has_filters_obj that does the same for each dataset. The previous function that checked this only ckecked if the user input filters were in the output dataset. This new function does this but checks if the filters are exactly the same. Currently the behavior of h5repack is to delete all filters that are present in the input file (dataset) and replace them with the requested ones, so they must match exactly. We might consider adding other logical operations, like keep the existing ones. Additionally , the function also checks if the filter parameters match. While doing this I noticed that for the shuffle filter , the values returned do not match and also the same for the N-bit and scale-offset The new function that checks for the filter values fails then, and so I commented the h5repack tests that do this for the N-bit and scale-offset filter (previously for the same bug on the shuffle filter I added special code on the compare filter function but this is temporary until I find the issue) tested: windows, linux, solaris
* [svn-r14345] substituted the symbol CD_VALUES , number of filter client data ↵Pedro Vicente Nunes2007-12-143-6/+8
| | | | | | | | values, for H5Z_COMMON_CD_VALUES that is defined in the library tested: windows, linux, solaris
* [svn-r14344] Maintenance on VMS system: updated testscript for h5diff and ↵Elena Pourmal2007-12-133-299/+73
| | | | | | removed obsolete command file Platforms tested: VMS server
* [svn-r14343] Maintenance for VMS: added more tests to the command file for ↵Elena Pourmal2007-12-133-206/+86
| | | | | | | | h5dump testing modified the file to save output into h5dump_output.txt file removed obsolete test script file check.com update MANIFEST to refelect the change
* [svn-r14342] change the implementation of H5IMmake_image_8bit to use a 2D ↵Pedro Vicente Nunes2007-12-134-10/+1
| | | | | | dataset tested: windows, linux solaris w/fortran
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