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* [svn-r14442] Modified metadata cache to adapt more quickly to the insertion of aJohn Mainzer2008-01-1814-78/+3071
| | | | | | | | | | | | | | | | | large entry, or to a large increases in the size of an existing entry. This required some additions to the cache configuration structure, and thus will require changes in the metadata cache documentation. The basic idea is to monitor the size of entries as they are loaded, inserted, or increased in size. If the size of the entry (or increase) exceeds some user selected fraction of the size of the cache, increase the size of the cache. Note that this fix was designed quickly -- while it deals with the use case that exposed the problem, we may have to revisit the issue later. Tested serial and parallel on Phoenix, and h5committest.
* [svn-r14439] more features and bugsPedro Vicente Nunes2008-01-161-0/+8
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* [svn-r14438] add mention to bugs fixedPedro Vicente Nunes2008-01-161-6/+10
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* [svn-r14437] bug fix for h5dump subsetting (deal with blocks)and new test runsPedro Vicente Nunes2008-01-167-79/+166
| | | | | | | | | | | | | | | | | | | | | | | | | add a check for block overlap after the command line parsing * Algorithm * * In a inner loop, the parameters from SSET are translated into temporary * variables so that 1 row is printed at a time (getting the coordinate indices * at each row). * We define the stride, count and block to be 1 in the row dimension to achieve * this and advance until all points are printed. * An outer loop for cases where dimensionality is greater than 2D is made. * In each iteration, the 2D block is displayed in the inner loop. The remaining * slower dimensions above the first 2 are incremented one at a time in the outer loop * * The element position is obtained from the matrix according to: * Given an index I(z,y,x) its position from the beginning of an array * of sizes A(size_z, size_y,size_x) is given by * Position of I(z,y,x) = index_z * size_y * size_x * + index_y * size_x * + index_x * tested: windows, linux
* [svn-r14436] Purpose: Fix minor bug in VS.NET project fileScott Wegner2008-01-161-1/+1
| | | | | | | | Description: It seems that during the conversion, one project (h52gifdll) began using the wrong Runtime-library settings. This was causing Link errors for only the Release DLL build. This has been fixed now. Tested: VS.NET on WinXP
* [svn-r14435] Purpose: Update RELEASE.txt for WindowsScott Wegner2008-01-161-19/+16
| | | | | Description: Updated level of support for MinGW, Windows XP x64 and Windows Vista. Also noted that VS6 is no longer supported.
* [svn-r14434] Purpose: Minor updates to compiler-specific Windows documentationScott Wegner2008-01-162-26/+6
| | | | | Description: After doing a quick review of the documentation, I found a few points that had been overlooked before.
* [svn-r14433] Purpose: Fix reference in the Windows batch-build scriptScott Wegner2008-01-161-24/+1
| | | | | Description: In the Windows command line build script, there was a reference to the "typegen" project, which generates h5detect before HDF5 is built. Now, we integrate h5detect into the overall build process, and typegen has been removed. This checkin removes the reference in the batch script. This fixes bugzilla bug 1021.
* [svn-r14432] Purpose: Update Windows documentation concerning VS6Scott Wegner2008-01-164-173/+7
| | | | | Details: We no longer support Visual Studio 6.0, so we note it in the documentation. Also, updated the path references in VS.NET documentation
* [svn-r14431] Purpose: Fix MANIFESTScott Wegner2008-01-161-2/+0
| | | | | | | | Description: Minor edit to MANIFEST, delete a few entries I missed last time. This brings it up to date. Tested: chkmanifest on smirom
* [svn-r14430] Purpose: Remove stray references to Fortran projects in VS.NETScott Wegner2008-01-161-542/+192
| | | | | Description: We no longer have support for Fortran in VS.NET, so we remove references to any Fortran projects.
* [svn-r14429] Purpose: Initial MANIFEST updateScott Wegner2008-01-161-269/+207
| | | | | Description: Update the MANIFEST for the files I've just addeed/removed.
* [svn-r14428] Purpose: Rename vs6 folder to vnetScott Wegner2008-01-16204-0/+0
| | | | | Description: We are removing VS6 support in HDF5 1.8, so our windows_vs6 folder now becomes windows_vnet.
* [svn-r14427] Purpose: First step in removing VS6 support in final HDF5 1.8Scott Wegner2008-01-16470-45253/+65158
| | | | | Description: This is the first step in a series of commits that will remove VS6 support. In doing so, we'll need to convert our projects to VS.NET format, to maintain VS.NET C support. In this commit, I've converted all VS6 projects, and removed any Fortran remnants. I haven't updated the MANIFEST because I have a few more add/deletes, but I'll do that soon.
* [svn-r14426] Purpose: Update Windows h5dump test scriptScott Wegner2008-01-161-5/+10
| | | | | | | | Description: There were a number of updates to the main h5dump test script. This checkin brings those edits to the Windows script as well. Tested: VS2005 w/ WinXP
* [svn-r14424] Description:Quincey Koziol2008-01-161-1/+1
| | | | | | | Correct typo in C++ example program Tested on: Mac OS X/32 10.5.1 (amazon)
* [svn-r14422] Description:Quincey Koziol2008-01-151-3/+2
| | | | | | | Clean up thread safety code a bit more... Tested on: Mac OS X/32 10.5.1 (amazon) w/threadsafe
* [svn-r14421] Description:Quincey Koziol2008-01-158-15/+20
| | | | | | | Minor cleanups and clarifications to prototype information. Tested on: Mac OS X/32 10.5.1 (amazon)
* [svn-r14420] Description:Quincey Koziol2008-01-1521-131/+125
| | | | | | | | Correct the prototype for H5Sselect_elements() to take an 'hsize_t *' for the coordinates, instead of 'hsize_t **'. Tested on: Mac OS X/32 10.5.1 (amazon)
* [svn-r14419] Description:Quincey Koziol2008-01-152-34/+21
| | | | | | | | Streamline threadsafety code to be simpler and reduce latency of holding locks. Tested on: Mac OS X/32 10.5.1 (amazon) w/threadsafe
* [svn-r14417] Description:Quincey Koziol2008-01-151-36/+40
| | | | | | | | Handled truncated files better, when the truncation falls in decoding a local heap. Tested on: Mac OS X/32 10.5.1 (amazon)
* [svn-r14416] Purpose: Add source files to Windows projectsScott Wegner2008-01-158-12/+104
| | | | | | | | Description: This catches up Windows to most of the new source files that have been added. Specifically, H5FDpkg.h and H5FDspace.c have been added to the library projects, and tcoords.c has been added to testhdf5. This goes for VS2005 and VS6 project files. Tested: Only built, VS2005
* [svn-r14415] Changed default to enable-production to prepare for formal release.Albert Cheng2008-01-152-5/+5
| | | | | | Tested: kagiso only. Not need for h5committest since it is a configure simple change. If it works correct in kagiso, it should work the same for all other machines.
* [svn-r14414] revert the subsetting calls of h5dump to 1 size block, still a ↵Pedro Vicente Nunes2008-01-154-27/+15
| | | | | | bug with size > 1 tested: linux
* [svn-r14413] Description:Quincey Koziol2008-01-1422-62/+62
| | | | | | | | | | | | | | | | | | | Change H5P[gs]et_format_bounds() => H5P[gs]et_libver_bounds() and also enumerated values H5F_FORMAT_{EARLIEST, LATEST} => H5F_LIBVER_{EARLIEST, LATEST} Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14412] more progress on the block hyperslab bug, clean code Pedro Vicente Nunes2008-01-142-18/+10
| | | | | | modified the 3D test case for subsetting with block and stride factors tested: windows, linux
* [svn-r14411] more progress on the block hyperslab bug, clean code Pedro Vicente Nunes2008-01-142-12/+10
| | | | | | | modified the 2D test case for subsetting with block and stride factors tested: windows, linux
* [svn-r14410] code cleaningPedro Vicente Nunes2008-01-141-8/+6
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* [svn-r14409] more progress on the block hyperslab bug, clean code Pedro Vicente Nunes2008-01-143-14/+28
| | | | | | modified the 1D test case for subsetting with block and stride factors tested: windows, linux
* [svn-r14408] Pedro Vicente Nunes2008-01-141-2/+9
| | | | | | | more progress on the block hyperslab bug, clean code tested: windows, linux
* [svn-r14407] more progress on the block hyperslab bug, clean code Pedro Vicente Nunes2008-01-141-10/+6
| | | | tested: windows, linux
* [svn-r14406] bug fix: a type ID was not closedPedro Vicente Nunes2008-01-1412-12/+48
| | | | | not tested, since /examples has several compiling errors due to new APIs this check in should have no problems
* [svn-r14402] Description:Quincey Koziol2008-01-1352-44/+382
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add work-around to allow reading files that were produced with a buggy earlier version of the library, which could create objects with the wrong object header message count. There is now a configure flag "--enable-strict-format-checks" which triggers a failure on reading a file with this sort of corruption (when enabled) and allows the object to be read (when disabled). The default value for the "strict-format-checks" flag is yes when the "debug" flag is enabled and no when the "debug" flag is disabled. Note that if strict format checks are disabled (allowing objects with this particular kind of corruption to be read) and the file is opened with write access, the library will re-write the object header for the corrupt object with the correct # of object header messages. This closes bugzilla bug #1010. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14399] Maintenance: fixed some typos.Elena Pourmal2008-01-111-5/+6
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* [svn-r14398] Bug fix: Fixed installation instructions for the OpenVMS systemElena Pourmal2008-01-111-0/+1
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* [svn-r14397] partial fix for the block selection subsetting bug (2D case ok)Pedro Vicente Nunes2008-01-101-3/+49
| | | | tested: windows, linux
* [svn-r14396] Maintenance: VMS doesn't like multiple "." in the file names; ↵Elena Pourmal2008-01-101-2/+2
| | | | | | we will need to rename tar ball for the VMS user; used generic name <source> to specify the tar ball and top directory names for now.
* [svn-r14395] Maintenance: Updated installation instructions for VMS system.Elena Pourmal2008-01-101-63/+47
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* [svn-r14394] Maintenance on VMS: cleaned up the scripts to avoid the ↵Elena Pourmal2008-01-104-49/+61
| | | | | | | | annoying warning messages and to delete temporary files Platforms tested: VMS server
* [svn-r14393] Changed the way that the file name string is represented.Raymond Lu2008-01-101-2/+4
| | | | Tested on smirom.
* [svn-r14390] Maintenance for VMS system before the final release:Elena Pourmal2008-01-0915-112/+175
| | | | | | | | | Updated utilities test scripts to make output more legible; fixed some typos. Added four new expected output files to avoid false negative reports for the h5dump tests (for ones that expect to have error report in them). Updated MANIFEST to reflect the changes. Platforms tested: VMS server (more testing is on the way)
* [svn-r14389] Changed some test cases to use H5Sselect_elements instead of ↵Raymond Lu2008-01-091-12/+22
| | | | | | | | H5Sselect_hyperslab for test purpose. Tested on smirom only. Simple changes.
* [svn-r14385] This checkin completely modified the test for the coordinate ↵Raymond Lu2008-01-093-330/+423
| | | | | | | | calculation of dataspace selection. It covers many cases. Tested on smirom, kagiso, and linew.
* [svn-r14384] new file with output regarding the new binary filePedro Vicente Nunes2008-01-081-0/+2
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* [svn-r14383] new binary file: with double dataset with NaN valuesPedro Vicente Nunes2008-01-081-0/+0
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* [svn-r14382] bug fix: enable NaN detection for double typePedro Vicente Nunes2008-01-082-1953/+2249
| | | | | | note: RFC at http://www.hdfgroup.uiuc.edu/RFC/HDF5/NaNs_and_HDF5/ tested: windows, linux, solaris
* [svn-r14381] comment typo fixPedro Vicente Nunes2008-01-071-1/+1
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* [svn-r14380] Eliminate old code not used and that was replaced (command line)Pedro Vicente Nunes2008-01-071-308/+73
| | | | tested: windows, linux
* [svn-r14379] add check of some values for the nbit and scale offest filters ↵Pedro Vicente Nunes2008-01-074-12/+20
| | | | | | | | on the h5repack verify function note: some sybols were made public tested: windows, linux
* [svn-r14378] Maintenance: Cleaned up the test script and add reporting of ↵Elena Pourmal2008-01-071-3/+11
| | | | | | false negative tests. Platforms tested: VMS server
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