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* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-1410-516/+531
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| * Merge pull request #1101 in HDFFV/hdf5 from ↵Dana Robinson2018-06-1310-516/+531
| |\ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:vi_develop_normalize to develop * commit '18fbdebb977d7a4dbaa99ec6b153a49e3b4883d5': Cleaned up H5Fmount/unmount code. Normalization with vol_integration branch. Normalization with the vol_integration branch.
| | * Cleaned up H5Fmount/unmount code.Dana Robinson2018-06-071-18/+40
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| | * Normalization with vol_integration branch.Dana Robinson2018-06-077-270/+256
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| | * Normalization with the vol_integration branch.Dana Robinson2018-06-063-235/+242
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* | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-124-3/+91
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| * | Merge pull request #1108 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2018-06-114-3/+91
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'fe325fb554eddceccfa1674d804d5c7aed846bde': HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
| | * | HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does ↵M. Scot Breitenfeld2018-06-082-6/+6
| | | | | | | | | | | | | | | | | | | | | | | | not work properly misc. clean-up
| | * | HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F ↵M. Scot Breitenfeld2018-06-081-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | does not work properly added dependency on H5ff.F90 for H5_ff.F90
| | * | HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does ↵M. Scot Breitenfeld2018-06-083-2/+90
| |/ / | | | | | | | | | | | | | | | not work properly h5fget_obj_count_f with H5F_OBJ_ALL_F counted objects created in h5open_f, which should not be included in the count. The function now returns the correct number of objects (i.e., objects created in h5open are not included in the total).
* | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-084-9/+11
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| * | Merge pull request #1103 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developScot Breitenfeld2018-06-062-4/+6
| |\ \ | | | | | | | | | | | | | | | | * commit 'df64de9eedea0cb7796f37f9c141d81c636742c7': Add fortran MPI to test and example
| | * | Add fortran MPI to test and exampleAllen Byrne2018-06-062-4/+6
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| * | Merge pull request #1102 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developScot Breitenfeld2018-06-062-5/+5
| |\ \ | | |/ | |/| | | | | | | * commit '81300213e7837fd980b74d95482e0a71777773fd': Add mpi include folders for fortran C objects
| | * Add mpi include folders for fortran C objectsAllen Byrne2018-06-062-5/+5
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* | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-04112-2245/+2804
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| * Merge pull request #1097 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to ↵Dana Robinson2018-06-011-2/+3
| |\ | | | | | | | | | | | | | | | | | | develop * commit 'd1719d4906009c76eb286fbfe933328395404443': Fixed MANIFEST
| | * Merge branch 'develop' of ↵Dana Robinson2018-06-012-4/+4
| | |\ | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into develop
| | * | Fixed MANIFESTDana Robinson2018-06-011-2/+3
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| * | | Merge pull request #1096 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-06-011-1/+18
| |\ \ \ | | |_|/ | |/| | | | | | | | | | * commit 'f5b0b1c60784a3dbfea6cdf6082106fc8bed0462': Fix usage of compression lib in shared tests
| | * | Fix usage of compression lib in shared testsAllen Byrne2018-06-011-1/+18
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| * | Merge pull request #1095 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2018-06-012-4/+4
| |\ \ | | |/ | |/| | | | | | | * commit '1a018cb3340ec8ecd4ded25ec719ac831aa165bd': Fix jni function call version
| | * Fix jni function call versionAllen Byrne2018-06-012-4/+4
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| * Merge pull request #1093 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Larry Knox2018-06-011-2/+2
| |\ | | | | | | | | | | | | | | | | | | develop * commit '7a5fa418e3edf1f85f3e1462a119c3f5aa41a3d1': Fix the error found after earlier checkin.
| | * Fix the error found after earlier checkin.Vailin Choi2018-06-011-2/+2
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| * Merge pull request #1043 in HDFFV/hdf5 from ↵Dana Robinson2018-05-3121-867/+791
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop * commit '1da9c5545c013ebc540ba3044810889d4acfa5be': Restored some unused #defines to the deprecated section of H5Dpublic.h. Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers. Updated commenting in the H5DO compat test. Stripped out most of the duplicated functionality in the H5DO compat test. * Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines. * Fixed the error tests * Moved common functionality into helper functions Normalize with trunk prior to update merge Fixed a warning. Finished move of H5DOread/write_chunk calls to H5D. First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
| | * Restored some unused #defines to the deprecated section of H5Dpublic.h.Dana Robinson2018-05-151-1/+13
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| | * Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-05-1571-1396/+1526
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| | * | Added deprecated symbol wrappers for the H5DOwrite/read_chunkDana Robinson2018-05-043-1/+25
| | | | | | | | | | | | | | | | wrappers.
| | * | Updated commenting in the H5DO compat test.Dana Robinson2018-05-041-11/+9
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| | * | Stripped out most of the duplicated functionality in the H5DODana Robinson2018-05-041-2046/+147
| | | | | | | | | | | | | | | | compat test.
| | * | * Added H5DO compatibility functions.Dana Robinson2018-05-048-77/+2292
| | | | | | | | | | | | | | | | | | | | * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
| | * | * Fixed the error testsDana Robinson2018-05-025-92/+139
| | | | | | | | | | | | | | | | * Moved common functionality into helper functions
| | * | Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-04-30103-2676/+2521
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| | * | | Normalize with trunk prior to update mergeDana Robinson2018-04-301-16/+16
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| | * | | Fixed a warning.Dana Robinson2018-04-301-1/+1
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| | * | | Finished move of H5DOread/write_chunk calls to H5D.Dana Robinson2018-04-305-600/+142
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| | * | | First stage of moving H5DOread/write_chunk() to src/ and makingDana Robinson2018-04-3012-306/+291
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
| * | | | Merge pull request #1092 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to ↵Dana Robinson2018-05-312-4/+17
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '931bd3aa6a7aa742d3a302b49eb20233b021f1bf': Added a RELASE.txt entry for HDFFV-10505. Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
| | * | | | Added a RELASE.txt entry for HDFFV-10505.Dana Robinson2018-05-311-0/+13
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| | * | | | Changed 'deprecated' to indicate 'no longer supported' in theDana Robinson2018-05-311-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | --enable-debug/production configure flags.
| * | | | | Merge pull request #1091 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-05-318-42/+210
| |\ \ \ \ \ | | |/ / / / | |/| | | | | | | | | | | | | | | | * commit 'b28815c20554f7cd35ec820e1e5ba97624ff8e88': H5O_info fixes for java and examples
| | * | | | H5O_info fixes for java and examplesAllen Byrne2018-05-318-42/+210
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| * | | | Merge pull request #1039 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2018-05-3161-551/+1088
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '796dc16e3409b9f3746cfa4127adb6dd334ee8c9': (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463. Changes made based on feedback from pull request #1039. Fix for HDFFV-10180 Performance issues with H5Oget_info.
| | * \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-3120-570/+584
| | |\ \ \ \ | | |/ / / / | |/| | | | | | | | | | | | | | | | * commit 'e8ece625f223032db0d26cfffafc045e4ccdf37d': Normalize with vol_integration.
| * | | | | Merge pull request #1088 in HDFFV/hdf5 from ↵Dana Robinson2018-05-3120-570/+584
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:vi_develop_normalize to develop * commit '384a1ec709b841ce1eb8b9bf74be988a1c24d638': Normalize with vol_integration.
| | * | | | | Normalize with vol_integration.Dana Robinson2018-05-2920-570/+584
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| | * | | | (1) Made the change according to the pull request feedback.Vailin Choi2018-05-312-203/+2
| | | | | | | | | | | | | | | | | | | | | | | | (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
| | * | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-309-272/+150
| | |\ \ \ \ | | |/ / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'd184e6db94163dcc8761182744a6c524a4850887': Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c. Correct script names Fix typo Minor H5FS tweaks. Put back CTRL-L chars Update support link Update text Valgrind fixed by checking for prefix_len of 0
| * | | | | Merge pull request #1085 in HDFFV/hdf5 from ↵Dana Robinson2018-05-251-206/+91
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:vi_develop_normalize to develop * commit '448cc37a90b2a71aac45c96949da07d5a9cc9cbd': Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
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