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* [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from ↵Mohamad Chaarawi2015-02-1646-1198/+102
| | | | | | | | | | | | autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes. tested with h5committest.
* [svn-r26177] Snapshot version 1.9 release 214HDF Tester2015-02-1513-26/+26
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* [svn-r26173] HDF5-9117: if testing for proper working 'tr' command is needed.Albert Cheng2015-02-142-14/+2
| | | | | | | | | | Long time ago, the tr command in some platform does not work properly and this test was added to detect broken tr and abort the configure process. We are not aware of such broken tr command in current systems and decided to retire this test. The setup of ${TR} is still needed as it is used to process DEBUG_PKG. Tested: h5committested plus using "./configure --enable-debug=all" in jam.
* [svn-r26172] Fix for: HDFFV-8685 -- Have one include file to use for HL ↵Scot Breitenfeld2015-02-137-7/+1
| | | | | | libraries added hdf5.h to hdf5_hl.h
* [svn-r26170] Fix for HDFFV-8559Scot Breitenfeld2015-02-134-1/+146
| | | | Correction of mistyped variable and removed implicit typing for interfaces.
* [svn-r26162] Update versionsAllen Byrne2015-02-121-11/+11
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* [svn-r26161] Fix cmake case. Allen Byrne2015-02-1211-25/+27
| | | | | Turn on F2003 by default. Set source properties in fortran cmake files.
* [svn-r26149] Fix potential memory error reported by valgrind inNeil Fortner2015-02-091-23/+21
| | | | | | | | H5D__link_chunk_collective_io. This would occur when performing collective I/O on a dataset with only 1 chunk, and a participating process had nothing to read or write. Tested: jam, koala, ostrich (h5committest)
* [svn-r26146] Snapshot version 1.9 release 213HDF Tester2015-02-0813-26/+26
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* [svn-r26124] Fixed issue with deprecated symbols for H5G constantsScot Breitenfeld2015-02-042-27/+23
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* [svn-r26122] Fix for HDFFV-9040 h5rget_object_type_f returns different types ↵Scot Breitenfeld2015-02-033-43/+52
| | | | | | | | than indicated by API Slight change of global variable definitions from C. Tested: jam.
* [svn-r26112] Add quotes around nameAllen Byrne2015-02-021-1/+1
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* [svn-r26109] Correct name of source fileAllen Byrne2015-02-021-1/+1
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* [svn-r26106] Disable flush1/flush2 test under debug VFD on Windows.Allen Byrne2015-02-021-12/+77
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* [svn-r26092] Snapshot version 1.9 release 212HDF Tester2015-02-0113-26/+26
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* [svn-r26087] update build procedure for Hopper (Cray).. only static now. Mohamad Chaarawi2015-01-301-26/+19
| | | | Will add shared when we introduce support later.
* [svn-r26074] fix test destinationAllen Byrne2015-01-291-2/+2
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* [svn-r26040] HDFFV-9018: Install pdb files to bin folder with dlls.Allen Byrne2015-01-267-9/+9
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* [svn-r26036] HDFFV-8736: Patch H5PL.c and test for cygwin plugin support.Allen Byrne2015-01-262-2/+16
| | | | Tested: local linux and cygwin
* [svn-r26012] make the print format for address overflow error windows friendly.Mohamad Chaarawi2015-01-231-4/+4
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* [svn-r26011] Added (i.e. re-added) missing h5oget_info_c definition.Scot Breitenfeld2015-01-231-0/+1
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* [svn-r26010] Fix for:Scot Breitenfeld2015-01-2220-539/+441
| | | | | | | | | | HDFFV-9049 Intel 15.0 15.0.1 Fails with --enable-fortran2003 Added BIND to the Fortran 2003 functions. Tested: windows (tested concept) linux (--enable-fortran and --enable-fortran2003)
* [svn-r26009] Code Comment cleanup:Scot Breitenfeld2015-01-223-21/+15
| | | | | | | | | | | | | | | | ----------------------- Remove the numbers in the comments associated with: H5G_UNKNOWN_F (-1) H5G_LINK_F 0 H5G_GROUP_F 1 H5G_DATASET_F 2 H5G_TYPE_F 3 These should not be defined as a number since they can changed. They should be considered named parameters, not actual values. HDFFV-9040 h5rget_object_type_f returns different types than indicated by API
* [svn-r26005] fix error return value. minor change.Mohamad Chaarawi2015-01-221-2/+2
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* [svn-r26002] move checks on reading/writing beyond file eoa outside of the ↵Mohamad Chaarawi2015-01-226-21/+14
| | | | | | file drivers and into a centralized place in H5FD_read/write. tested h5committest.
* [svn-r25994] revert adding the has_mpi_atomicity feature flag and use the ↵Mohamad Chaarawi2015-01-214-12/+6
| | | | | | has_mpi flag instead.
* [svn-r25993] remove last usage of IS_H5FD_MPIO.Mohamad Chaarawi2015-01-211-1/+0
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* [svn-r25990] Add VFD flush2 depends on flush1 property to testAllen Byrne2015-01-211-0/+1
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* [svn-r25987] Use variable instead of hard coded valueAllen Byrne2015-01-201-2/+2
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* [svn-r25986] HDFFV-9060: Changed test folder to use different test folders ↵Allen Byrne2015-01-201-46/+180
| | | | | | for VFDs and regular. Needed to set srcdir env var and specify working folder to the folders where all the reference files were copied. Tested: local linux
* [svn-r25984] change the message flag H5O_MSG_FLAG_FAIL_IF_UNKNOWN toMohamad Chaarawi2015-01-207-20/+38
| | | | | | | | H5O_MSG_FLAG_FAIL_IF_UNKNOWN_AND_OPEN_FOR_WRITE. Will add a new H5O_MSG_FLAG_FAIL_IF_UNKNOWN_ALWAYS with the new avoid_truncate patch coming later. tested h5committest
* [svn-r25983] HDFFV-1125: Eliminate IS_H5FD_MPI() macro use in the library ↵Mohamad Chaarawi2015-01-206-17/+13
| | | | | | | | and replace with driver feature flag(s). Add an MPI atomicity feature flag and remove the macro from the library. tested Parallel on Jam.
* [svn-r25981] Snapshot version 1.9 release 211HDF Tester2015-01-1813-26/+26
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* [svn-r25980] Reverting check-in 25978, C_LONG_DOUBLE seems to be 16 bytes ↵Scot Breitenfeld2015-01-155-227/+9
| | | | sometimes and 10 bytes other times. Not sure why.
* [svn-r25978] Bug fix for HDFFV-8847Scot Breitenfeld2015-01-135-9/+227
| | | | Tested: h5committest
* [svn-r25975] Snapshot version 1.9 release 210HDF Tester2015-01-1113-26/+26
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* [svn-r25971] Update with retirement of AIX 5.3 and addition of AIX 6.1 support.Albert Cheng2015-01-091-3/+3
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* [svn-r25963] Do not remove the prefix in the chunk alloc file, otherwise it ↵Mohamad Chaarawi2015-01-081-1/+1
| | | | | | | | makes the H5Fcreate fail when prefix is specified. tested parallel on Jam.
* [svn-r25955] Added Perform and io_timer back into build.Allen Byrne2015-01-052-2/+2
| | | | Tested: local linux cmake
* [svn-r25954] HDFFV-9046: reorganize hdf5/perform, step 2Albert Cheng2015-01-052-7/+13
| | | | | | | | | | | | | Last changes had caused problems with Windows platform: 1. H5private.h in io_timer.h is not accessible in the distributed shared library of tools. Need to move it to io_timer.c. 2. debug_start_stop_time() would not be available outside of h5perf. Some favor of compiler does not like it. Screened it out for now. 3. mere "extern" is not good enough for Windows shared library. Must mark them as DLL. Need to mark them as "H5TOOLS_DLL". 4. STANDALONE mode is broken. Screened out the code for now. Tested; h5committest.
* [svn-r25953] Comment out printf statement as it caused system resource ↵Allen Byrne2015-01-051-3/+5
| | | | | | issues on Windows. Test now executes in 1/10 of time. Tested: local linux and Windows
* [svn-r25951] HDFFV-9054: disable io_timer in tools lib and perform ↵Allen Byrne2015-01-052-2/+2
| | | | sub-folder due to SHARED compile issues and other issues.
* [svn-r25949] Snapshot version 1.9 release 209HDF Tester2015-01-0413-26/+26
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* [svn-r25946] Removed debug statments that use //.Albert Cheng2015-01-043-12/+0
| | | | Tested: env CFLAGS=-ansi buildhdf5 in jam and parallel platypus.
* [svn-r25940] HDFFV-9046: reorganize hdf5/perform, step 2Albert Cheng2015-01-019-18/+13
| | | | | | | | | | | | | | | | | | | | | | Move timing measurement routines used by h5perf and h5perf_serial to tools/lib so that they can be used by other tools too. tools/lib/io_timer.c tools/lib/io_timer.h tools/perform/io_timer.c tools/perform/io_timer.h renamed perform/io_timer.[ch] to lib/io_timer.[ch] tools/lib/Makefile.am tools/lib/Makefile.in tools/lib/CMakeLists.txt tools/perform/Makefile.in tools/perform/Makefile.am tools/perform/CMakeLists.txt MANIFEST updated due to the move. Tested; h5committest and jam (serial)
* [svn-r25938] Remove build and test commands for deleted benchpar.cAllen Byrne2014-12-312-16/+0
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* [svn-r25934] Fix incorrectly combined check.Allen Byrne2014-12-311-11/+1
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* [svn-r25933] updated.Albert Cheng2014-12-301-2/+0
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* [svn-r25932] HDFFV-8902: merge the source code of h5perf and h5perf_serial, ↵Albert Cheng2014-12-3015-575/+377
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | stage 1. tools/perform/sio_timer.h: tools/perform/pio_timer.c: tools/perform/io_timer.h: tools/perform/io_timer.c: Renamed pio_timer.[ch] as io_timer.[ch]; merged content of sio_timer.[ch] into io_timer.[ch] so that both h5perf and h5perf_serial call the combined io_timer.[ch]. Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs. Screened out set_timer_type() and get_timer_type() which were not used by any code. tools/perform/Makefile.am: tools/perform/Makefile.in: tools/perform/CMakeLists.txt Adjusted to use io_timer.c for both h5perf and h5perf_serial. tools/perform/pio_perf.c: tools/perform/sio_perf.c: tools/perform/pio_perf.h: tools/perform/sio_perf.h: Renamed [sp]io_time_destory() to same io_time_destroy(); Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs. tools/perform/pio_engine.c: tools/perform/sio_engine.c: Removed #include io_timer.h since it was already #include by [sp]io_perf.h. MANIFEST: Updated the merge of [sp]io_timer.[ch] into io_timer.[ch]. Tested: h5committest and jam in extra.
* [svn-r25929] Description:Quincey Koziol2014-12-2916-95/+138
| | | | | | | | | | Clean up EOF code within library and add 'mem_type' parameter to 'get_eof' VFD callback, to avoid various ambiguous situations, particularly with the multi VFD. (Supports changes for 'avoid_truncate' feature also) Tested on: MacOSX/64 10.10.1 (amazon) w/serial & parallel h5committest forthcoming
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