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* Added the subfile_readwrite test and modified the implementation as a result ↵Richard Warren2020-06-251-0/+166
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* Update Makefile.am files and fix issues unearthed by building with autotoolsRichard Warren2020-06-235-6/+20
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* Initial subfiling branchRichard Warren2020-06-2247-1/+8474
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* Merge pull request #2610 in HDFFV/hdf5 from ↵David Young2020-06-166-12/+12
|\ | | | | | | | | | | | | ~DYOUNG/werror:hdffv-11060-examples-destdir to develop * commit '4cebd8aa6c965fe2e5dde6dbff36b2be3ca58bf1': Make examples installation respect DESTDIR. Fixes HDFFV-11060.
| * Make examples installation respect DESTDIR. FixesDavid Young2020-05-266-12/+12
| | | | | | | | HDFFV-11060.
* | Merge pull request #2615 in HDFFV/hdf5 from ↵Jake Smith2020-06-152-1/+5
|\ \ | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:bugfix/splitter_valgrind_patch to develop * commit '6462c67b6578e48c1ef6d847be59c0b5e3598a50': Patch a few holes in the Splitter VFD implementation.
| * | Patch a few holes in the Splitter VFD implementation.Jacob Smith2020-05-292-1/+5
| | | | | | | | | | | | | | | * Missing logfile close on driver-open failure. * Initialize empty string in test/vfd (logfile path in W/O compat check).
* | | Merge pull request #2646 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-06-122-28/+6
|\ \ \ | | | | | | | | | | | | | | | | * commit '998c6470d78e14228695419c3b514c35ecf3d69e': Remove unnecessary version conditions for Clang compilers.
| * | | Remove unnecessary version conditions for Clang compilers.Larry Knox2020-06-122-28/+6
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* | | Merge pull request #2643 in HDFFV/hdf5 from ↵Vailin Choi2020-06-113-6/+23
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10961-h5clear-usage-statement-give to develop * commit '01b632c69ca1c97c2b0e1aaeeab1dd2362b580a6': Fix for HDFFV-10961: Couple changes to the tests' usage output files for h5clear. Fix for HDFFV-10961: add description to usage for --increment option.
| * | | Fix for HDFFV-10961:vchoi2020-06-112-4/+16
| | | | | | | | | | | | | | | | Couple changes to the tests' usage output files for h5clear.
| * | | Fix for HDFFV-10961: add description to usage for --increment option.vchoi2020-06-111-2/+7
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* | | Merge pull request #2636 in HDFFV/hdf5 from ↵Larry Knox2020-06-111-4/+126
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~LRKNOX/hdf5_lrk:HDFFV-11000-update-testh5cc.sh.in-for-version to develop * commit '5c0bd670d6e9919c463fbc05de99e2ba55b0761e': Add tests for all version to H5_NO_DEPRECATED_SYMBOLS section and to section for current version, with and without default API version flags. HDFFV-11000: update-testh5cc.sh.in to test sample versioned functions in HDF5 1.10, 1.12 and develop.
| * | | Add tests for all version to H5_NO_DEPRECATED_SYMBOLS sectionLarry Knox2020-06-101-2/+13
| | | | | | | | | | | | | | | | | | | | and to section for current version, with and without default API version flags.
| * | | HDFFV-11000: update-testh5cc.sh.in to test sample versioned functionsLarry Knox2020-06-101-3/+114
| | | | | | | | | | | | | | | | in HDF5 1.10, 1.12 and develop.
* | | | Merge pull request #2639 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-06-102-1/+3
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit 'a33667faf226f5d8c9633bf537893e8fce1bf1f6': Add c++ to --enable-sanitize-checks option.
| * \ \ \ Merge branch 'develop' of ↵buildbot2020-06-104-35/+60
| |\ \ \ \ | |/ / / / |/| | | | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
* | | | | Merge pull request #2633 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-06-106-70/+44
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '20eab963899841c9a003baebead8e3bc07d9e127': Remove duplicate entries in MANIFEST. Make changes to CMake CompilerFlags.cmake files so extra flags are loaded for non-GNU compilers. Update new clang files to not pick up clang as vendor for pgCC. Add new files to MANIFEST Temporary demotion of 2 -Werror warning flags that fail on macos 10.12 Remove Production flag unknown to Apple clang.
| * | | | | Remove duplicate entries in MANIFEST.Larry Knox2020-06-101-2/+0
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| * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Larry Knox2020-06-104-33/+60
| |\ \ \ \ \ | |/ / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '7f0c0134166275c0745e0e65f9d81b4de72d5ce2': Fix MANIFEST Remember the info for the last ID looked up for a given ID type. Eliminate allocating file & memory offset & length arrays when performing I/O on a single element. Remove redundant metadata cache tagging from some low-level internal chunk functions. The metadata cache tagging has already been done by routines further up the call stack.
* | | | | | Merge pull request #2637 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-06-101-0/+2
|\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '1e038bf49588d163762965c7a15fb76e3a689ef2': Fix MANIFEST
| * | | | | | Fix MANIFESTDana Robinson2020-06-101-0/+2
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* | | | | | | Merge pull request #2635 in HDFFV/hdf5 from cache_last_id_info to developQuincey Koziol2020-06-101-2/+22
|\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '0ef32f07fb9e8fb6063f3318425506047454d6f4': Remember the info for the last ID looked up for a given ID type.
| * | | | | | | Remember the info for the last ID looked up for a given ID type.Quincey Koziol2020-06-091-2/+22
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* | | | | | | Merge pull request #2634 in HDFFV/hdf5 from opt_single_selection_io to developQuincey Koziol2020-06-101-27/+32
|\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a8a4e9f27b67ae2e22970e42859225adcc2e5cbb': Eliminate allocating file & memory offset & length arrays when performing I/O on a single element.
| * | | | | | | Eliminate allocating file & memory offset & length arrays when performing ↵Quincey Koziol2020-06-091-27/+32
| |/ / / / / / | | | | | | | | | | | | | | | | | | | | | I/O on a single element.
* | | | | | | Merge pull request #2632 in HDFFV/hdf5 from remove_redundant_chunk_tags to ↵Quincey Koziol2020-06-101-4/+4
|\ \ \ \ \ \ \ | |/ / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '9e8899c3b47a2041242dc4539ca8b1c5e151a371': Remove redundant metadata cache tagging from some low-level internal chunk functions. The metadata cache tagging has already been done by routines further up the call stack.
| * | | | | | Remove redundant metadata cache tagging from some low-level internal chunk ↵Quincey Koziol2020-06-091-4/+4
|/ / / / / / | | | | | | | | | | | | | | | | | | functions. The metadata cache tagging has already been done by routines further up the call stack.
| | * | | | Add c++ to --enable-sanitize-checks option.buildbot2020-06-102-1/+3
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| * | | | Make changes to CMake CompilerFlags.cmake files so extra flags areLarry Knox2020-06-104-60/+35
| | | | | | | | | | | | | | | | | | | | loaded for non-GNU compilers.
| * | | | Update new clang files to not pick up clang as vendor for pgCC.Larry Knox2020-06-094-18/+19
|/ / / / | | | | | | | | | | | | | | | | | | | | Add new files to MANIFEST Temporary demotion of 2 -Werror warning flags that fail on macos 10.12 Remove Production flag unknown to Apple clang.
* | | | Merge pull request #2631 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-06-081-7/+6
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit 'b942a4d8a3e27317cac50ce37ff5302d477664d8': Clean up code to get clang version in config/linux-gnulibc1
| * | | | Clean up code to get clang version in config/linux-gnulibc1Larry Knox2020-06-081-7/+6
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* | | | Merge pull request #2623 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-06-087-4/+511
|\ \ \ \ | |/ / / | | | | | | | | | | | | | | | | * commit 'c7626f79fdee4eee13925e240ef41e61f3367eab': Add flags from config/clang-warnings/*general files to H5 C and CXX flags for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h. Add files for adding warning flags for clang compilers in autotools configure.
| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Larry Knox2020-06-074-42/+50
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'aa338c3a87a4544ccb164832422e3e2462a57b88': Detect when there's the same-shaped selection of a single block of elements on both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case. Normalization of H5T.c with 1.10. Normalization of H5D.c with 1.10.
| * | | | Add flags from config/clang-warnings/*general files to H5 C and CXX flags ↵Larry Knox2020-06-067-90/+22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h.
| * | | | Add files for adding warning flags for clang compilers in autotoolsLarry Knox2020-06-028-1/+576
| | | | | | | | | | | | | | | | | | | | configure.
* | | | | Merge pull request #2630 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-06-086-46/+38
|\ \ \ \ \ | |_|/ / / |/| | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '87695c999ad7ea348ee6dc03b46b0bd345f7d7df': Minor normalizations with HDF5 1.10.
| * | | | Minor normalizations with HDF5 1.10.Dana Robinson2020-06-076-46/+38
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* | | | | Merge pull request #2626 in HDFFV/hdf5 from tiny_shape_same_opt to developQuincey Koziol2020-06-062-7/+16
|\ \ \ \ \ | |/ / / / |/| | | | | | | | | | | | | | * commit 'de54cff50c419751e0080b6a732facac43f87ba6': Detect when there's the same-shaped selection of a single block of elements on both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case.
| * | | | Detect when there's the same-shaped selection of a single block of elements onQuincey Koziol2020-06-052-7/+16
|/ / / / | | | | | | | | | | | | | | | | | | | | both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case.
* | | | Merge pull request #2625 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-06-042-35/+34
|\ \ \ \ | |/ / / |/| | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'e22d126639e139518e4b5f1ac35a008ec429f698': Normalization of H5T.c with 1.10. Normalization of H5D.c with 1.10.
| * | | Normalization of H5T.c with 1.10.Dana Robinson2020-06-041-24/+24
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| * | | Normalization of H5D.c with 1.10.Dana Robinson2020-06-041-11/+10
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* | | | Merge pull request #2622 in HDFFV/hdf5 from fix_h5doappend to developQuincey Koziol2020-06-021-14/+3
|\ \ \ \ | |/ / / |/| | | | | | | | | | | * commit 'c6b836527f31a731e022083ebe1b9b18f8cdd29a': Eliminate unneccesary creation of DXPL
| * | | Eliminate unneccesary creation of DXPLQuincey Koziol2020-06-021-14/+3
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* | | Merge pull request #2621 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-06-024-20/+23
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'cc15d1039af86deb77c9dc9188412ce361599b17': Normalizations with 1.10 branch.
| * | | Normalizations with 1.10 branch.Dana Robinson2020-06-024-20/+23
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* | | | Merge pull request #2619 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-06-0124-473/+466
|\ \ \ \ | |/ / / | | / / | |/ / |/| | | | | | | | to develop * commit '5f0eed3fdc4fff9b714b5aa3d0d43114a95c0f29': Normalization with hdf5_1_10
| * | Normalization with hdf5_1_10Dana Robinson2020-06-0124-473/+466
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