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* [svn-r5170] Raymond Lu2002-04-1117-340/+1373
| | | | | | | | | | | Purpose: New feature Description: Fill-value's behaviors for contiguous dataset have been redefined. Basicly, dataset won't allocate space until it's necessary. Full details are available at http://hdf.ncsa.uiuc.edu/RFC/Fill_Value, at this moment. Platforms tested: Linux 2.2.
* [svn-r5169] Pedro Vicente Nunes2002-04-111-38/+34
| | | | | | | | | | | | | | | | | | Purpose: test for the H5Dset_extent API function Description: there are 2 types of tests: Test H5Dset_extent with chunks on the raw data cache Test H5Dset_extent with chunks written to file Platforms tested: Windows 2000 SUN( arabica) LINUX (eirene) IRIX64 (modi4)
* [svn-r5168] Pedro Vicente Nunes2002-04-1112-245/+1482
| | | | | | | | | | | | | | | | | | | | | | Purpose: H5Dset_extent API function Description: 1 new public function: H5Dset_extent, that allows shrinking a dataset several private functions that free the previously allocated chunks H5F_istore_prune_by_extent, H5B_prune_by_extent : removes the chunks H5F_istore_initialize_by_extent : initializes them with the fill value H5S_select_fill is used to fill the selection in the memory buffer Platforms tested: Windows 2000 SUN( arabica) LINUX (eirene) IRIX64 (modi4)
* [svn-r5167] Pedro Vicente Nunes2002-04-111-21/+13
| | | | | | Purpose: turned temporarely off this test, while the rest of the code is not checked in
* [svn-r5165] Purpose:Albert Cheng2002-04-102-5/+29
| | | | | | | | | | | Feature Description: Added comments that this is intended as an example of file driver. Added a macro detection at the end to flag if non-public definitions are used. (only check for H5private.h which is mostly likely used. Not bullet proof at all.) Platforms tested: eirene.
* [svn-r5164] Just couple white space editing in HMPI_ERROR macros.Albert Cheng2002-04-101-2/+2
| | | | Nothing of consequence.
* [svn-r5162] Purpose:Bill Wendling2002-04-101-1/+5
| | | | | | | | | | | | Third Time's a Charm Description: Okay...So, the H5Tinit.c isn't in the $(top_srcdir) directory but in the $(top_builddir) directory. Solution: Hack so that if it is H5Tinit that we're compiling, then point to the $(top_builddir) directory. Platforms tested: Linux
* [svn-r5161] Purpose:Bill Wendling2002-04-101-1/+1
| | | | | | | | | | | Bug Fix Fix Description: The way I fixed the bug didn't work on Linux. Solution: Changed so that we use the $* macro with a .c extension instead of assuming that $< won't have a full pathname already. Platforms tested: Linux
* [svn-r5160] Purpose:Bill Wendling2002-04-101-7/+5
| | | | | | Regen Description: Updated Dependencies file...
* [svn-r5159] Purpose:Bill Wendling2002-04-101-1/+99
| | | | | | Updated Description: Regenerated Dependencies file for addition of set_extent.c file
* [svn-r5158] Purpose:Bill Wendling2002-04-101-5/+5
| | | | | | | Update Description: Changed set_extend to set_extent to reflect the change in the filename...
* [svn-r5157] Purpose:Bill Wendling2002-04-101-1/+1
| | | | | | | | | | Bug Fix Description: We couldn't find the HDF5 source files for compilation with Pablo. Solution: Have it find them in the $(top_srcdir)/src/ directory. Platforms tested: Modi4
* [svn-r5156] Purpose:Bill Wendling2002-04-101-1/+1
| | | | | | Update Description: Updated to reflect change of set_extend.c to set_extent.c.
* [svn-r5155] Pedro Vicente Nunes2002-04-091-0/+0
| | | | | | Purpose: Made a new all.zip that includes a new project called "set_extent".
* [svn-r5154] Pedro Vicente Nunes2002-04-092-164/+320
| | | | | | | Purpose: Renamed the all the functions "set_extend" to "set_extent". Renamed the test file accordingly
* [svn-r5153] Pedro Vicente Nunes2002-04-092-0/+1
| | | | | | Purpose: Modified all.zip file to include a windows project for set_extend
* [svn-r5152] Purpose:Quincey Koziol2002-04-0912-46/+1164
| | | | | | | | | | | | | | | New Feature Description: Added new H5Dfill() routine to fill the elements in a selection for a memory buffer with a fill value. This is a user API wrapper around some internal routines which were needed for the fill-value modifications from Raymond as well as Pedro's code for reducing the size of a chunked dataset. Platforms tested: FreeBSD 4.5 (sleipnir) [and IRIX64 6.5 (modi4) in parallel, in a few minutes]
* [svn-r5151] Purpose:Quincey Koziol2002-04-091-1/+1
| | | | | | | | Code cleanup Description: Remove the 'configure.lineno' file during "make distclean" Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5148] Snapshot version 1.5 release 24HDF Admin2002-04-064-162/+184
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* [svn-r5147] Raymond Lu2002-04-054-0/+277
| | | | | | | | | | Purpose: New feature Description: Added a query function H5Tget_member_index for compound and enumeration data types, to retrieve member's index by its name. Platforms tested: Linux 2.2
* [svn-r5143] ./hdf5-devel/tools/h5ls/h5ls.cRobb Matzke2002-04-051-33/+1
| | | | | | | | | | | | Minor h5ls bugfix for compound types with array members. (Similar changes shortly for 1.4 branch). 2002-04-04 16:39:09 Robb Matzke <matzke@arborea.spizella.com> * display_cmpd_type: Removed code to display array dimensions from display_cmpd_type() since this was a holdover from the days when hdf5 didn't have an array datatype and was duplicated by display_array_type().
* [svn-r5142] ./hdf5-devel/src/H5Fistore.cRobb Matzke2002-04-052-6/+6
| | | | | | | | | Minor h5ls bugfix for compound types with array members. (Similar changes shortly for 1.4 branch). 2002-04-02 10:22:55 Robb Matzke <matzke@arborea.spizella.com> * H5F_istore_read: Realigned a couple of comments.
* [svn-r5139] Purpose:Quincey Koziol2002-04-032-6/+2
| | | | | | | | Code cleanup Description: Clean up a few warnings on the SGI. Platforms tested: IRIX64 6.5 (modi4)
* [svn-r5138] Purpose:Quincey Koziol2002-04-0310-150/+517
| | | | | | | | | | | | | | | | | | | | | | Bug Fix & Code Cleanup Description: The MPI-IO optimized transfer routines (H5S_mpio_spaces_read/H5S_mpio_space_write) are not being invoked in all the cases where they could be used. Additionally, the code for determining if an optimized transfer is wrapped into the actual I/O transfer routine in a very confusing way. Solution: Re-enabled MPI-IO optimized transfer routines in all the cases where they should work. Extracted all the pre-conditions for optimized transfers into separate routines from the transfer routines. Platforms tested: FreeBSD 4.5 (sleipnir) & IRIX64 6.5 (modi4)
* [svn-r5135] Purpose:Albert Cheng2002-04-034-11/+48
| | | | | | | | | | | | | | | | | | | | | | Features. Description: Error stack used to report only hdf5 predefined error messages because it takes only static strings. Runtime defined messages were not pushed to the stack. Added the means and macros to push MPI error strings onto the hdf5 error stack. Added a new minor error class as H5E_MPIERR for this class of messages. H5Epulbic.h, H5E.c: Added H5E_MPIERR and its minor class description. H5Eprivate.h: Added HMPI_XXX macros to push MPI error strings to the stack. H5FDmpio.c: Changed couple places to use the new macros to test the new macros. A more through changes to make use of these new macros will be done later. Platforms tested: eirene (serial, parallel) modi4(parallel)
* [svn-r5134] Purpose:Quincey Koziol2002-04-031-6/+6
| | | | | | | | Fix typo... Description: Fix typo in last H5S_find() checkin... Platforms tested: IRIX64 6.5 (modi4)
* [svn-r5133] Purpose:Bill Wendling2002-04-021-3/+0
| | | | | | | | | Update Description: Updated MANIFEST to reflect the removal of some autotools files which the autotool upgrade made obsolete. Platforms tested: Linux
* [svn-r5132] Purpose:Bill Wendling2002-04-0218-13677/+55005
| | | | | | | | | | | | | | | | | | | Autotools Update Description: I've updated autoconf, automake, and libtool to the latest/greatest versions; 2.53, 1.6, and 1.4.2 resp. Many changes come with the new versions: - ltconfig is no longer used - acconfig.h is no longer used (#define values are declared with the macro) - regeneration of all of the aclocal.m4, configure, and H5config.h.in files. - new config.{guess,sub} files - new ltmain.sh file Platforms tested: AIX (blue), and Linux
* [svn-r5131] Purpose:Quincey Koziol2002-04-023-48/+57
| | | | | | | | | | | | | | Code cleanup Description: The function pointer for doing parallel I/O was being set in the H5D_read and H5D_write routines instead of in H5S_conv, where it belongs. Solution: Added an extra 'flags' parameter to H5S_find to allow the function to determine when to set the MPIO functions instead of the regular optimized I/O routines and get rid of code messing with the function pointer in the H5D routines. Platforms tested: IRIX64 6.5 (modi4)
* [svn-r5130] Purpose:Quincey Koziol2002-04-0215-659/+740
| | | | | | | | | | | | | | | | | | | | | | Bug Fix & Feature Description: The selection offset was being ignored for optimized hyperslab selection I/O operations. Additionally, I've found that the restrictions on optimized selection I/O operations were too strict and found a way to allow more hyperslabs to use the optimized I/O routines. Solution: Incorporate the selection offset into the selection location when performing optimized I/O operations. Allow optimized I/O on any single hyperslab selection and also allow hyperslab operations on chunked datasets. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5128] Updated.Albert Cheng2002-04-021-0/+2
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* [svn-r5126] Purpose:Quincey Koziol2002-04-012-43/+105
| | | | | | | | | | | Bug Fix (sorta) Description: "small" contiguous hyperslabs were not being detected correctly by H5S_hyper_select_contigous() leading to poorer performance than possible. Solution: Corrected check for small hyperslabs. Also cleaned up the H5S_find() code. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5124] Raymond Lu2002-04-011-0/+2
| | | | | | | | | | | | Purpose: Bug fix(#697) Description: Variable-length string is not treated as string. Solution: Added character set and padding as VL string's attributes. They can be set and retrieved. Platforms tested: Solaris 8, IRIX64 6.5 parallel, and FreeBSD.
* [svn-r5123] Raymond Lu2002-03-294-16/+150
| | | | | | | | | | | Purpose: Bug fix(#697) Description: Variable-length string wasn't treated as string. Solution: Added character set and padding into VL string type. Platforms tested: FreeBSD
* [svn-r5120] Purpose:Bill Wendling2002-03-2949-53/+0
| | | | | | | | | HDF4 Removal Description: There were some testfiles still left after we removed HDF4 from the HDF5 tree... Platforms tested: Linux
* [svn-r5118] Purpose:Bill Wendling2002-03-291-0/+3
| | | | | | Doc Change Description: Documented the fix for the 1024 byte object name limitation...
* [svn-r5113] Purpose:Albert Cheng2002-03-281-8/+74
| | | | | | | | | | | | | | | feature Description: Added -fsize <fsize> option which controls the family file size used. This can be used to test the file size limits of a machine or file system. Platforms tested: modi4 (passed even 20GB file size). Eirene (started to fail when 2GB is used. Expected since linux 2.2 does not support large than 2GB file size.) burrwhite (passed up to 4GB. Expected since Linux 2.4 supports larger than 2GB file size.) Then it failed at 4GB and beyond. This is probably a bug in the family file driver.
* [svn-r5112] Bill Wendling2002-03-283-56/+44
| | | | | | | | | | | | | | Purpose: Bug Fix Description: Parallel Fortran wasn't working on Modi4. The tests for parallel MPI Fortran were failing to find MPI files. Solution: Changed the AC_TRY_FLINK() macro so that libraries are included at the end of the link line so that unresolved symbols can be found... Platforms tested: Modi4
* [svn-r5111] ./hdf5-devel/test/stab.cRobb Matzke2002-03-281-34/+83
| | | | | Merge of name component length limit bugfix from 1.4 branch. A couple of very minor typos fixed.
* [svn-r5110] ./hdf5-devel/src/H5G.cRobb Matzke2002-03-281-16/+36
| | | | | Merge of name component length limit bugfix from 1.4 branch. A couple of very minor typos fixed.
* [svn-r5109] ./hdf5-devel/src/H5Fistore.cRobb Matzke2002-03-282-2/+2
| | | | | Merge of name component length limit bugfix from 1.4 branch. A couple of very minor typos fixed.
* [svn-r5108] ./hdf5-devel/src/H5B.cRobb Matzke2002-03-281-1/+1
| | | | | | | | Merge of name component length limit bugfix from 1.4 branch. A couple of very minor typos fixed. 2002-03-18 14:30:58 Robb Matzke <matzke@arborea.spizella.com> * H5B_assert: Fixed typos in comments.
* [svn-r5104] Bill Wendling2002-03-282-4/+4
| | | | | | | | | | | | | | | Purpose: Bug Fix Description: Hrm...When I was restoring the LDFLAGS variable after a failure, I fergot to put a $ on the saved_LDFLAGS variable during the assignment. DOH! Solution: Added the $. Platforms tested: Modi4
* [svn-r5103] MuQun Yang2002-03-281-0/+0
| | | | | | | | Purpose: add hdf5cpptest.bat in the all.zip Description: Solution: Platforms tested:
* [svn-r5102] MuQun Yang2002-03-271-0/+0
| | | | | | | | | | | | Purpose: rearrange project setting Description: by default, no c++ library or tests will be built. User will enable by checking dependencies by themselves to build c++ library. The old all.zip somehow build c++ libraries. Solution: correct it by disable c++ dependency. Platforms tested: windows 2000
* [svn-r5101] MuQun Yang2002-03-275-9/+18
| | | | | | | | | | | | | | | Purpose: fix a windows bug Description: 1. To create a >4GB file, fstati64 has to be used instead of fstat. change fstat to fstati64 for WIN32 macroes. Some discussions are going on the general issue on how to better handle with WIN32 or other similar platform. This check-in is just a reminder not to forget the windows bug. 2. erase a WIN32 macro(include winsock2.h) at h5detect.c. It is not a problem now. Solution: use fstati64 instead of fstat for win32. Platforms tested: windows2000(confirmed at linux machine eirene)
* [svn-r5100] Purpose:Bill Wendling2002-03-271-11/+32
| | | | | | | New Feature Description: Added support for the IBM PowerPC AIX architecture. Really just a copy of the RS6000 AIX config file...
* [svn-r5099] Purpose:Quincey Koziol2002-03-271-0/+2
| | | | | | Update release notes Description: Document H5Gget_objinfo() bug fix (fixes bug #732)
* [svn-r5097] Purpose:Quincey Koziol2002-03-272-1/+83
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: Regression test for following bug: The H5Gget_objinfo() function was not setting the 'fileno' field in the H5G_stat_t struct passed in. Solution: Added a "file serial number" to each file currently open in the library and put that in the 'fileno' field. If a file is opened twice (with H5Fopen) and the VFL driver detects that it is the same file (i.e. the two file structures have the same "shared file info" in the library's memory structures), they will have the same serial number. This serial number has two drawbacks: - If a VFL driver doesn't/can't detect that two calls to H5Fopen with the same file actually _are_ the same file, each will get a different serial number - If the same file is closed and re-opened, the serial number will be different. It is be possible to fix the second drawback for many VFL drivers, but it would be a lot of effort and probably isn't worth it until we've got a good reason to do it. Dunno if we'll ever be able to fix the first drawback... Platforms tested: FreeBSD 4.5 (sleipnir) VS: ----------------------------------------------------------------------
* [svn-r5096] Purpose:Quincey Koziol2002-03-276-5/+106
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: The H5Gget_objinfo() function was not setting the 'fileno' field in the H5G_stat_t struct passed in. Solution: Added a "file serial number" to each file currently open in the library and put that in the 'fileno' field. If a file is opened twice (with H5Fopen) and the VFL driver detects that it is the same file (i.e. the two file structures have the same "shared file info" in the library's memory structures), they will have the same serial number. This serial number has two drawbacks: - If a VFL driver doesn't/can't detect that two calls to H5Fopen with the same file actually _are_ the same file, each will get a different serial number - If the same file is closed and re-opened, the serial number will be different. It is be possible to fix the second drawback for many VFL drivers, but it would be a lot of effort and probably isn't worth it until we've got a good reason to do it. Dunno if we'll ever be able to fix the first drawback... Platforms tested: FreeBSD 4.5 (sleipnir) VS: ----------------------------------------------------------------------
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