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* [svn-r24887] Fix fortran mod file handling and packingAllen Byrne2014-03-241-4/+10
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* [svn-r24886] Fix fortran mod file handling and packingAllen Byrne2014-03-243-6/+60
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* [svn-r24876] Move includes command up before all programsAllen Byrne2014-03-241-2/+2
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* [svn-r24875] Description:Quincey Koziol2014-03-241-6/+2
| | | | | | | | Update with corresponding information that was changed in hl/src/H5Tanalyze.l in r24869. Tested on: Linux 2.6.32-431.5.1.el6.ppc64/64 (ostrich)
* [svn-r24869] Description:Quincey Koziol2014-03-2318-165/+148
| | | | | | | | | | | | | | | | | | | | | | | | | Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (too minor to require h5committest)
* [svn-r24867] Description:Binh-Minh Ribler2014-03-225-10/+16
| | | | | | | | | | - Added a null terminator to the comment returned from the C call, in getComment methods - Some minor cleanup Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) Linux/64 2.6 (platypus)/PGI compilers
* [svn-r24866] Fixed compiler warnings using gnu 4.8.1 Scot Breitenfeld2014-03-228-58/+65
| | | | Tested: jam( intel, gnu, pgi)
* [svn-r24865] Description:Binh-Minh Ribler2014-03-2111-61/+156
| | | | | | | | | | | - Added another overload for char* argument: ssize_t getComment(const char* name, const size_t buf_size, char* comment) - Changed default value to 0 for the other two getComment methods - Added HDmemset to after every char string allocation to clear the buffer Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) Linux/64 2.6 (platypus)/PGI compilers
* [svn-r24864] Description:Quincey Koziol2014-03-2197-4694/+444
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24859] Remove unnecessary use of $(srcdir).before_removing_mpiposix_vfdAllen Byrne2014-03-214-30/+11
| | | | Tested: local linux, h5committest
* [svn-r24857] --enable-threadsafe no longer requires --with-pthreads if ↵Dana Robinson2014-03-212-218/+200
| | | | | | | | | | | | | | | | Pthreads can be found in the standard include and library paths. Tested on: 32-bit LE linux (jam) SunOS 5.11 (emu) 64-bit Darwin 12.5 (kite) 64-bit FreeBSD 8.2 (freedom) Testing focused on making sure that Pthreads could be found on different platforms and investigating the interaction of Fortran/C++/thread-safe options.
* [svn-r24856] added missing common statementScot Breitenfeld2014-03-211-0/+1
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* [svn-r24855] added missing dllexportScot Breitenfeld2014-03-211-0/+1
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* [svn-r24851] example causes modal permission dialog to popup on windows. ↵Allen Byrne2014-03-202-5/+5
| | | | build but do not execute.
* [svn-r24850] example causes modal permission dialog to popup on windows. Do ↵Allen Byrne2014-03-201-2/+3
| | | | not build.
* [svn-r24849] Update to synch with latest cmakeAllen Byrne2014-03-201-1/+20
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* [svn-r24846] Bug fix for HDFFV-8689 : Mix-match of type in ↵Scot Breitenfeld2014-03-204-44/+57
| | | | | | H5D_CHUNK_CACHE_NBYTES_DEFAULT, Review HDF5-184 Tested with -i8 flag with intel compilers and --enable-production
* [svn-r24830] Purpose: HDFFV-8623Binh-Minh Ribler2014-03-184-26/+26
| | | | | | | | | | | | Description: Applied patch from user Jason Newton. JIRA issue HDFFV-8623, patch 9, improve c++ compatibility with exceptions. All additions of "throw()" are included. Exception::what() is not added because it is not necessary. It was suggested for the name, which follows stdlib. Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) Linux/64 2.6 (koala)/PGI compilers
* [svn-r24826] HDFFV-8700 -Allen Byrne2014-03-183-8/+10
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24824] HDFFV-8700 -Allen Byrne2014-03-1828-148/+246
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24822] Update GYGWIN versionAllen Byrne2014-03-181-1/+1
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* [svn-r24816] HDFFV-8695:Allen Byrne2014-03-173-26/+38
| | | | | Add notes about defining -DCMAKE_BUILD_TYPE:STRING=Release
* [svn-r24804] Description:Quincey Koziol2014-03-168-261/+229
| | | | | | | | | | | | | | | | | | | | | | | | Brought changes from Coverity branch back to trunk, and cleaned up misc. other warnings & formatting issues: r20833: Fixed Coverity 667 and 668 with real integer overflow tests this time. r20834: Use HDstrncpy and HDstrncat. --gh r20835: Change to use strncpy - use base_len + 1 for line 156, use HDstrlen(path) + 1 for line 159 r20836: Fixed coverity 585 by casting output of fgetc() to a char. r20837: Changed sprintf calls to snprintf with size 1 less than the allocated buffer to address coverity issue #967. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (too minor to require h5committest)
* [svn-r24803] Description:Quincey Koziol2014-03-1622-240/+103
| | | | | | | | | | | | Rename GCC_DIAG_OFF/ON macros to H5_GCC_DIAG_OFF/ON and move from src/H5private.h to src/H5public.h. Wrap typedef of hsize_t and hssize_t in DIAG_OFF(long-long) macros. Clean up a bunch of "macro '-' is unused" warnings. Tested on: Mac OSX/64 10.9.2 (amazon) w/gcc 4.8.2, C++, FORTRAN, parallel (too minor to require h5committest)
* [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-1341-44/+44
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* [svn-r24783] fixed typoScot Breitenfeld2014-03-121-1/+1
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* [svn-r24782] HDFFV-8700 -Allen Byrne2014-03-1144-513/+517
| | | | KitWare recommendations: Change CMake commands to lower case.
* [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-1189-4045/+4045
| | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* [svn-r24772] Description:Quincey Koziol2014-03-102-12/+24
| | | | | | | Correct some dynamically sized arrays that fail on Windows. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel
* [svn-r24770] Snapshot version 1.9 release 174HDF Tester2014-03-0913-26/+26
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* [svn-r24769] Description:Quincey Koziol2014-03-0719-401/+1382
| | | | | | | | | Check in Mohamad's changes to support collective I/O on point selections, along with some other minor cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial (h5committest forthcoming)
* [svn-r24757] Change assertion to condition check/error return. Should fix ↵Neil Fortner2014-03-032-3/+5
| | | | | | | | | | periodic assertion failure in fheap test (in test that is expected to fail cleanly). Fix type in H5detect.c Tested: ostrich, platypus (h5committest - jam and koala having issues)
* [svn-r24753] Snapshot version 1.9 release 173HDF Tester2014-03-0213-26/+26
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* [svn-r24744] Correct NSIS nameAllen Byrne2014-02-271-1/+1
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* [svn-r24742] Synchronize Apple bundle packaging with latest changes ↵Allen Byrne2014-02-278-9/+53
| | | | discovered during hdf-java work.
* [svn-r24741] HDFFV-8684: Change Package name depending on CDASH_LOCAL ↵Allen Byrne2014-02-272-8/+11
| | | | | | configuration variable. Tested: local linux
* [svn-r24739] Bug fix: HDFFV-8684Albert Cheng2014-02-261-6/+7
| | | | | | | | | | | | | h5committest failed in platypus because cmakehdf5 failed in installation because cmake generates a install-tarball based on incomplete version number (subrelease string is missing). Solution: Fixed $HDF5_PACKAGE_VERSION to contain the subrelease string. Fixed $HDF5_PACKAGE_VERSION_STRING to be the same as $HDF5_PACKAGE_VERSION. Tested: jam and platypus in both trunk and v18 branches because the current version number is trunk has a null sub-release and v18 has a non-null sub-release. That covers both grounds.
* [svn-r24727] Description:Quincey Koziol2014-02-211-12/+12
| | | | | | | | | Revert change of sprintf -> snprintf, due to failures on Windows. We'll need to figure out the correct course of action in the future. Tested on: MacOSX/64 10.9.1 (amazon) w/C++, FORTRAN (too minor to require h5committest)
* [svn-r24726] Description:Quincey Koziol2014-02-2015-230/+243
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revert some earlier usage of strncpy, which was incorrect. Bring Coverity changes from branch back to trunk: r20821: Use HDstrncpy. --gh (Fixed already, with strdup) r20822: (Not merged, incorrect use of HDstrncpy()) r20823: (Not merged, incorrect use of HDstrncpy()) r20824: Maintenance: Bug fix: addressed CID 666. Value stored at *expression_len should be used in the call to HD5packFstring to avoid overflow (and unnecessary arithmetic calculation and casting) r20825: Issue 642: Added check for error and handler with print to stderr and exit. r20826: Undo revision 20818, as that issue has already been fixed in the 1.8 branch and trunk (but not coverity branch) r20827: (Not merged, incorrect use of HDstrncpy()) r20828: Use HDstrncpy. --gh (Corrected use of strncpy()) r20829: Check return of H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0. Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) was successful and allow print. Otherwise filename and objname are not created. (init those to NULL) r20830: resolved coverity issues 939, 940, 941, 944, and 947. all were complaints about use of sprintf, and in all cases, the buffers used were large enough for all eventualities. Resolved issue by replacing calls to sprintf with calls to snprintf. r20831: Maintenance: Addressed CID 852 Replaced sprintf with snprintf r20832: Purpose: Fix valgrind issues with hl/examples/ex_image2 Description: Modified hl/examples/ex_image2 to free global "gbuf" before exit. Tested on: Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety (too minor to require h5committest)
* [svn-r24725] HDFFV-8629: h5repack will not attempt to remove UD filters. ↵Allen Byrne2014-02-203-162/+167
| | | | | | h5repack requires a check for UD filters that also must check if the filter can be dynamically loaded. This require a change in the library that checks for this. Tested: locally and reviewed
* [svn-r24724] Fix MPI linker flags with quotesAllen Byrne2014-02-201-1/+1
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* [svn-r24722] Set NSIS display nameAllen Byrne2014-02-181-0/+1
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* [svn-r24716] Snapshot version 1.9 release 172HDF Tester2014-02-1613-26/+26
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* [svn-r24715] Add Windows VS version for README.txtAllen Byrne2014-02-141-0/+2
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* [svn-r24713] Update Windows VS version for README.txtAllen Byrne2014-02-141-1/+7
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* [svn-r24709] rename H5V to H5VM since H5V is needed in the fastforward ↵Mohamad Chaarawi2014-02-1371-456/+451
| | | | | | | | | | | | project for view objects. The addition of view objects in the fastforward project is expected to be brough into the trunk sometimes in the future, which is why we need to make this change. Tested Manually on Jam and Ostrich. Tested with h5commitest - Koala with intel compilers failed, but nothing had to do with those changes. error on Koala: error while loading shared libraries: libirng.so
* [svn-r24706] Add to instructions for installAllen Byrne2014-02-131-0/+9
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* [svn-r24703] Add Binary README.txt file generationAllen Byrne2014-02-134-2/+86
| | | | Tested: local linux cmake
* [svn-r24700] Updated packaging process to align with latest hdf cmake standards.Allen Byrne2014-02-113-3/+19
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* [svn-r24698] Snapshot version 1.9 release 171HDF Tester2014-02-0913-26/+26
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