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* [svn-r22704] merge from trunk up to 22703.Mohamad Chaarawi2012-08-21123-2954/+3262
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| * [svn-r22703] Description:Dana Robinson2012-08-212-556/+541
| | | | | | | | | | | | | | | | Propagated Windows and POSIX correctness changes from SEC2 VFD to the MPI-POSIX VFD. Fixes HDFFV-8058. Tested on: jam w/ parallel and fortran enabled
| * [svn-r22700] Description:Dana Robinson2012-08-203-10/+44
| | | | | | | | | | | | | | | | Minor refactoring to extract managed object length determination. This makes the tiny, managed, and huge code work alike. Tested on: jam (very minor change, no need for full commit test)
| * [svn-r22697] Snapshot version 1.9 release 126HDF Tester2012-08-1915-31/+32
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| * [svn-r22694] Description:Dana Robinson2012-08-171-88/+74
| | | | | | | | | | | | | | Minor change to consolidate odd bitmasking due to an old bugfix. Tested on: jam (very minor change)
| * [svn-r22693] Add missing H5Tclose().Allen Byrne2012-08-171-1/+3
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| * [svn-r22691] Purpose:Jonathan Kim2012-08-161-2/+2
| | | | | | | | | | | | | | | | | | | | | | HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: This is additional fix due to daily build fail against previous r22684. Refer to the svn -r22684 log for previous details Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), cmake (jam)
| * [svn-r22684] Purpose: Jonathan Kim2012-08-1511-20/+103
| | | | | | | | | | | | | | | | | | | | | | | | Address HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: When comparing attribute data values with same type class but different size, the result was incorrect. It was due to the size difference and got truncated. Fixed to match up the smaller type size to big type size like what dataset does. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
| * [svn-r22681] Description:Quincey Koziol2012-08-1510-1071/+590
| | | | | | | | | | | | | | | | Clean up file driver property handling, along with some misc. warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.1, C++, FORTRAN & threadsafe (h5committest upcoming)
| * [svn-r22679] Changed H5O_copy_search_comm_dt_check() to use H5O_obj_class() ↵Vailin Choi2012-08-141-6/+10
| | | | | | | | | | | | to get object type instead of H5O_get_info(...TRUE...) saving time in traversing metadata. (This is part of the checkin to 1.8 branch #22677)
| * [svn-r22676] Changes needed to make the default free-list mapping from ↵Vailin Choi2012-08-1318-169/+708
| | | | | | | | H5FD_FLMAP_SINGLE to H5FD_FLMAP_DICHOTOMY.
| * [svn-r22674] Remove checks for filters are available because the h5dump ↵Allen Byrne2012-08-132-114/+14
| | | | | | | | | | | | tests never used the filters in the tests. "-H" option excludes data. HDFFV-8125
| * [svn-r22673] Add "_" to list of version separatorsAllen Byrne2012-08-131-1/+1
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| * [svn-r22670] Snapshot version 1.9 release 125HDF Tester2012-08-1214-30/+30
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| * [svn-r22668] Description:Quincey Koziol2012-08-115-38/+150
| | | | | | | | | | | | | | | | | | Have free space manager use temporary address space for storing the section info, until the file is flushed or closed. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.x, C++, FORTRAN & threadsafe (h5committest forthcoming)
| * [svn-r22666] Description:Quincey Koziol2012-08-117-181/+401
| | | | | | | | | | | | | | | | | | | | Merge "flush me last" & "flush me collectively" feature from the avoid_truncate branch back to the trunk. (To help enable allowing the free space section info to reside in temporary address space) Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.x, C++, FORTRAN & threadsafe (h5committest forthcoming)
| * [svn-r22657] Bug fix: previous commit has a mistake--it used the wrong type ↵Albert Cheng2012-08-091-1/+1
| | | | | | | | | | | | | | | | of return value of FAIL. The function type is a pointer. Fixed it by changing it to NULL. Tested: In remote machine ADA (aix).
| * [svn-r22651] fix a bug that would skip or include the parallel atomicity ↵Mohamad Chaarawi2012-08-092-11/+15
| | | | | | | | test with cmd arguments -o or -x
| * [svn-r22650] Allow second find_package call for legacy libraries (not ↵Allen Byrne2012-08-091-0/+8
| | | | | | | | cmake-configured)
| * [svn-r22646] Description:Quincey Koziol2012-08-0833-109/+168
| | | | | | | | | | | | | | | | | | Changes resulting from Klocwork static analysis tool, from Mark Miller @ LLNL (miller86@llnl.gov). Tested on: Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x (too minor to require h5committest)
| * [svn-r22642] Correct check for filters in tools testAllen Byrne2012-08-082-8/+29
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| * [svn-r22637] Remove legacy command to kill MPI processes on obj to obj testing.Allen Byrne2012-08-061-18/+9
| | | | | | | | Tested: Windows, jam, koala
| * [svn-r22633] Correct packaing infoAllen Byrne2012-08-061-5/+6
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| * [svn-r22631] Move executable statement to after declarationsAllen Byrne2012-08-061-2/+2
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| * [svn-r22629] Snapshot version 1.9 release 124Larry Knox2012-08-0514-30/+30
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| * [svn-r22627] Description:Quincey Koziol2012-08-0317-95/+179
| | | | | | | | | | | | | | | | | | Merge some of the changes on the plist_encode_decode branch back to the trunk. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
| * [svn-r22625] HDFFV-8111: h5diff compare file to itself - removed path shortcutAllen Byrne2012-08-0310-464/+217
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| * [svn-r22624] The cmake folder needed a local variable to not include a "." ↵Allen Byrne2012-08-031-5/+7
| | | | | | | | as one of the path components on windows.
* | [svn-r22623] merge from tunkMohamad Chaarawi2012-08-0284-1276/+1934
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| * [svn-r22622] Windows config is up one levelAllen Byrne2012-08-021-1/+3
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| * [svn-r22620] Add ${CMAKE_RUNTIME_OUTPUT_DIRECTORY} to default include_dirsAllen Byrne2012-08-022-23/+3
| | | | | | | | Correct cmake packaging names
| * [svn-r22618] Jonathan Kim2012-08-013-16/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: HDFFV-8003 - ph5diff (parallel h5diff): daily test failure on ember intermittently during non comparable test file comparison HDFFV-7755 - parallel h5diff : hanging on koala intermittently during non comparable test file comparison Description: non-comparable test intermittently hung on koala and ember, but not on jam. it didn't occur until -np reaches 4 or bigger. it occurred once out of many repeated attempts of the same test. There was a incorrectly (mistakenly?) duplicated code in MPI section which caused such hang in a certain condition. The test used more processes than other tests, which increased chance to trigger more undone processes, and such process could enter the incorrect code section and wait for wrong pair of send. it explains why it occurred intermittently according to machine condition and using a certain feature. Removed incorrect code which blocked correct code. Tested: some manually repeated test performed jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
| * [svn-r22617] Purpose:Jonathan Kim2012-08-0111-61/+174
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix for HDFFV-8107 testh5diff will fail if build/test in HDF5 source tree Description: This is sub-task for "HDFFV-8105 testh5diff.sh uses the wrong operator (-a) in an if statement." From the HDFFV-8105's update, h5diff test failed if build&test is performed in HDF5 source tree because 'cp' try to copy test files to self dir. It's addressed by skipping if cp's src dir and dest dir is same. Also this applied for all other tools under src/tools dir. No change to the CMakeLists.txt files because CMake cautions/demands that in-source builds be avoided. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), some manual tests as well
| * [svn-r22614] Revert heading of summary.Allen Byrne2012-07-301-1/+1
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| * [svn-r22611] Fixed: HDFFV-8013 H5LTget_attribute_string appears to not ↵Scot Breitenfeld2012-07-271-2/+7
| | | | | | | | | | | | close an object identifier Tested: gnu and intel (jam)
| * [svn-r22610] HDFFV-8055 H5TBdelete_record destroys data after the deleted rowScot Breitenfeld2012-07-272-2/+125
| | | | | | | | | | | | Added fix and test case. Tested: gnu and intel (jam)
| * [svn-r22608] Description:Quincey Koziol2012-07-2647-488/+689
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Switch propert list/class iteration from internal to external form of iteration, cleaning up and simplifying the code a bit. Bring other general improvements from plist_encode_decode branch back to trunk. Clean up many warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/gcc 4.7, debug and C++ & FORTRAN (too minor to require h5committest)
| * [svn-r22606] Correct typo from cut/pasteAllen Byrne2012-07-261-5/+4
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| * [svn-r22605] Skip test that require h5diff to compress when the DEFALTE ↵Allen Byrne2012-07-262-4/+42
| | | | | | | | filter is unavailable
| * [svn-r22604] cast void* to char* for calculationAllen Byrne2012-07-261-6/+6
| | | | | | | | Issue on windows
| * [svn-r22602] Allen Byrne2012-07-2513-729/+705
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| * [svn-r22601] Purpose: Fix HDFFV-5853Neil Fortner2012-07-2516-31/+155
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: When jumping out from between H5_BEGIN_TAG and H5_END_TAG macros using HGOTO_ERROR or HGOTO_DONE, the previous metadata tag is not reset on the dxpl. This could cause problems when, for example, calling H5Ocopy within an H5Literate callback. Added new HGOTO_ERROR_TAG and HGOTO_DONE_TAG macros which must be used in place of the above between H5_BEGIN_TAG and H5_END_TAG. Tested: jam, koala, ostrich (h5committest), durandal
| * [svn-r22599] FinHDF5 should be generated during build.Allen Byrne2012-07-242-1/+86
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| * [svn-r22598] BE machines have a different offset in STORAGE_LAYOUT then the ↵Allen Byrne2012-07-232-1/+24
| | | | | | | | | | | | | | | | LE machines. Use h5diff with -r to not report warnings. Tested: local with CMake and ostrich with shell script
* | [svn-r22612] add enum value for the VL classMohamad Chaarawi2012-07-273-0/+9
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* | [svn-r22603] set return value in H5RcreateMohamad Chaarawi2012-07-251-2/+2
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* | [svn-r22597] merge latest trunk inMohamad Chaarawi2012-07-2318-325/+2067
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| * [svn-r22594] Bug fix: HDFFV-8105Albert Cheng2012-07-222-4/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: The test command in COPY_TESTFILES_TO_TESTDIR used the wrong operator -a which means and. It is not sufficient to test mere existence as $tstfile could have been a directory or other non-file things. If the file is not readable, the $CP command would fail but its return code was not checked. Solution: Get rid of the test command and go ahead to $CP it and then check its returned code and report errors if detected. Tested; committested. (note that ostrick still failed on errors committed by other staff).
| * [svn-r22590] correct reference file location in runTest commandAllen Byrne2012-07-201-1/+1
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| * [svn-r22589] Change strto functions to the HD prefix versions.Allen Byrne2012-07-201-5/+5
| | | | | | | | Tested: local
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