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* [svn-r18564] Description:Quincey Koziol2010-04-155-14/+29
| | | | | | | | Clean up compiler warnings. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (too simple to require h5committest)
* [svn-r18563] I put a header in the output printout. No test is needed.Raymond Lu2010-04-151-0/+6
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* [svn-r18560] I added header for output print out. No test is needed.Raymond Lu2010-04-151-0/+7
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* [svn-r18559] I took out the dsets test because it's part of testhdf5 now.Raymond Lu2010-04-151-1/+0
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* [svn-r18551] Description:Scot Breitenfeld2010-04-132-0/+8
| | | | | | | | | | | | | | | | In order to compile stand-alone Fortran wrappers the following files need to be installed via make install: (1) From the source: trunk/fortran/src/H5f90i.h - defines the character type and includes the file H5f90i_gen.h (2) From the compiled source: trunk/fortran/src/H5f90i_gen.h - a generated file at hdf5 compile time relating the C types to the Fortran types for interoperability. Since these C/Fortran types need to match those used in generating h5cc and h5fc commands we include the files H5f90i_gen.h and H5f90i.h in the hdf5/include install directory when Fortran is enabled. the files are installed with the other fortran files in include and also removed when the installation is cleaned. Test: jam
* [svn-r18549] Updated missed configuration.Allen Byrne2010-04-131-2/+2
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* [svn-r18548] Description:Quincey Koziol2010-04-135-5/+5
| | | | | | | Minor cleanups to compile with PGI C compiler 10.x. Tested on: Linux 2.4/32 (jam) w/PGI 10.x C and F90 compilers
* [svn-r18547] Description:Quincey Koziol2010-04-121-1/+1
| | | | | | | Tweak assert statement to attempt to pacify RSQ compiler. Tested on: None, too minor - just eyeballed.
* [svn-r18545] Snapshot version 1.9 release 66HDF Tester2010-04-1114-29/+29
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* [svn-r18535] Purpose: Fix bug 1815Neil Fortner2010-04-084-38/+214
| | | | | | | | | | | Description: Attempting to copy an object with NULL references (all bytes zero) with the H5O_COPY_EXPAND_REFERENCE_FLAG flag set would cause a failure or an assertion (depending on whether it was in debug mode). Changed copy routine to detect NULL references (object and region) and avoid attempting to expand the reference in this case. Tested: jam, linew, amani (h5committest)
* [svn-r18532] Bug fix:Albert Cheng2010-04-071-1/+2
| | | | | | | | | | | | | | | When gcc is used in the AIX platform, it failed to compile tconfig.c because it does not recognize the __int64 type. The ibm-aix has the sizeof __int64=8 cached, as if all compilers supported this type. Solution: Removed the cached value for the sizeof __int64 so that during configure, gcc can report it does not support it and not to use it in the source code. Tested: NCSA Blue which is an AIX machine, using gcc or xlc compiler. (The gcc still have failure but is being fixed as separated bugs.)
* [svn-r18525] Description:Quincey Koziol2010-04-064-56/+80
| | | | | | | | | | | | | | | | | | | | | | Bring r18523 from metadata journaling "merging" branch to trunk: Bring metadata journaling branch into closer correspondence with trunk: extract data structure freeing routines from metadata cache client 'destroy' callbacks. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18520] Description:Quincey Koziol2010-04-065-37/+83
| | | | | | | | | | | | | | | | | | | | | | Bring r18519 from metadata journaling "merging" branch to trunk: Converge metadata_journaling branch and trunk: separate destroy routines for data structures from cache callbacks. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18516] Bug: Albert Cheng2010-04-051-1/+1
| | | | | | | | | | | | | | | | PGI v10.2 in Red Storm Qual complained about the H5_IS_API macro with the following message when -Mbounds is used: PGC-S-0053-Illegal use of void type The compiler did not like to treat the literal strings as arrays. The -Mbounds option is used when --disable-production is used. Solution: Casted all the literal to (char *). Tested: h5committest passed (linew is not quite completed yet.) Red Storm Qual passed with the fixed H5_IS_API macro though it has other failures later. Will be fixed in another batch.
* [svn-r18510] Updated project files to generate and link H5lib_settings.cAllen Byrne2010-04-053-6/+14
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* [svn-r18508] Snapshot version 1.9 release 65HDF Tester2010-04-0414-28/+28
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* [svn-r18505] Description:Quincey Koziol2010-04-023-8/+42
| | | | | | | | | | | | | | | | | | | | Move code to free superblock data structure into separate routine, in preparation for upcoming metadata journaling -> trunk merging. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode
* [svn-r18504] Description:Quincey Koziol2010-04-0211-48/+37
| | | | | | | | | | | | | | | | | | | | Streamline & cleanup data structure 'destroy' calls from metadata client destroy callbacks. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode
* [svn-r18502] Description:Quincey Koziol2010-04-025-55/+88
| | | | | | | | | | | | | | | | | | | | | Bring r18501 from metadata journaling "merging" branch to trunk: Extract data structure 'destroy' routines from metadata cache client 'destroy' callbacks. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18498] Description:Quincey Koziol2010-04-028-58/+167
| | | | | | | | | | | | | | | | | | | | | Bring r18497 from metadata journaling "merging" branch to trunk: Extract data structure 'destroy' routines from metadata cache client 'destroy' callbacks. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18494] Description:Quincey Koziol2010-04-0212-220/+374
| | | | | | | | | | | | | | | | | | | | | | | | Bring r18491 from metadata journaling "merging" branch to trunk: Extract data structure 'destroy' routines from metadata cache client 'destroy' callbacks. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18492] Bug fix:Albert Cheng2010-04-016-71/+49
| | | | | | | | | | | | | | | | | Testlibinfo.sh failed again. Solution: Removed the const from H5libhdf5_settings definition, again. Revamp the whole setting so that H5lib_settings.c is compiled individually, just like H5Tinit.c. Hope this will take care of the problem once for all. Tested: Jam using --disable-shared with --enable and --disable-embedded-libinfo. Will test this on the AIX platform after commit (cannot run bin/reconfigure in the AIX platform and it is too clumsy to try to ssh files back and forth and incurred "svn merge inconsistency" later too. Pretty confident this fix should work in all other platforms.
* [svn-r18484] Description:Quincey Koziol2010-04-015-24/+1
| | | | | | | | | | | | | | | | | | | | | | | Bring r18483 from metadata journaling 'merging' branch to trunk: Remove unused symbol table entry dirty flag Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18475] Description:Quincey Koziol2010-04-013-6/+3
| | | | | | | | | | | | | | | | | | Fix dependency issue and non-C99 coding goof. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18474] Description:Quincey Koziol2010-03-315-68/+106
| | | | | | | | | Switch back to generating a .h file for the library settings. Also, tart it up a bit to avoid multiple inclusions, etc. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug & production FreeBSD/32 6.3 (duty)
* [svn-r18469] bug fix:Albert Cheng2010-03-306-12/+16
| | | | | | | | | | | | | | recent changes to the embedded library generation code does not quite work for the AIX system. The strings command of AIX does not display the embedded library information be default. Solution: Changed the H5libhhdf5_setting[] to be an extern variable. Also removed the const qualifier so that strings can see the variable data. Tested: Blue-print (with embedded-libinfo enabled and disabled). Also tested in Jam.
* [svn-r18465] Snapshot version 1.9 release 64HDF Tester2010-03-2814-29/+29
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* [svn-r18460] Description:Quincey Koziol2010-03-2622-628/+548
| | | | | | | | | | | | | | | | | | | Fold metadata journaling changes into the trunk: mostly tweaky small stuff, also removed the H5F_t* field from the H5G_entry_t struct. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18457] Purpose:Jonathan Kim2010-03-254-1/+456
| | | | | | | | | | | | | | | | | | | | Add test cases for bug1797 - h5repack doesn't handle references in compound and vlen datatypes for attributes Description: Add test cases ahead as waiting for H5Acopy to complete the fix. 1. obj references in attr of compound type 2. region references in attr of compound type 3. obj references in attr of vlen type 4. region references in attr of vlen type NOTE: This test is skipped now and will be included when code part is completed. ( H5Acopy() replaces copy_attr() ) The file&code can be used for lib portion test. Tested: jam, amani, linew
* [svn-r18454] Purpose:Jonathan Kim2010-03-257-403/+701
| | | | | | | | | | | | Fix for the bug1726 - NPOESS: h5repack loses attributes for datasets of type H5T_REFERENCE. Description: include test cases. also test cases for attribute with object and region reference. Tested: jam, amani, linew
* [svn-r18449] Purpose:Jonathan Kim2010-03-251-3/+3
| | | | | | | | Resolve build issue on Sloaris due to white space from the previous checkin r18447 Tested: jam, amani , linew
* [svn-r18447] Purpose:Jonathan Kim2010-03-241-5/+15
| | | | | | | | | | | | Bug1727 - NPOESS: h5copy should copy region references Description: Tested and added test cases from previous checkin r18319 Reference Manual and tool's usage section for '-f ref' option is updated for more comprehensibility. Tested: jam
* [svn-r18445] Purpose: Fix bug 1637Neil Fortner2010-03-2410-133/+247
| | | | | | | | | | Description: Modified algorithm for extending a dataset with early allocation so it only deals with the new chunks. Formerly, it would loop over all chunks, checking to see if each existed in cache and on disk, causing major performance issues with large numbers of chunks. Tested: jam, linew, amani (h5committest)
* [svn-r18442] Purpose:Jonathan Kim2010-03-231-1/+2
| | | | | | | | | | | Resolve windows build issue from previous checkin r18425 Description: The previous checkin was for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Tested: jam
* [svn-r18438] Changed copy script to copy all *.h filesAllen Byrne2010-03-221-7/+1
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* [svn-r18432] Snapshot version 1.9 release 63HDF Tester2010-03-2114-29/+29
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* [svn-r18431] Added libsettings project to solution files.Allen Byrne2010-03-194-63/+92
| | | | Updated Manifest
* [svn-r18430] Add windows define BIND_TO_CURRENT_VCLIBS_VERSION=1 to project ↵Allen Byrne2010-03-19247-1833/+2232
| | | | | | | files. Corrected copy H5srcdir_str.h commands in script. Added libsettings project to behave like h5tinit.vcproj.
* [svn-r18425] Purpose:Jonathan Kim2010-03-186-6/+342
| | | | | | | | | | | | Fix for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Description: handles object reference to named-datatype as well. Add test cases. Tested: jam, amani, linew
* [svn-r18420] Description:Quincey Koziol2010-03-1814-159/+24
| | | | | | | | | Re-run bin/reconfigure to catch up with recent rearrangements, remove some unused srcdir headers and duplicated code in main test header. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod Linux/32 2.6 (jam)
* [svn-r18419] Description:Quincey Koziol2010-03-1831-61/+107
| | | | | | | | | Clean up srcdir querying code more, extracting it into single header file, to avoid compiler warnings. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod Linux/32 2.6 (jam)
* [svn-r18418] Description:Quincey Koziol2010-03-1812-496/+54
| | | | | | | | Centralize common code for srcdir lookups. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod Linux/32 2.6 (jam)
* [svn-r18417] Description:Quincey Koziol2010-03-181-0/+1
| | | | Add new file
* [svn-r18416] Description:Quincey Koziol2010-03-181-1/+0
| | | | | | | Fix error with srcdir header file included twice. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & production and C++
* [svn-r18415] Description:Quincey Koziol2010-03-187-109/+326
| | | | | | | | | | Move the libhdf5.settings information out of src/H5Tinit.c and into a separate header file (src/H5lib_settings.h), which is generated at build time (not configure time) with the src/H5make_libsettings generator program. Tested on: Linux/32 2.6 (jam) Mac OS X/32 10.6.2 (amazon)
* [svn-r18414] Description:Quincey Koziol2010-03-1711-0/+165
| | | | Add copyright to new files
* [svn-r18413] Description:Quincey Koziol2010-03-1750-320/+693
| | | | | | | | | | | | | | Unify srcdir handling for test executables and allow them to use the srcdir setting from configure time without requiring the 'srcdir' environment variable be set (although you still can, to override the built in setting). Attempted to get this right for Windows builds also. Also add dependency between src/H5Tinit.c and src/libhdf5.settings, so that the test/testcheck_version.sh script works correctly. Tested on: Linux/32 2.6 (jam) Mac OS X/32 10.6.2 (amazon)
* [svn-r18410] Fixed a typo in a message.Albert Cheng2010-03-171-1/+1
| | | | No test needed since it is in a message string.
* [svn-r18406] Snapshot version 1.9 release 62HDF Tester2010-03-1415-32/+32
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* [svn-r18404] Description:Frank Baker2010-03-121-1/+1
| | | | Update copyright date to 2010.
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