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* [svn-r14365] Add szip filter check of client data values for has_filters.Pedro Vicente Nunes2008-01-033-20/+19
| | | | | | NOTE: szip client symbols were made public Tested: windows, linux, solaris
* [svn-r14364] Description:Quincey Koziol2008-01-033-65/+83
| | | | | | | | | | | | | | | | | | | Avoid creating free space manager for fractal heap when just performing queries. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14363] Description:Quincey Koziol2008-01-036-1659/+1879
| | | | | | | | Refactor file space allocation routines into separate source module. Tested on: FreeBSD/32 6.2 (duty) in debug mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14362] Description:Quincey Koziol2008-01-0320-69/+163
| | | | | | | | | | | | | | | | | | Switched from "H5P[gs]et_latest_format" to "H5P[gs]et_format_bounds". Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14361] add a warning message in case a dataset cannot be created with ↵Pedro Vicente Nunes2008-01-021-1/+7
| | | | | | modified DCPL tested: linux
* [svn-r14360] New function has_filters (replace has_filters for each object ↵Pedro Vicente Nunes2008-01-024-334/+102
| | | | | | | | | and for global filters): verify if all requested filters in the array FILTER obtained from user input are present in the property list PID obtained from the output file. All the filter comparison of client data values is done here instead of the previous filtcmp TO DO: szip, nbit and scale offset NOTE: the symbol H5Z_SHUFFLE_TOTAL_NPARMS was made public Tested: windows, teragrid with icc 8.1, linux (kagiso), solaris (linew)
* [svn-r14359] Description:Quincey Koziol2007-12-242-7/+7
| | | | | | | | | Corrected a compiler warning in the local heap code. Fixed the shared message flag symbols from the recent switchover. Tested on: FreeBSD 6.2/32 (duty)
* [svn-r14358] Description:Quincey Koziol2007-12-237-87/+83
| | | | | | | | | | | | | | | | | | | Tweak the constants for the shared message flags to be equal to the other flags useds for the underlying messages. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14357] Description:Quincey Koziol2007-12-222-10/+44
| | | | | | | | | | | | | | | | | | | | Add a hack to the local heap code to resize the metadata cache when the heap block will be too large for the cache. This should be removed when the metadata cache handles "too large" object insertions (or resizes) correctly. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14356] Description:Quincey Koziol2007-12-203-77/+58
| | | | | | | | | | | | | | | | | | | Refactor work for bug #956 to simplify a bit and to cover some corner cases. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14355] uncomment previously commented code regarding nbit and ↵Pedro Vicente Nunes2007-12-202-57/+92
| | | | | | | | scale-offset filter adding changed the logic of the filter compare function to first compare filter type, then filter client data values (separate here in each individual case, since some filters return private filter values. Todo: handle the nbit and scale-offest cases) tested: windows, linux
* [svn-r14354] Bug fix for #956 where the element coordinates went wrong for ↵Raymond Lu2007-12-209-4/+471
| | | | | | | | dataspace selection. Added a test for it, too. This round of checkin isn't well tarnished yet. I'll come back to work on Jan. 8. I'll revise it then. Tested it on kagiso, smirom, linew.
* [svn-r14353] Description:Quincey Koziol2007-12-2014-563/+775
| | | | | | | | | | | | | | | | | | | | | | | | | - Add hash value for skip list string types, to reduce # of string comparisons. - Fixed bug with metadata/small data block aggregator adding size == 0 block into file free space list. - Refactored metadata/small data block aggregator code into single set of common routines. - Changed block aggregator code to be smarter about releasing space in the 'other' block when the 'other' block has aggregated enough data. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14352] Maintenance: Fixed a typo in the build scriptElena Pourmal2007-12-181-1/+1
| | | | Platforms tested: VMS server
* [svn-r14350] Maintenance for VMS system: brought up-to-date h5repack testing ↵Elena Pourmal2007-12-173-55/+70
| | | | | | | | script and updated build file Platforms testeda VMS server:
* [svn-r14346] New feature: has_filters_obj function that checks if filters ↵Pedro Vicente Nunes2007-12-145-18/+134
| | | | | | | | | | | | | | | | | | | | match for each individual dataset Following the new feature of h5repack to allow multiple filters for all datasets and the new function has_filters that checks if the repacked file has all the filters requested, I added a new function has_filters_obj that does the same for each dataset. The previous function that checked this only ckecked if the user input filters were in the output dataset. This new function does this but checks if the filters are exactly the same. Currently the behavior of h5repack is to delete all filters that are present in the input file (dataset) and replace them with the requested ones, so they must match exactly. We might consider adding other logical operations, like keep the existing ones. Additionally , the function also checks if the filter parameters match. While doing this I noticed that for the shuffle filter , the values returned do not match and also the same for the N-bit and scale-offset The new function that checks for the filter values fails then, and so I commented the h5repack tests that do this for the N-bit and scale-offset filter (previously for the same bug on the shuffle filter I added special code on the compare filter function but this is temporary until I find the issue) tested: windows, linux, solaris
* [svn-r14345] substituted the symbol CD_VALUES , number of filter client data ↵Pedro Vicente Nunes2007-12-143-6/+8
| | | | | | | | values, for H5Z_COMMON_CD_VALUES that is defined in the library tested: windows, linux, solaris
* [svn-r14344] Maintenance on VMS system: updated testscript for h5diff and ↵Elena Pourmal2007-12-133-299/+73
| | | | | | removed obsolete command file Platforms tested: VMS server
* [svn-r14343] Maintenance for VMS: added more tests to the command file for ↵Elena Pourmal2007-12-133-206/+86
| | | | | | | | h5dump testing modified the file to save output into h5dump_output.txt file removed obsolete test script file check.com update MANIFEST to refelect the change
* [svn-r14342] change the implementation of H5IMmake_image_8bit to use a 2D ↵Pedro Vicente Nunes2007-12-134-10/+1
| | | | | | dataset tested: windows, linux solaris w/fortran
* [svn-r14341] Maintenance for VMS system: VMS C++ compiler expects 'cxx' ↵Elena Pourmal2007-12-131-2/+2
| | | | | | | | | | extensions. Used copy command instead of rename to get the correct names of the C++ source files to avoid errors when build runs second time in the same directory. Platforms tested: VMS server
* [svn-r14340] Maintenance for VMS system:Elena Pourmal2007-12-139-8/+51
| | | | | | | | | | | | | | | | | Skip one of the tests in flush2.c since it looks like VMS system flsuhes the file anyway (like on Winodws with DLLs) Renamed files family*.h5 that are used in backward compatibility testing to have only one '.' in a file name, otherwise VMS system becomes confused and test fails. Cleaned up the only test (Fortran multi-file test) that is failing on VMS (C counterpart passesa). Added new script to facilitate the build process on VMS Updated MANIFEST PLatforms tested: VMS server, kagiso and linew (minor changes)
* [svn-r14339] bug fix: aligned a line in usage that was not alignedPedro Vicente Nunes2007-12-122-2/+2
| | | | tested: linux
* [svn-r14338] Maintenance: Cleaned up system warnings for the install.com scriptElena Pourmal2007-12-111-9/+6
| | | | Platforms tested: VMS server
* [svn-r14337] Maintenance: Added new install.com file to the list of files.Elena Pourmal2007-12-111-0/+1
| | | | Platforms tested: ran bin/chkmanifest script on kagiso
* [svn-r14336] Maintenance/VMS port: added new command file to install C, ↵Elena Pourmal2007-12-116-77/+224
| | | | | | | | Fortran and C++ libraries and corresponding examples; modified some command files to check installation. Platforms tested: VMS server
* [svn-r14335] Corrected the comment on line 219: hard -> softH. Joe Lee2007-12-111-1/+1
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* [svn-r14334] Description:Quincey Koziol2007-12-105-114/+188
| | | | | | | | | | | | | | | | | | | | | | | | | - Avoid trying to update 1-D dataset's chunk indices (they can't change) - Cache a copy of a dataspace describing a chunk, when doing single element I/O - Keep a 'chunk info' struct around, for single element I/O - Avoid creating a skip list for chunk infos when performing I/O on single element Also, minor formatting cleanups to testing code Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14333] fix typo in commentPedro Vicente Nunes2007-12-101-1/+1
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* [svn-r14331] Purpose: Update Windows h5ls test scriptScott Wegner2007-12-101-16/+6
| | | | | | | | Details: We no longer need to parse the h5ls output to remove "Modified" tags. This makes it much easier to test on Windows, because we don't need to emulate `sed`. Tested: VS2005 on WinXP
* [svn-r14327] Maintenance for VMS: brought command file up-to-dateElena Pourmal2007-12-061-3/+3
| | | | Platforms tested: VMS server at Boeing.
* [svn-r14326] Description:Quincey Koziol2007-12-0613-208/+299
| | | | | | | | | | | | | | | | | | | | | | | | - Keep skip list for tracking chunks with dataset (instead of creating/ destroying it for each I/O operation) and just delete the skip list nodes. - Avoid computations for normalizing selection offset when offset not set. - Avoid updating object modification time twice during dataset creation. - Avoid updating dataset layout message (and object modification time) until dataset is closed. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14325] Eliminate unwanted output and remove superfluous sed script. ↵Larry Knox2007-12-061-3/+4
| | | | Tested on kagiso, linew, and smirom.
* [svn-r14324] bug fix: #786 (E3) h5dump refers to the user block as "boot block"Pedro Vicente Nunes2007-12-062-5/+5
| | | | | | replaced usage message with "super block" tested: linux
* [svn-r14320] Added a function that matches the filters on the dataset's DCPL ↵Pedro Vicente Nunes2007-12-045-70/+291
| | | | | | | | and in the requested list Used to verify if the filters requested are present in the output dataset tested: windows, linux, solaris
* [svn-r14319] Purpose: Update error handling in h5ls, uncomment testScott Wegner2007-12-041-30/+34
| | | | | | | | Description: Larry was able to track down the bug in the h5ls test script and change it around to check for an expected error code for each test. With this, we are now able to uncomment the broken test on Windows. Tested: VS2005 on WinXP
* [svn-r14318] Check error code of h5ls call as well as expected output. ↵Larry Knox2007-12-031-25/+30
| | | | Tested kagiso linew smirom.
* [svn-r14317] code maintenance: code cleaning and reorganizing of the ↵Pedro Vicente Nunes2007-12-032-364/+382
| | | | | | h5repack verify routines tested: windows, linux
* [svn-r14316] Purpose: Update test directories in MinGW documentationScott Wegner2007-12-031-1/+3
| | | | | | | | Description: There are many tests that are unsupported on MinGW because of the way it handles certain syntax in shell scripts (particularly '/'). As a result, we list a few tests that users must comment out in various Makefile.in's. This checkin updates the location of h5stat-- it was formerly in ./tools/misc, but has been moved it ./tools/h5stat. Tested: MinGW on WinXP
* [svn-r14315] Purpose: Update Windows h5repack test scriptScott Wegner2007-12-031-1/+22
| | | | | | | | Description: Added new test for long switch names, which was added to the general test script a few days ago. Tested: VS2005 on WinXP
* [svn-r14312] Added support of Albert Cheng2007-11-291-4/+16
| | | | | | | | -fortran: add --enable-fortran -cxx: add --enable-cxx -pp: add --enable-parallel Tested: Kagiso (serial and parallel).
* [svn-r14311] enhancement: change the usage example for multiple filtersPedro Vicente Nunes2007-11-291-2/+2
| | | | | | to note that SHUF should be used before GZIP and that the order specified in command line is the order filters are applied tested: windows, linux
* [svn-r14310] error check in command line: check for a wrong input of the 2 ↵Pedro Vicente Nunes2007-11-291-0/+8
| | | | | | file names being the same tested: windows, linux
* [svn-r14309] bug fix: add a check for the presence of a filter in the call ↵Pedro Vicente Nunes2007-11-291-4/+15
| | | | | | | | to test of long swtich names add a test for multiple global filters tested: linux, solaris
* [svn-r14308] new feature test: add a test for the long switch namesPedro Vicente Nunes2007-11-291-1/+9
| | | | tested: linux, solaris
* [svn-r14307] Description:Quincey Koziol2007-11-299-256/+542
| | | | | | | | | | | | | | | | | | | | | | | | - Extracted common code from H5D_select_read/H5D_select_write into single routine (H5D_select_io) and made H5D_select_read/H5D_select_write "gateway" routines, passing I/O buffer to operate on in "op" struct. - Create optimized pathway in H5D_select_io for I/O operations on single elements. - Make "get linear offset of first element" callback for each type of selection (used in "optimized pathway", above) Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14306] Description:Quincey Koziol2007-11-295-129/+125
| | | | | | | | Add call to reset cached chunk info after initialization of chunk data storage. Tested on: Linux/64 2.4(smirom) w/parallel
* [svn-r14305] updated commentsPedro Vicente Nunes2007-11-291-0/+2
| | | | tested: windows, linux
* [svn-r14304] change feature: rename compression used as %Savings Pedro Vicente Nunes2007-11-291-5/+3
| | | | | | | | | | | now the minus sign shows there was a DECREASE in compression percentage is calculated from per = (b-a)/a; where a= size of dataset before b = size after tested: windows, linux
* [svn-r14303] Purpose: Update h5ls test script on Windows.Scott Wegner2007-11-291-2/+7
| | | | | | | | Description: The h5ls test script was recently updated on Linux. This makes the same changes on Windows. Also, we had to comment out one of our tests, because h5ls returns an error-code that is giving false-positives. Tested: VS2005 on WinXP
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