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* [svn-r23237] Purpose: Implement H5Dscatter and H5DgatherNeil Fortner2013-02-082-4/+24
| | | | | | | | | | | Description: Adds 2 new API functions, H5Dscatter and H5Dgather. H5Dscatter retrieves data from a specified callback function and scatters it into a selection, defined by a supplied dataspace, within a supplied memory buffer. H5Dgather gathers data from a selection within a supplied memory buffer and passes it in a contiguous form to a supplied callback function. Added tests for these functions Tested: jam, ostrich, koala (h5committest); ummon
* [svn-r23236] Fix for: HDFFV-8223Scot Breitenfeld2013-02-082-2/+353
| | | | | | Write a Fortran test for conversion fron enum to numeric type Tested (jam, gnu, intel)
* [svn-r23235] Fix for:Scot Breitenfeld2013-02-081-6/+4
| | | | | | | HDFFV-7909 When building with g95 on Mac OS X 64-bit, the wrong options (gfortran) are used Tested: duck (gfortran, g95 (which is not supported))
* [svn-r23234] Fix out-of-bounds errors on pgcc for H5Dscatter and H5Dgather ↵Neil Fortner2013-02-071-10/+10
| | | | | | tests. Tested: jam (pgcc), ummon (gcc)
* [svn-r23230] Purpose: Implement H5Dscatter and H5DgatherNeil Fortner2013-02-055-1/+1229
| | | | | | | | | | | Description: Adds 2 new API functions, H5Dscatter and H5Dgather. H5Dscatter retrieves data from a specified callback function and scatters it into a selection, defined by a supplied dataspace, within a supplied memory buffer. H5Dgather gathers data from a selection within a supplied memory buffer and passes it in a contiguous form to a supplied callback function. Added tests for these functions Tested: jam, ostrich, koala (h5committest); ummon
* [svn-r23228] Purpose: Jonathan Kim2013-02-051-1/+1
| | | | | | | | | | | Revert back one of the coverity updates from previous checkin. "r20457: Coverity issue 691" in previous svn log. Only revert the change about using "STDOUT_FILENO". Description: Using "STDOUT_FILENO" caused error on Windows. On unix it's defined in <unistd.h>, but not in Windows. After a little discussion with Allen, he remembered how the similar case were handled for h5dump redirecting those streams. (in h5dump.c) However it would requires more attention to apply, so this issue is entered as a separate task in jira HDDFV-8306. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE)
* [svn-r23227] HDFFV-8215 - update help text to be cosistent with the RM entry.Allen Byrne2013-02-056-12/+12
| | | | Tested: local linux
* [svn-r23226] HDFFV-8285: suppress-ddl option: Changed file options to allow ↵Allen Byrne2013-02-0413-41/+48
| | | | | | for filename F to be optional. Tested: local linux
* [svn-r23223] Description:Quincey Koziol2013-02-041-4/+4
| | | | | | | | | Revert use of snprintf() for sprintf(), as it is not supported on Windows. (And file a bug, http://jira.hdfgroup.uiuc.edu/browse/HDFFV-8302, for the general problem) Tested: Mac OSX/64 10.8.2 (amazon)
* [svn-r23221] Snapshot version 1.9 release 142HDF Tester2013-02-0313-26/+26
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* [svn-r23219] Description:Quincey Koziol2013-02-0212-604/+623
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring reviewed changes from Coverity branch back to trunk (QK & JK): r20457: Coverity issue 691: return of H5duo could be negative. Fixed by using STDOUT_FILENO and redesign parse_command_line and main to cleanup file allocations. The output_file var is null when using stdout. In cleanup do not close output_file if NULL. r20510: Initialize ufid = -1 and predicate HDclose call on ufid != -1 r20511: Purpose: Fix coverity issue 1715 Description: Free "file" and nested data on failure in H5FD_core_open. r20512: Initialize ifid = -1 and predicate HDclose call on ifid != -1 r20514: Initialize h5fid = -1 and predicate HDclose call on h5fid != -1 r20516: Added else branch to the if (ret_value < 0) check. r20522: Addressed coverity issues 930-933, 850, 836, 835, 1307. All minor potential buffer overwrite bugs, or coverity errors. Fixed by replacing strcpy and sprintf with strncpy and snprintf. r20523: fixed coverity issues 68, 1120, 1116i r20524: Check H5Z_SZIP->encoder_present < 1 assuming 0 represents absence. r20601: Purpose: Fix coverity issues 1703-1705 Description: Modified the cleanup code in test_free in accum.c to reset allocated buffers to NULL after they are freed, and modified the error cleanup code to check if these buffers are NULL before freeing them. Also fixed some unrelated warnings in accum.c. r20602: Use HDsnprintf and HDstrncat r20603: Purpose: Fix coverity issues 808-809 Description: Modified test_core in vfd.c to check the returns from malloc, and keep track of whether points and check are allocated by setting them to NULL when they are not. Added code to free points and check on error if they are not NULL. Also fixed unrelated warnings in vfd.c. r20604: Use HDstrncpy. r20605: Use HDstrncpy and HDstrncat. r20606: Purpose: Fix coverity issue 807 Description: Modified long_compact in stab.c to keep track of whether objname is allocated by setting it to NULL when it is not. Added code to free objname on error if it is not NULL. r20607: Changed string function calls to use versions that specify the string length to fix coverity issues 832 and 839. Tested on: Mac OSX/64 10.8.2 (amazon) (Too minor to require h5committest)
* [svn-r23217] add scalr vlen string datasetsPeter Cao2013-01-311-48/+63
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* [svn-r23216] Add newline for special case of only raw data to stdoutAllen Byrne2013-01-313-4/+9
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* [svn-r23209] Change "diff -b" to just "cmp" for tests. diff is for text ↵Allen Byrne2013-01-311-4/+4
| | | | files and the ddl redirect does not have an ending newline.
* [svn-r23208] adding a large compound dataset to the test filePeter Cao2013-01-301-27/+70
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* [svn-r23207] add the new test file to the list.Peter Cao2013-01-301-0/+2
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* [svn-r23206] minor fixes for number of attributes to be created.Peter Cao2013-01-301-27/+38
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* [svn-r23205] correct a typo in the instruction.Peter Cao2013-01-301-1/+1
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* [svn-r23204] Update help information.Peter Cao2013-01-301-1/+2
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* [svn-r23203] Add test program to generate test file for checking performance.Peter Cao2013-01-301-0/+528
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* [svn-r23202] Add another warning to ignore listAllen Byrne2013-01-291-0/+1
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* [svn-r23201] Correct option textAllen Byrne2013-01-291-2/+2
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* [svn-r23198] Remove -q option from diff as some OS do not support it.Allen Byrne2013-01-241-1/+1
| | | | Tested: local linux
* [svn-r23197] prints out what and where the log files are.Albert Cheng2013-01-231-4/+26
| | | | Set it NOT to submit result to the CDASH.
* [svn-r23196] I changed the call to H5P_object_verify to H5I_object as the ↵Raymond Lu2013-01-231-3/+3
| | | | | | header file H5Iprivate.h is included but not H5Pprivate.h. Tested on jam.
* [svn-r23195] Compares without end of file newlinesAllen Byrne2013-01-231-2/+2
| | | | Tested: duck
* [svn-r23193] Rename ddl export file and force file write on copy for windows.Allen Byrne2013-01-234-6/+6
| | | | Tested: local linux
* [svn-r23190] HDFFV-8285: Add suppress ddl option.Allen Byrne2013-01-2222-270/+519
| | | | Tested: local linux
* [svn-r23185] Comment out unimplemented testsAllen Byrne2013-01-221-25/+27
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* [svn-r23184] Addition of cmakehdf5.Albert Cheng2013-01-221-0/+3
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* [svn-r23180] Snapshot version 1.9 release 141HDF Tester2013-01-2013-26/+26
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* [svn-r23178] Comment out unimplemented testsAllen Byrne2013-01-181-4/+4
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* [svn-r23177] Adjust mkdir to create all dependent foldersAllen Byrne2013-01-183-3/+3
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* [svn-r23176] Separate testfiles into subdirs of TestDir to avoid parallel ↵Allen Byrne2013-01-184-150/+232
| | | | | | test errors trying to copy a reference file over when already in use. Tested: local linux
* [svn-r23175] Comment out uncommitted tests.Allen Byrne2013-01-181-24/+24
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* [svn-r23174] Correct list itemsAllen Byrne2013-01-171-5/+5
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* [svn-r23173] export files must be handled differently on windowsAllen Byrne2013-01-171-30/+46
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* [svn-r23170] Switch script to copy files to TESTDIR and executeAllen Byrne2013-01-161-11/+15
| | | | Tested: h5committest
* [svn-r23169] HDFFV-8169: String binary dump test scriptsAllen Byrne2013-01-162-4/+57
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* [svn-r23168] HDFFV-8169: String binary dump testfilesAllen Byrne2013-01-163-0/+4
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* [svn-r23167] Removed the working in Jam only statement since it works for ↵Albert Cheng2013-01-161-10/+0
| | | | | | all THG unix platforms except Linew (SunOS).
* [svn-r23166] Comment out redirect-ddl tests - incompleteAllen Byrne2013-01-152-28/+28
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* [svn-r23165] HDFF-8203 Break H5FDmpi.h header into public and private componentsMohamad Chaarawi2013-01-157-65/+46
| | | | | | https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8203 tested: h5committest
* [svn-r23164] HDFFV-8285: H5dump suppress ddl option test scriptAllen Byrne2013-01-151-7/+89
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* [svn-r23163] HDFFV-8285: H5dump suppress ddl option testfile additionsAllen Byrne2013-01-1510-0/+1744
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* [svn-r23162] synchronized DECTRIS branch (r23161) with the trunkRaymond Lu2013-01-1420-55/+2321
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| * [svn-r23161] ported revisions 23146:23160 from the trunkRaymond Lu2013-01-1456-77/+179
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| * [svn-r23152] I took out the obsolete function H5PSIwrite_chunk and its ↵Raymond Lu2013-01-119-1131/+37
| | | | | | | | | | | | related test and performance test. Tested on koala.
| * [svn-r23149] I put more condition checks with macro when DEFLATE filter is ↵Raymond Lu2013-01-103-5/+40
| | | | | | | | | | | | disabled. Tested on koala.
| * [svn-r23148] I added the macro condition check for the test of direct chunk ↵Raymond Lu2013-01-091-0/+2
| | | | | | | | | | | | write as it uses compress2 function. Tested on koala.
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