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* [svn-r13096] Description:Quincey Koziol2007-01-028-160/+160
| | | | | | | | Fix updating values of shared attributes in dense storage & add test. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13095] Description:Quincey Koziol2007-01-022-7/+52
| | | | | | | | | Minor edits on the way to testing writing to shared attributes in dense storage. Tested on: Mac OS X/32 10.4.8 (amazon) Too minor to require h5committest
* [svn-r13094] Purpose: Adding new test fileBinh-Minh Ribler2007-01-021-0/+1
| | | | | | | | Description: Added ./c++/test/tvlstr.cpp Tested: Checked with bin/chkmanifest
* [svn-r13093] Purpose: Adding testBinh-Minh Ribler2007-01-025-5/+809
| | | | | | | | | | Description: Added variable-length string tests. Platforms tested AIX 5.1 (copper) SunOS 5.8 64-bit (sol) Linux 2.6 (kagiso)
* [svn-r13092] Purpose: MaintenanceBinh-Minh Ribler2007-01-024-7/+38
| | | | | | | | | | | Description: Added overloaded method DataSet::vlenReclaim, that has better prototype. Fixed some typos. Platforms tested AIX 5.1 (copper) SunOS 5.8 64-bit (sol) Linux 2.6 (kagiso)
* [svn-r13087] Added a small test to check that SOHMs work fine when using ↵James Laird2006-12-222-4/+111
| | | | | | external links. They do. Tested on smirom, kagiso, and Windows.
* [svn-r13086] Added deletion test for shared messages. I'm not sure that ↵James Laird2006-12-226-13/+444
| | | | | | | | | | | this test is as complete as it could be, so I may add to it later. Fixed a bug in reference counting messages that are referenced by shared messages (attribute datatypes and dataspaces). Tested on mir, smirom, and Windows.
* [svn-r13085] Yesterday's checkin wasn't a complete fix for copying filters ↵James Laird2006-12-212-10/+56
| | | | | | | | in DCPLs. Extended the test so it broke again and then fixed it again. Tested on kagiso.
* [svn-r13084] Fixed a bug that occurrs when copying DCPLs with filters that ↵James Laird2006-12-202-0/+64
| | | | | | | | | | have filter data. Added a regression test for this bug. Tested on kagiso.
* [svn-r13083] Description:Elena Pourmal2006-12-202-16/+16
| | | | | | | | | | VMS maintenance: updated command file with the new source files; sohm test was failing on VMS due to upper case/lower case letters in constant and variable names (i.e. FILENAME vs. filename); modified the test to avoid confusion. Platforms tested: VMS server, kagiso
* [svn-r13082] Purpose: Code cleanupBinh-Minh Ribler2006-12-201-2/+2
| | | | | | | | | Description: Changed from hsize_t to int for rank constants to fix errors on Windows. Platform tested: Linux 2.6 (kagiso) Visual 6.0 on Windows XP
* [svn-r13081] Updated libary project files.MuQun Yang2006-12-202-0/+60
| | | | | | test_cpp didn't pass compiling. C and Fortran are fine. Compilers: VS 6.0 Compaq Visual fortran 6.6c.
* [svn-r13080] Description:Elena Pourmal2006-12-203-48/+66
| | | | | | | | | | | | | Maintenance for the HPUX 11.23 platform. Problem: C++ shared libraries are not supported for the 64bit mode (+DD64 compiler flag) Solution: Disable shared C++ library when +DD64 flag is detected. Platforms tested: sirius (HPUX 11.23 at UMKC) and kagiso
* [svn-r13079] Description:Quincey Koziol2006-12-1915-156/+713
| | | | | | | | | | | | | | | | | | Add more tests for checking that writing to shared attributes works correctly. (Looks like it still has a bug when dense storage is used, which I'll correct shortly). Add testing routine to shared message code, to retrieve reference count for a shared message. Add fractal heap 'op' callback for efficiently computing the hash value of an existing encoded message in the shared message fractal heap. Various minor cleanups and warning placations. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13078] Pedro Vicente Nunes2006-12-191-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | one more fix related to bug 551. the printing of the subsetting parameters was not using the new hsize_t printing format correct output is now [pvn@kagiso ad]$ /home1/pvn/build_hdf5/tools/h5dump/h5dump -d /a -s "0,8899716890" -c "1,10" jasp_char.h5 HDF5 "jasp_char.h5" { DATASET "/a" { DATATYPE H5T_STD_I8LE DATASPACE SIMPLE { ( 20, 8899716900 ) / ( 20, 8899716900 ) } SUBSET { START ( 0, 8899716890 ); STRIDE ( 1, 1 ); COUNT ( 1, 10 ); BLOCK ( 1, 1 ); DATA { (0,8899716890): 1, (0,8899716891): 1, (0,8899716892): 2, (0,8899716893): 2, (0,8899716894): 3, (0,8899716895): 3, (0,8899716896): 4, (0,8899716897): 4, (0,8899716898): 5, (0,8899716899): 5 } } } }
* [svn-r13077] HDF5 library project updates due to the adding of new source code.MuQun Yang2006-12-192-0/+30
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* [svn-r13076] Pedro Vicente Nunes2006-12-193-4/+10
| | | | | | | | | | | | | | fix for bugzilla bug #551 several programming errors contributed to this bug 1) the parsing of subsetting was using atoi to convert the parameter to an int, which caused problems for numbers greater that int. Substitute with atof 2) several index counters were declared as int, use hsize_t instead 3) the numerical format passed for printf was %lu, defined one compatible with hsize_t instead (unsigned long long)
* [svn-r13075] Description:Quincey Koziol2006-12-194-1667/+1667
| | | | | | | | Fix display order of attributes. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13074] Description:Quincey Koziol2006-12-1916-462/+948
| | | | | | | | | | | | | | | | | Add support for opening attributes in dense and/or shared storage by index. Move routines for building and operating on tables of attributes into separate source module. Fix bug where reverting from "dense" to "compact" storage would 'unshare' attributes. Minor code cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13073] Description:Quincey Koziol2006-12-183-18/+17
| | | | | | | | Verify H5Aget_num_attrs() works correctly for new object header format. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13072] Description:Quincey Koziol2006-12-186-83/+207
| | | | | | | | | Push support for shared attributes into more dark corners of the "dense" attribute storage support. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13070] Added shared message example program in hdf5/examples.James Laird2006-12-185-5/+332
| | | | | | Also cleaned up one old API routine in H5Ppublic that isn't used. Tested on smirom and kagiso. More testing to follow.
* [svn-r13068] Ran bin/reconfigure. Some of the scripts have been changed or ↵James Laird2006-12-1862-462/+470
| | | | | | | | | haven't been run in a while, so many of the source files were updated with tracing macros, etc. No code changes by me. Tested on kagiso and smirom.
* [svn-r13067] Description:Quincey Koziol2006-12-187-22/+419
| | | | | | | | | | | | | | Add [quite] limited ability to update (ie. write) data for objects in fractal heap. Limited to just updating objects in managed heap blocks (i.e. not 'tiny' or 'huge' objects) and must be updated with data of the same length as the object in the heap. Updating objects in compressed heaps does work though [as long as the data isn't 'tiny' or 'huge']. Needed for changing the data value or the name of an attribute that is stored in dense or shared storage. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13065] Added support for copying shared messages (including turning ↵James Laird2006-12-1517-332/+498
| | | | | | | | | | | | unshared messages to shared messages and vice versa). Extended objcopy test to test all "permutations" of shared/unshared and new/old group format. If this proves to take a long time to test, I'll go back and have it run fewer tests when HDF5_TEST_EXPRESS is enabled. Tested on smirom, kagiso, copper, and Windows.
* [svn-r13064] Pedro Vicente Nunes2006-12-1418-381/+566
| | | | | | | | | | | | | | | | | | | Fix several bugs 1) the parsing of subsetting was using atoi to convert the parameter to an int, which caused problems for numbers greater that int. Substitute with atof 2) the printing of indices in the subsetting case was not being done. Solution: calculate the element position at the start of the subsetting using the algorythm Given an index I(z,y,x) its position from the beginning of an array of sizes A(size_z, size_y,size_x) is given by Position of I(z,y,x) = index_z * size_y * size_x + index_y * size_x + index_x And pass that position to the function that dumps data, h5tools_dump_simple_data. 3) several index counters were declared as int, use hsize_t instead 4) modified the test generation program so that it includes test cases for subsetting of 1d, 2d, 3d, and 4d arrays and add these tests to the shell script
* [svn-r13063] Cleaned up some memory issues when copying, in preparation for ↵James Laird2006-12-145-27/+15
| | | | | | | | | checking in code to copy shared messages. Should be fewer memory leaks and fewer "uninitialized memory reads." Tested on kagiso, smirom, and Windows.
* [svn-r13062] Albert Cheng2006-12-141-6/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: Test failed when core and multi VFD is used. SOlution: Failure was because the test file was created with the specified VFD access property but later reopened by default access. That won't work for VFDs such as multi that produced files that are incompatible with the default sec2 file driver. Fixed it by using the same VFD access property when it reopens the same test file. However, it still fails for the core VFD which does not create any real file. It is meaningless to try to reopen its file. Fixed it by adding core to the incompatible list of VFDs so that it would skip the test. Split is already coded as incompatible VFD but I don't understand why it is incompatible in this case. Removed it from the incompatible list. Tested Platforms: Copper in which the daily test failed.
* [svn-r13058] Description:Quincey Koziol2006-12-138-89/+74
| | | | | | | | | | | Clean up some shared message operations and other minor tweaks, in the process of trying to solve the messy way that shared object header messages are implemented in general (not James' work - which is fine :-) Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) AIX/32 5.? (copper)
* [svn-r13057] Added a copy_file callback for datatype messages. This sets ↵James Laird2006-12-121-1/+45
| | | | | | | | | their location in the destination file, fixing a bug in the (not yet checked-in) shared message copying changes. Tested on kagiso, smirom, copper, and Windows.
* [svn-r13056] Description:Quincey Koziol2006-12-128-76/+244
| | | | | | | | | | | | | | Add H5SM_type_shared() internal routine to determine if a particular type of header message is sharable in a file. Correct off-by-one error in computing B-tree record size for densely stored attributes' name index. Further progress toward supporting shared attributes in dense storage. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13055] update library and DLL project files on windows.MuQun Yang2006-12-122-0/+120
| | | | All C tests get passed with VS6.0.
* [svn-r13052] Fixed a bug that occured while eliminating "gaps" in object ↵James Laird2006-12-121-0/+7
| | | | | | | | headers when the gap came immediately before a null message. Tested on smirom, kagiso, and copper.
* [svn-r13051] Description:Quincey Koziol2006-12-123-45/+29
| | | | | | | | Minor code neatening, before making snapshot... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13050] Purpose: Code cleanupBinh-Minh Ribler2006-12-121-15/+15
| | | | | | | | | | Description: Fixed several mismatched types causing daily test to fail on tg-login. Platforms tested: Linux 2.6 (kagiso) - just to make sure no ill effects. I cannot login to tg-login3 so am going to watch for it on daily test tonight.
* [svn-r13048] Description:Quincey Koziol2006-12-122-41/+78
| | | | | | | | | | | | Set up tests for next phase of testing dense attribute operations, with shared attributes. Other minor code cleanups... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13047] Description:Quincey Koziol2006-12-128-78/+232
| | | | | | | | | | | | | | Add "attribute exists" internal routine to make verifying that an attribute with the same name doesn't already exist easier. Tweak "trace" script to produce more whitespace in H5TRACE macros, in order to make them easier to read. Minor other whitespace cleanups Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13046] Description:Quincey Koziol2006-12-122-64/+62
| | | | | | | | Minor editing & code cleanups. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13045] Description:Quincey Koziol2006-12-1231-477/+1231
| | | | | | | | | | | | | | Switch from using H5L_index_t/H5L_INDEX_<foo> to H5_index_t/H5_INDEX_<foo> in order to accommodate indices on aspects of attributes as well as links. Add basic support for deleting attributes in dense storage (needs more support/tests for shared attributes in dense storage still). Misc. cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13044] Updated for the new SVN server location.HDF Tester2006-12-111-1/+1
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* [svn-r13042] Pedro Vicente Nunes2006-12-1121-196/+373
| | | | | added a size of array information when printing differences modified print_pos and diff_datum for having one extra argument *dims
* [svn-r13041] Description:Quincey Koziol2006-12-1112-708/+1235
| | | | | | | | | | | Migrate "internalish" attribute operations into new source code file. Add test & basic support for opening attributes in dense storage (shared attributes not tested or supported yet). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13039] Purpose: Add testBinh-Minh Ribler2006-12-111-0/+55
| | | | | | | | | | Description: Added test_string_attr to partially test recent fix of Attribute::read. Platforms tested: AIX 5.1 (copper) Linux 2.6 (kagiso) SunOS 5.8 64-bit (sol)
* [svn-r13038] Purpose: Fixed user reported bugBinh-Minh Ribler2006-12-112-6/+12
| | | | | | | | | | | | | | | Description: In Attribute::read, H5Aread malloc's memory for the read data buffer, so Attribute::read shouldn't allocate the buffer, but needs to deallocate with HDfree. Fixed a typo in H5StrType.cpp, should pass PredType::C_S1 to "copy" instead of H5T_C_S1. Platforms tested: AIX 5.1 (copper) Linux 2.6 (kagiso) SunOS 5.8 64-bit (sol)
* [svn-r13037] Description:Quincey Koziol2006-12-085-120/+209
| | | | | | | Move attribute creation code out of H5Omessage.c and into H5Oattr.c Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r13036] Description:Elena Pourmal2006-12-081-4/+4
| | | | | | | VMS maintenance: brought command file up-to-date. Platforms tested: VMS server at Boeing
* [svn-r13035] Fixed a small problem in Line 782 - buf[6] should be set to 0, too.Raymond Lu2006-12-081-0/+1
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* [svn-r13034] Description:Quincey Koziol2006-12-087-18/+29
| | | | | | | | Take out separate memory type in the file for SOHM objects and create aliases for existing memory types for SOHM use. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r13033] Pedro Vicente Nunes2006-12-072-13/+18
| | | | avoid usage to call exit(1), it makes processes to stop in parallel.
* [svn-r13032] Pedro Vicente Nunes2006-12-072-119/+122
| | | | introduced a new macro PDIFF to calculate differences for unsigned types
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