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* [svn-r21475] Description: fixed C_LOC(X) non-standard argument X for ↵Scot Breitenfeld2011-10-054-62/+62
| | | | | | multi-dimensional arrays detected using xlf compiler. Tested: jam (intel, gnu, pgi) F2003 compilers.
* [svn-r21469] updated with the change of Windows platform switched back to ↵Albert Cheng2011-10-041-0/+4
| | | | | | use SEC2 as the default VFD.
* [svn-r21459] Problem:Albert Cheng2011-10-041-1/+1
| | | | | | | | | | Some machines, like LLNL udawn, a blue-gene machine, requires all executables, be launched by some command like mpirun. Solution: Added $RUNSERIAL to launch the executable. Tested: LLNL uDawn.
* [svn-r21457] Problem:Albert Cheng2011-10-041-0/+10
| | | | | | | | | | | Function TOOLTEST_OUTPUT does not filter the extra system messages sent to stdout or stderr, thus causing output mismatched with expected output. Solution: Added STDOUT_FILTER and STDERR_FILTER to filter them out. Tested: Tested LLNL uDawn (Blue-Gene cluster), for serial mode only.
* [svn-r21443] Snapshot version 1.9 release 93HDF Tester2011-10-0214-30/+30
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* [svn-r21442] Description:Quincey Koziol2011-10-019-16/+795
| | | | | | | | | | | | | | | | | | | | | | Check in "actual I/O mode" feature to trunk. Will merge back to 1.8 branch after it bakes over the weekend. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r21437] Added listing of all cmake options availableAllen Byrne2011-09-301-0/+47
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* [svn-r21436] Issue 7701 - H5LTdtype_to_text had memory corruption while ↵Raymond Lu2011-09-303-171/+391
| | | | | | being querried about the size of the buffer needed. The problem happened when the internal buffer is reallocated, the new address got lost. I revised the code to pass the new address as the return value of functions. I also added two new test cases. Tested on jam, linew, and koala.
* [svn-r21435] Add F2003 IF-ENDIF protection blocks around _F03 file processingAllen Byrne2011-09-302-2/+28
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* [svn-r21434] Description: Removed 12 byte real tests and definition from ↵Scot Breitenfeld2011-09-301-38/+10
| | | | | | fortran types, it was not used in the main fortran src. Tested: jam (gnu, g95, intel)
* [svn-r21425] Add 2003 fortran to settings textAllen Byrne2011-09-271-0/+1
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* [svn-r21422] Add 2003 examples to cmake buildAllen Byrne2011-09-271-1/+39
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* [svn-r21417] Correct indentation in cmake config file.Allen Byrne2011-09-262-1/+12
| | | | Add option for allowing -fPIC.
* [svn-r21415] Snapshot version 1.9 release 92HDF Tester2011-09-2514-30/+30
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* [svn-r21413] Description:Jonathan Kim2011-09-231-2/+8
| | | | | | | | | | Skip parallel diff test "-c non_comparables1.h5 non_comparables2.h5" due to hanging issue occurring on koala (linux64-LE) intermittently. Plan to put back when resolved. The test was related to J7693. Tested: jam (linux32-LE), koala (linux64-LE)
* [svn-r21412] Change windows default driver to SEC2Allen Byrne2011-09-232-4/+2
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* [svn-r21406] Updated Makefile.in after updating from trunk.Scot Breitenfeld2011-09-211-1/+1
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* [svn-r21405] Added dependencies, for HDF5.lo and HDF5mpio.lo, ↵Scot Breitenfeld2011-09-212-7/+7
| | | | | | | | H5_ff_F90/F03.lo and H5_ff.lo to resolve failures when building HDF5.lo and HDF5mpio.lo. Tested: jam (gcc, mpi) using both: make HDF5.lo and make HDF5mpio.lo
* [svn-r21397] Fix mis-spell non_comparables#.h5. It's from previous checkin ↵Jonathan Kim2011-09-161-2/+2
| | | | for HDFFV-7693. (r21396)
* [svn-r21396] Purpose:Jonathan Kim2011-09-1629-40/+313
| | | | | | | | | | | | | | | | | | | | HDFFV-7693 - h5diff produces different behavior between versions: 1.8.3 and 1.8.6 Description: There were two issues on this. One was not displaying all the comparable objects if non-comparable object/attribute exist and compared before comparables ones. This issue occurred after 1.8.4 release. This is the issue from user. The other issue was not displaying all the comparable attributes, if non-comparable object/attribute exist and compared ahead. This issue were exist even before 1.8.4 release. So it's possible some attribute comparison may have not displayed correctly in the past, if non-comparable data were exist in common object. Fixed h5diff to display all the comparable object and attribute regardless of non-comparables. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam, Windows)
* [svn-r21393] Just moved comment to the top of the Tools' list as the new ↵Jonathan Kim2011-09-141-4/+5
| | | | | | entry is suppose to add to the top not the bottom. Relate to fix for HDFFV-5932 - h5repack.
* [svn-r21389] Test case added for HDFFV-5932 - h5repack breaks files with ↵Jonathan Kim2011-09-141-4/+2
| | | | | | | dimension scales. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r21386] Fixed a void pointer (need to cast it to char*) because it ↵Peter Cao2011-09-141-4/+4
| | | | causes problem on Windows.
* [svn-r21382] Update values of references(object and region) of attributes in ↵Peter Cao2011-09-142-160/+324
| | | | h5repack for 1) references, 2) ARRAY of references, 3) VLEN of references, and 4) COMPOUND of references.
* [svn-r21381] Peter Cao2011-09-141-1/+5
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* [svn-r21378] The tools used "%hhd" to print signed char. But VMS doesn't ↵Raymond Lu2011-09-133-3/+19
| | | | | | know it. So I used H5_VMS to have a different way ("%hd") to print it. Tested on jam. Not tested on VMS yet. Simple change.
* [svn-r21374] Snapshot version 1.9 release 91HDF Tester2011-09-1114-30/+30
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* [svn-r21373] Description: Changed the robodoc keywords in the comments Scot Breitenfeld2011-09-109-123/+123
| | | | to the RM documentation's standards.
* [svn-r21366] JIRA HDFFV-2748 replace use of _WIN32 in source. Created new ↵Allen Byrne2011-09-0626-2181/+2190
| | | | | | defines H5_HAVE_WIN32_API and H5_HAVE_VISUAL_STUDIO defines to use. These can be properly set during configurration. Tested: windows and local linux - reviewed internally
* [svn-r21362] Change the integer type for filno in in H5O_info_t derived ↵Scot Breitenfeld2011-09-051-8/+8
| | | | | | | | | | | | | | | | | type to c_long to match the unsigned long, via standard: F2003, Note 15.9 "The C international standard specifies that the representations for nonnegative signed integers ar ethe same as the corresponding values for signed integers. Because Fortran does not provide direct support for unsigned kinds of integers, the ISO_C_BINDING module does not make accessible named constants for their kind type parameter values. Instead, a user can use the signed kinds of integers to interoperate with the unsigned types and all their qualified versions as well...." Tested: (jam, intel)
* [svn-r21360] Snapshot version 1.9 release 90HDF Tester2011-09-0414-30/+30
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* [svn-r21358] Purpose:Jonathan Kim2011-09-0210-35/+728
| | | | | | | | | | | HDFFV-7712 - h5diff: segfault over combinations of complex container types (compound, array, vlen) Description: - Fixed segfault over dataset with container types (array,lven) with multiple nested compound types. (ex: compound->array->compound, compound->vlen->compound) Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r21357] I updated the information about the fixes for Issue 7674 - ↵Raymond Lu2011-09-021-0/+9
| | | | CLANG compiler's complaints.
* [svn-r21354] Issue 7674 - CLANG compiler complained about the line (about 800):Raymond Lu2011-09-011-10/+48
| | | | | | | | | | tempint = (tempint >> packed_data_offset) & packed_data_mask; The right shift may cause undefined behavior if PACKED_DATA_OFFSET is 32-bit or more. For every kind of native integers, I changed the code to make it zero if PACKED_DATA_OFFSET is greater than or equal to the size of integer. Tested on Mac OS Lion with CLANG compiler and jam, koala, and linew.
* [svn-r21353] HDFFV-4018: static function for windows and pthreadsAllen Byrne2011-09-011-0/+6
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* [svn-r21352] Missed stat structure change to use h5_stat_t. Should have been ↵Allen Byrne2011-09-011-1/+1
| | | | part of HDFFV-7687 review and commit. File already used HD prefix on stat function.
* [svn-r21348] Need PATH active by default during install for daily binary ↵Allen Byrne2011-09-011-1/+1
| | | | testing needs
* [svn-r21347] Need PATH active by default during install for daily binary ↵Allen Byrne2011-09-011-2/+2
| | | | testing needs
* [svn-r21342] Issue 7674 - clang compiler with -fcatch-undefined-behavior ↵Raymond Lu2011-08-311-6/+12
| | | | | | | | | -ftrapv discovered several problems in the test suite. One of them is in the INIT_INTEGER macro definition in dt_arith.c. It complained about line 150 where it tried to subtract 1 from the negative minimal value of "int", causing it to overflow (or underflow). So I revised the code to avoid it. Tested on jam, koala, linew, and Mac OS Lion with CLANG compiler.
* [svn-r21340] Add check for target already existsAllen Byrne2011-08-311-4/+4
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* [svn-r21339] Description: Added test for reading and writing vl strings in ↵Scot Breitenfeld2011-08-312-1/+256
| | | | | | | fortran (using F2003), for both 1D and 2D array of vl strings. Tested: jam (pgi, gfortran 4.5, ifort) linew (12.3 beta)
* [svn-r21338] Description: Added a check: if --enable-fortran2003 was ↵Scot Breitenfeld2011-08-312-1/+14
| | | | | | specified and a compiler is not on an approved list of compilers that support f2003, then configure will now return an error and stop. Tested: jam
* [svn-r21334] HDFFV-7687: add HD macro prefrix to functions and use h5_stat_t ↵Allen Byrne2011-08-306-59/+65
| | | | | | where necessary reviewed
* [svn-r21329] Snapshot version 1.9 release 89HDF Tester2011-08-2814-30/+30
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* [svn-r21317] Correct zlib references, zlib svn no longer has src folderAllen Byrne2011-08-262-3/+3
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* [svn-r21316] add testlibinfo to ignore list for memcheckAllen Byrne2011-08-261-0/+1
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* [svn-r21315] Fix for fortran 2003-related bin/reconfigure warnings (with ↵Dana Robinson2011-08-252-10/+7
| | | | proper quoting this time). Tested on jam (w/ gfortran 4.5.3 for fortran 2003), talwit and linew.
* [svn-r21312] Description: fixed un-initialized errors for strings and ↵Scot Breitenfeld2011-08-251-6/+9
| | | | | | changed the INTEGER type getting passed the verify* programs in the test programs. Fixes problems with Sun compilers 12.3 beta with the -m64 flag. Tested: linew( 12.3 beta)
* [svn-r21308] Add NSIS silent install optionAllen Byrne2011-08-251-2/+15
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* [svn-r21306] Description:Scot Breitenfeld2011-08-242-6/+6
| | | | | | | | | | | Changed the minimum required version for the pgi compiler to be 11.7, 11.3 version fails in tH5P_F03.f90 when the option -fast is used (i.e. production mode) f_ptr = C_LOC(rd_c) CALL H5Pget_fill_value_f(dcpl, comp_type_id, f_ptr, error) it returns all zeros, version 11.7 does not have this problem. tested: jam koala (pgi, 11.3 and 11.7)
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