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* [svn-r28802] Description:Quincey Koziol2016-01-051-3/+3
| | | | | | | Correct another H5MM_free => H5MM_xfree Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel
* [svn-r28800] Description:Quincey Koziol2016-01-052-6/+6
| | | | | | | Correct H5MM_free => H5MM_xfree Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel
* [svn-r28798] Description:Quincey Koziol2016-01-053-2/+5
| | | | | | | | Add missing H5MMprivate.h header file Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
* [svn-r28797] Description:Quincey Koziol2016-01-059-64/+54
| | | | | | | | Clean up another round of memory allocation mis-matches. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
* [svn-r28795] Description:Quincey Koziol2016-01-052-3/+8
| | | | | | | | Clean up more memory allocation mis-matches. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
* [svn-r28792] Added cleanup for new test files to tfile.c.Dana Robinson2016-01-041-0/+2
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28790] Description:Quincey Koziol2016-01-041-2/+2
| | | | | | | | Correct non-portable 'SIZE_T_MAX' to 'SIZET_MAX'. Tested on: Linux/32 2.6.x (jam) w/default compilers (h5committest forthcoming)
* [svn-r28788] Added extern C block to H5Epubgen.h (via bin/make_err).Dana Robinson2016-01-041-0/+12
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28777] Description:Quincey Koziol2016-01-0312-48/+397
| | | | | | | | | | Add --enable-memory-alloc-sanity-check option to configure, to track and sanity check memory allocations within the library. This is orthogonal to the --enable-using-memchecker option and can be used with/without it. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28773] Description:Quincey Koziol2016-01-031-1/+13
| | | | | | | | | Clear memory for shared message info when "deferring" and using memory checker, so valgrind doesn't whine. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28769] Description:Quincey Koziol2016-01-033-4/+8
| | | | | | | | More memory cleanups and leak elimination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28765] Description:Quincey Koziol2016-01-021-1/+1
| | | | | | | | | Bump the nunmber of v2 B-tree records for the random 4-level B-tree update test by another 25,000 records. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r28761] Description:Quincey Koziol2016-01-0117-122/+482
| | | | | | | | | | | | Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also make H5Ocopy use a private version of H5Lexists, which doesn't internally throw (and suppress) errors when an object (or the path to it) isn't found in the destination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28759] Description:Quincey Koziol2015-12-311-1/+1
| | | | | | | | Bump number of records for level 4 update test, to cut down on number of random failures. Tested on: None - trivial
* [svn-r28756] Description:Quincey Koziol2015-12-302-21/+29
| | | | | | | | Minor code neatening and cleanups (same as r28755) on revise_chunks branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (Too minor for h5committest)
* [svn-r28748] Description:Quincey Koziol2015-12-301-1/+1
| | | | | | | | | Bump number of records for level 4 B-tree test, so that it's more likely to always get to level 4. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28742] Description:Quincey Koziol2015-12-2912-377/+3089
| | | | | | | | | Add 'update' operation to v2 B-trees, which will insert a new record, or modify an existing one, depending on if the record exists or not. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28730] Snapshot version 1.9 release 233HDF Tester2015-12-286-7/+7
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* [svn-r28723] Description:Quincey Koziol2015-12-226-59/+187
| | | | | | | | | Bring over rest of performance improvements for extending chunked datasets and normalize against revise_chunks branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel) (h5committest forthcoming)
* [svn-r28717] Description:Quincey Koziol2015-12-211-9/+6
| | | | | | | | Minor change to align w/revise_chunks branch Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (too minor for h5committest)
* [svn-r28710] Description:Quincey Koziol2015-12-1912-250/+680
| | | | | | | | | | | | Bring r28708 from revise_chunks branch: Fix earray, farray and btree2 use of incorrect file pointer when two files are opened and used to access the data structure. Misc. minor code cleanups as well. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel h5committest forthcoming
* [svn-r28702] Description:Quincey Koziol2015-12-171-1/+1
| | | | | | | Fix typo in comment. Tested on: (Unneeded)
* [svn-r28696] Minor normalization with revise_chunks.Dana Robinson2015-12-176-110/+106
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28678] Updated the cache_tagging test to correctly output tags inDana Robinson2015-12-161-62/+62
| | | | | | | the debug/verbose function. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28669] Changes to correct errors found with -ansi flag.Larry Knox2015-12-152-5/+3
| | | | | | | | | h5tools_dump.c Removed 3 lines commented out with //. h5_vds-percival-unlim.c Changed C++-style comment to C-style comment. Tested with h5committest.new.
* [svn-r28663] Merge of r28662 from revise_chunks.Dana Robinson2015-12-151-1/+2
| | | | Whitespace only.
* [svn-r28655] Updated MANIFEST :/Dana Robinson2015-12-151-0/+2
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* [svn-r28646] Minor normalization with revise_chunks.Dana Robinson2015-12-1420-57/+11
| | | | | | | | | Also purged obsolete /*ARGSUSED*/ from the library. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28643] Add H5D_t pointer to chunk callback.Dana Robinson2015-12-143-8/+9
| | | | | | | | | Normalization for future single chunk indexing. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28638] HDFFV-9273: cmakehdf5 --script failed in linux platypusAlbert Cheng2015-12-141-266/+0
| | | | | | Solution: remove --script option from cmakehdf5. Tested: platypus
* [svn-r28629] Minor normalization with revise_chunks.Dana Robinson2015-12-143-24/+18
| | | | | | | Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28626] Brought VFD-level file locking code over from revise_chunks.Dana Robinson2015-12-1411-45/+720
| | | | | | | Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28624] Minor normalization of H5FA package with revise_chunks.Dana Robinson2015-12-1410-427/+417
| | | | | | | Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28620] Minor normalization of H5HL package with revise_chunks.Dana Robinson2015-12-142-6/+7
| | | | | | | Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28616] Normalization of H5HL package with revise_chunks.Dana Robinson2015-12-1411-924/+1028
| | | | | | | | | NOTE: Flush dependency code was not moved. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 w/ CMake 3.3.2 serial only (Autotools and CMake since new files were added) (these changes have been in revise_chunks for a long time)
* [svn-r28614] Normalization of H5FS package with revise_chunks.Dana Robinson2015-12-149-477/+395
| | | | | | | | | Mostly minor fixes like warnings, etc. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28612] Normalization of H5G package with revise_chunks.Dana Robinson2015-12-148-23/+25
| | | | | | | | | Mostly minor fixes like warnings, etc. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28606] Description:Quincey Koziol2015-12-1325-273/+270
| | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28599] Normalization of tools with revise_chunks.Dana Robinson2015-12-1116-278/+249
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only, autotools and CMake (3.3.2)
* [svn-r28581] Brought flock changes over from revise_chunks as well as a fewDana Robinson2015-12-116-5/+197
| | | | | | | minor tweaks from H5private.h. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only, autotools and CMake (3.3.2)
* [svn-r28577] Normalize test/th5o.c with revise_chunks.Dana Robinson2015-12-111-0/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28575] Normalize test/file_image.c with revise_chunks.Dana Robinson2015-12-111-29/+68
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28573] Merge of r28109 from revise_chunks. Minor change to test/vds.c.Dana Robinson2015-12-111-3/+3
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28570] Normalization of test/lheap.c with revise_chunks.Dana Robinson2015-12-111-49/+52
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28568] Normalization of test/big.c with revise_chunks.Dana Robinson2015-12-111-8/+8
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28565] Normalization of bin/trace with revise_chunks in preparationDana Robinson2015-12-111-0/+4
| | | | | | | for merge. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) bin/trace run only
* [svn-r28563] HDFFV-9612: added ability to run multiple make commands.Albert Cheng2015-12-101-3/+18
| | | | | | | Added --njobs option to special number of jobs (-j N) to allow multiple commands during build (cmamke) and testing (ctest). Tested: platypus.
* [svn-r28555] Normalization of Fortran directory with revise_chunks (minor).Dana Robinson2015-12-101-0/+8
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial, with and without the direct VFD enabled
* [svn-r28553] Merge of r28436 from revise_chunks. Cleans up warnings exposedDana Robinson2015-12-105-228/+244
| | | | | | | by gcc 5.2 in the flex/bison code. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28538] Merge of r28479 from revise_chunks.Dana Robinson2015-12-081-16/+17
| | | | | | | | Fixes OS X compilation problems and brings some Linux symbols in line with the Autotools when building with CMake. Tested on: 64-bit OS X 10.11.1 El Capitan (Darwin 15.0.0) Xcode 7.1 Apple LLVM 7.0.0 (clang-700.1.76)