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* [svn-r14614] add/remove previous filesPedro Vicente Nunes2008-02-191-33/+63
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* [svn-r14613] 971 (B2) h5import bug on Windows w/binary datasets. CLOSED. ↵Pedro Vicente Nunes2008-02-1939-191/+397
| | | | | | | | | | | | | | | | | | fread in windows needs a binary file to be open with "rb" instead of "r" otherwise it terminates execution if an end of file character is found on the input file. Besides that the binary file generated needs to be open with "wb" , otherwise an end of line character is read twice. DONE NOW for 1.8, already done previously for 1.6 renamed the h5import test files to have the extensions text input files = .txt binary input files = .bin configuration files = .conf hdf5 files = .h5 besides that in very test the files have the same name except extension. For example TOOLTEST txtin16.txt -c $srcdir/testfiles/txtin16.conf -o txtin16.h5 The convention for the test name is for example, for "txtin16" "txt" for text then "in16" means integer 16 size Tested: linux, solaris
* [svn-r14609] Purpose: Update Windows documentation for last checkinScott Wegner2008-02-191-14/+8
| | | | | Description: List the new HL C examples that were added in the last checkin. Rather than listing each one individually, we give a brief summary, and instructions for how to test them.
* [svn-r14608] Purpose: Add missing Windows HL C examplesScott Wegner2008-02-1975-94/+15836
| | | | | | | | | Description: The Windows suite of examples for HL C was a very small subset of the examples that exist for other platforms. Now we have all of the HL C examples-- integrated into the VS projects files, and batch test scripts. Tested: VS2005 on WinXP VNET on WinXP
* [svn-r14607] Purpose: Apply Cygwin patch to trunkScott Wegner2008-02-193-52/+44
| | | | | | | | Description: This is the same patch that Mike McGreevy helped me with on the 1.8 branch. The latest cygwin DLL has trouble with the global timezone variable. Now in configure, we target CYGWIN with a case statement, and avoid the problem. Tested: Cygwin on WinXP
* [svn-r14605] Purpose: Rename Windows HL Example projects to match other ↵Scott Wegner2008-02-1826-541/+555
| | | | | | | | | | | | | platforms Description: The collection of HL C examples that we distribute for Windows is incomplete. I wasn't aware of it until Pedro pointed it out, because we use different (although similar) names for the generated files. This checkin changes the naming to follow Linux, in preparation to add the rest of the HL examples to Windows. Note: I believe I've updated the MANIFEST accordingly, but I may have missed something-- I'll check on Linux shortly after this commit. Tested: VS2005 on WinXP VS.NET on WinXP
* [svn-r14603] Purpose: Add hdf5 library as a dependency to hdf5_hl library in ↵Scott Wegner2008-02-183-664/+671
| | | | | | | | | | | | | Windows project files Description: For some reason, the hdf5_hl library didn't have hdf5 listed as a dependency. This isn't normally a problem, because building "all" will build hdf5 library. However, when a user tries to build only hdf5_hl, hdf5 library wouldn't be built. Although not technically required for compiling the library code, the hdf5 library is needed for linking any applications, so it's a natural dependency. Tested: VS2005 on WinXP VNET on WinXP
* [svn-r14599] Purpose: Fix very minor typo in Windows h5import test scriptScott Wegner2008-02-181-1/+1
| | | | | | | | Description: Single-letter typo in the Windows test script was causing us to return the wrong error code in some cases. Tested: VS2005 on WinXP
* [svn-r14598] 1050 (B2) make H5TBdelete_record call H5Dset_extent and ↵Pedro Vicente Nunes2008-02-181-4/+0
| | | | | | | | | parameter checking. Removed #ifdefs regarding possible un-commenting of H5Dset_extent call in H5TBdelete_record. DONE NOW for 1.8, done already FOR 1.6 the H5Dset_extent function was done in 2002 but was at a time (2003-2006) previewed not to be used it is now being used again tested: windows, linux, solaris (in progress :-) )
* [svn-r14596] Purpose: Allow for better logging in Windows commandline build ↵Scott Wegner2008-02-181-3/+44
| | | | | | | | | | script Description: Previously, all of our build output would simply go to stdout/stderr for command-line builds. We can pipe this into a log file as a whole, but the complete logfile becomes very large very quickly. Instead, we give the user an option to place build results and test results into separate logs (or even the same). This will help keeping track of results in our automated testing. Tested: VS2005 on WinXP
* [svn-r14593] Purpose: Removing warningsBinh-Minh Ribler2008-02-182-6/+0
| | | | | | | | Description: Removed several warnings of unused terms. Platforms tested: Linux 2.6 (smirom) - very minor
* [svn-r14582] Purpose:Albert Cheng2008-02-141-628/+687
| | | | | | | | | | | | | | | | | | | | | | | | | | Fold all the updates made for v1.8.0 release to the main trunk. Versions are from r14548 to r14556. Changes are, Updated section 4 for v1.8 release. (May still check the v1.6 INSTALL to see if something can be adopted from there. But this is good for v1.8 release.) Moved the section 2. "Warnings about compilers" to Appendix A; renumbered section 3-7 to section 2-6 and fixed all section references. Updated Website names from ncsa.uiuc.edu to hdfgroup.org or hdfgroup.uiuc.edu. Updated section 1-3 and some of section 4. Quick editorial review. Convert tabs to spaces for consistent display and printing. Verify and fix links and references. Moved the following three paragraphs to the Appendix part since they have old information that are not relevant most recent machines or compilers. "Large (>2GB) versus small (<2GB) file capability", "Building and testing with Intel compilers" "Building and testing with PGI compilers"
* [svn-r14569] aligned textPedro Vicente Nunes2008-02-131-2/+2
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* [svn-r14564] Maintenance: Added new history files according to the proposed ↵Elena Pourmal2008-02-135-4/+13
| | | | | | and agreed policy see http://www.hdfgroup.uiuc.edu/RFC/HDF5/QA/RFC-HIS-REL-1.8_Feb6.pdf
* [svn-r14553] Purpose: Minor cleanup of Windows installation scriptsScott Wegner2008-02-122-184/+334
| | | | | | | | Description: Make the Windows copy_hdf.bat a little cleaner/safer, and produce useful output in installhdf5lib.bat Tested: VS2005 on WinXP
* [svn-r14551] Revise Supported Configuration Features Summary tables.Larry Knox2008-02-121-80/+72
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* [svn-r14549] Added more tests. Test both H5Sselect_elements and ↵Raymond Lu2008-02-111-41/+249
| | | | | | | | H5Sselect_hyperslab, for both chunked and contiguous datasets. Tested on smirom, kagiso, and linew.
* [svn-r14547] Maintenance: Changed version number to 1.9.0 as we agreed on ↵Elena Pourmal2008-02-115-41/+26
| | | | | | the HDF5 developers meeting on February 8, 2008; modified docs files to point to the documentation snapshots.
* [svn-r14541] Purpose: updateAlbert Cheng2008-02-091-11/+24
| | | | | | | Updated the parallel test suite section with more parallel tests description to prepare for v1.8.0 release. Test: eyeballed.
* [svn-r14526] Maintenance: Changed version number in the trunk to be 1.9.0-snap0hdf5-1_9-startElena Pourmal2008-02-077-19/+19
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* [svn-r14524] Maintenance before creating new 1.8.0 branch: Added RELEASE.txt ↵Elena Pourmal2008-02-072-951/+2559
| | | | | | to the HISTORY file and cleaned up the RELEASE.txt file
* [svn-r14490] Purpose: Add workaround for latest Cygwin DLLScott Wegner2008-02-041-15/+40
| | | | | | | Description: We've run into a bug that was introduced in the latest version of Cygwin, that breaks C99 code using the 'timezone' global variable. As a workaround, we use the -ansi flag, which makes everything compile/link/test correctly Tested: Cygwin on WinXP
* [svn-r14489] Maintenance: I am reverting Pedro's change since we have 1.8 ↵Elena Pourmal2008-02-041-0/+4
| | | | | | branch code freeze. No changes are allowed until official announcement.
* [svn-r14488] uncomment a call to H5Dset_extent in the delete records functionPedro Vicente Nunes2008-02-041-4/+0
| | | | | | | this function was done in 2002 but was at a time (2003-2006) previewed not to be used it is now being used again tested: windows, linux
* [svn-r14486] Purpose: Update Windows documentation on 1.6 API compatibilityScott Wegner2008-02-041-23/+40
| | | | | | | Description: Wrote documentation on how to use the 1.6 API for a user application-- this replaces the outdated documentation we previously had. Tested: VS2005 with HDFEOS5
* [svn-r14485] Update Platforms Tested and Supported Configuration Features ↵Larry Knox2008-02-021-64/+64
| | | | sections.
* [svn-r14484] Maintenance: Changed version number to 1.8.0 in preparation for ↵Elena Pourmal2008-02-015-15/+15
| | | | | | the release.
* [svn-r14470] Purpose: Fixing configure problem on IRIX64.Mike McGreevy2008-01-304-8/+8
| | | | | | | | | | | | | | | Description: IRIX64 failed to build tools/h5import, as well as c++/test with szip. This is because IRIX is very picky when it comes to linking libraries, and must be done in specific order. (other UNIXes are not as such, and thus the problem wasn't present). Solution: Rearrange the order in which the libraries are linked on the compiler line by sorting the line that assigns libraries into the LDADD variable in the Makefile.am's of the two respective directories. Tested: IRIX64, kagiso, smirom
* [svn-r14468] Update windows support information. MuQun Yang2008-01-291-12/+12
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* [svn-r14467] update release.txt fileMuQun Yang2008-01-291-2/+2
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* [svn-r14466] Update installation file on windowsMuQun Yang2008-01-291-11/+39
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* [svn-r14463] Purpose: Updating shared library version number for 1.8.0 release.Mike McGreevy2008-01-283-7/+7
| | | | | | | | | | | Description: config/lt_vers.am was updated as follows due to changes in API since last version update: LT_VERS_INTERFACE = 5 LT_VERS_REVISION = 0 LT_VERS_AGE = 0 Tested: kagiso
* [svn-r14460] Maintenance: Created rc2 tar ball and released to the ftp server;Elena Pourmal2008-01-275-16/+16
| | | | Changed version number to hdf501.8.0-rc3 using bin/h5vers script
* [svn-r14459] Purpose: Small patch to Windows install scriptScott Wegner2008-01-251-2/+2
| | | | | Description: A user pointed out that one of our Fortran dependencies wasn't getting installed correctly due to a wrong path in our install file. After reviewing, I've applied the patch that he's proposed.
* [svn-r14458] Fixed coredump under production 64-bit solaris.John Mainzer2008-01-251-13/+30
| | | | | | | | | | | | | | | | As best I can tell, H5C_make_space_in_cache() was accessing memory that had been deallocated -- however the bug was easy to mask, and jumped around even in different runs of the same executable. While I was never able to generate a definitive test case that exposed exactly where the core dump occured, I was able to generate print statement traces which made it clear that I was accessing freed memory. In any case, reworking the code to avoid the reference to freed cache entries seems to have fixed the problem. Tested serial production on Phoenix, and commit tested. Also, partial tests Linew.
* [svn-r14456] aligned textPedro Vicente Nunes2008-01-241-9/+9
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* [svn-r14454] Description:Quincey Koziol2008-01-241-0/+7
| | | | | Update the release notes with comment about addressing the "AURA format corruption" bug.
* [svn-r14450] Fixed metadata cache performance bug introduced while adding ↵John Mainzer2008-01-231-11/+12
| | | | | | | | | | | code to detect and handle the case in which the skip list or LRU is modified out from under a scan of same by the flush callback of the entry under consideration. Test serial debug, serial production, and parallel debug on phoenix, and commit tested.
* [svn-r14448] Maintenance: Released version hdf5-1.8.0-rc1 to the public fTP ↵Elena Pourmal2008-01-217-18/+18
| | | | | | | | server and changed the version to hdf5-1.8.0-rc2 using bin/h5vers script. Platforms tested: ran test for hdf5-1.8.0-rc1 source on kagiso after craeting public tar ball.
* [svn-r14447] Purpose: Fix output directory for h5reparttst projectScott Wegner2008-01-211-2/+2
| | | | | | | | Description: For some reason, the h5reparttst output folder wasn't set correcty for 64-bit Windows. This may have gotten accidentally changed with other intermediate project file changes. Tested: VS2005 on WinXP x64
* [svn-r14445] Added code to detect the situation in which a metadata cache ↵John Mainzer2008-01-203-48/+548
| | | | | | | | | | | | | | entry flush callback functions modifies the skip list or LRU out from under a partial or complete flush of the cache. This is a test for a situation that should not occur, but we test anyway. Also added code to skip longer tests in cache_api in express tests. Tested serial and parallel on phoenix (debian --x86-32), and commit test. Elena commit tested as well, and ran a manual test under MacOS X.
* [svn-r14443] Purpose: Update Windows h5dump test scriptPurpose: Update ↵Scott Wegner2008-01-181-5/+7
| | | | | | | | | | Windows h5dump test script Description: There was another update to the main h5dump test script. This checkin brings those edits to the Windows script as well. Tested: VS2005 w/ WinXP
* [svn-r14442] Modified metadata cache to adapt more quickly to the insertion of aJohn Mainzer2008-01-1814-78/+3071
| | | | | | | | | | | | | | | | | large entry, or to a large increases in the size of an existing entry. This required some additions to the cache configuration structure, and thus will require changes in the metadata cache documentation. The basic idea is to monitor the size of entries as they are loaded, inserted, or increased in size. If the size of the entry (or increase) exceeds some user selected fraction of the size of the cache, increase the size of the cache. Note that this fix was designed quickly -- while it deals with the use case that exposed the problem, we may have to revisit the issue later. Tested serial and parallel on Phoenix, and h5committest.
* [svn-r14439] more features and bugsPedro Vicente Nunes2008-01-161-0/+8
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* [svn-r14438] add mention to bugs fixedPedro Vicente Nunes2008-01-161-6/+10
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* [svn-r14437] bug fix for h5dump subsetting (deal with blocks)and new test runsPedro Vicente Nunes2008-01-167-79/+166
| | | | | | | | | | | | | | | | | | | | | | | | | add a check for block overlap after the command line parsing * Algorithm * * In a inner loop, the parameters from SSET are translated into temporary * variables so that 1 row is printed at a time (getting the coordinate indices * at each row). * We define the stride, count and block to be 1 in the row dimension to achieve * this and advance until all points are printed. * An outer loop for cases where dimensionality is greater than 2D is made. * In each iteration, the 2D block is displayed in the inner loop. The remaining * slower dimensions above the first 2 are incremented one at a time in the outer loop * * The element position is obtained from the matrix according to: * Given an index I(z,y,x) its position from the beginning of an array * of sizes A(size_z, size_y,size_x) is given by * Position of I(z,y,x) = index_z * size_y * size_x * + index_y * size_x * + index_x * tested: windows, linux
* [svn-r14436] Purpose: Fix minor bug in VS.NET project fileScott Wegner2008-01-161-1/+1
| | | | | | | | Description: It seems that during the conversion, one project (h52gifdll) began using the wrong Runtime-library settings. This was causing Link errors for only the Release DLL build. This has been fixed now. Tested: VS.NET on WinXP
* [svn-r14435] Purpose: Update RELEASE.txt for WindowsScott Wegner2008-01-161-19/+16
| | | | | Description: Updated level of support for MinGW, Windows XP x64 and Windows Vista. Also noted that VS6 is no longer supported.
* [svn-r14434] Purpose: Minor updates to compiler-specific Windows documentationScott Wegner2008-01-162-26/+6
| | | | | Description: After doing a quick review of the documentation, I found a few points that had been overlooked before.
* [svn-r14433] Purpose: Fix reference in the Windows batch-build scriptScott Wegner2008-01-161-24/+1
| | | | | Description: In the Windows command line build script, there was a reference to the "typegen" project, which generates h5detect before HDF5 is built. Now, we integrate h5detect into the overall build process, and typegen has been removed. This checkin removes the reference in the batch script. This fixes bugzilla bug 1021.
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