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| | | * [svn-r27957] Description:Quincey Koziol2015-10-051-23/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Minor whitespace cleanups. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| | | * [svn-r27956] Description:Quincey Koziol2015-10-052-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Minor code cleanups, preparing to merge to trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| | | * [svn-r27946] Brought VDS branch in sync with trunk (up to r27945).Dana Robinson2015-10-0436-574/+2080
| | | |\ | | | |/ | | |/| | | | | | | | | | | | | | | | | | | | | Tested on Ubuntu 15.04 (Linux 3.19 x86_64), gcc 4.9.2, MPICH 3.1.4 and CMake 3.3.2. - Autotools serial w/ Fortran, C++ - Autotools parallel w/ Fortran - CMake serial w/ Fortran, C++
| | * | [svn-r27945] Purpose: Fix HDFFV-9529Binh-Minh Ribler2015-10-0422-430/+1896
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Merged from hdf5_CppAPI_Constants r27942: ------ Description: - Added H5dont_atexit() to getPredType and all the getConstant's to prevent the C library from terminating before the C++ library cleanup. - More cleanup and added more comments r27923: ------ - Updated more comments and moved some things around for consistency - Removed check for "new" failure, exceptions would be thrown r27922: ------ Description: Added function headers and more comments for clarity. r27917: ------ Description: The C++ library has several types of global constants from different classes, such as PropList, PredType, DataSpace, etc... Previously, these global constants were declared statically and the C++ library used a constant, called PredType::AtExit, to detect when all the global contants are destroyed then close the C library (H5close). This method relied on the order of the constants being created and destroyed and that PredType constants be the last to be destroyed. In September 2015, it was recognized that the order in which the global constants were created and destroyed was actually undefined, thus can be different between different compilers. This resulted in failure when compilers destroy PredType constants before others because when PredType::AtExit was destroyed, the C library was closed, so when the constants of other classes such as PropList or DataSpace were being deleted, the C library would not be available. Solution: The static approach is changed to dynamic. In order to avoid an impact on existing applications, the static global constants are changed to constant references to the dynamically allocated objects. A detailed explanation of the new method and a description of the changes are in a Design Notes at the end of the file H5PredType.cpp. New functions added to support the new methods are listed below. class H5Library: // Returns a singleton H5Library to initialize the global // constants, invoked in IdComponent default constructor static H5Library* getInstance(); // public // Registers cleanup and terminating functions with atexit(), // called in IdComponent default constructor static void initH5cpp(void); // public // Calls H5close to terminate the library, registered with // atexit(), as the last thing to be done. static void termH5cpp(void); // public class PredType: // Creates the constants static void makePredTypes(); // private // Calls makePredTypes to create the constants and returns // the dummy constant PREDTYPE_CONST; static PredType* getPredTypes(); // private class DataSpace: // Creates the constant static DataSpace* getConstant(); // private class PropList: // Creates the constant static PropList* getConstant(); // private class DSetCreatPropList: // Creates the constant static DSetCreatPropList* getConstant(); // private class DSetMemXferPropList: // Creates the constant static DSetMemXferPropList* getConstant(); // private class FileCreatPropList: // Creates the constant static FileCreatPropList* getConstant(); // private class FileAccPropList: // Creates the constant static FileAccPropList* getConstant(); // private This function is added to PredType, DataSpace, PropList, and the four subclasses of PropList: // Deletes the constant static void deleteConstants(); // public Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| | * | [svn-r27943] Purpose: Fix HDFFV-7947 (cont.)Binh-Minh Ribler2015-10-032-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: In the friend functions that setId, changed the direct assignment of id to using p_setId() so that the previous id can be closed first to avoid memory leaks. This change was tested and confirmed by user Jorj on Forum when his application stopped running out of memory. Currently, the C++ library doesn't have a way to test this. A function such as H5Inmembers for library ids would be helpful. Platforms tested: Linux/32 2.6 (jam) SunOS 5.11 (emu) Darwin (osx1010test)
| | * | [svn-r27939] Remove H5D__iterate and use H5S_select_iterate directlyJerome Soumagne2015-10-026-69/+97
| | | | | | | | | | | | | | | | | | | | Add internal library callback to H5S_select_iterate to avoid having to pass hid_t objects internally
| | * | [svn-r27938] Fix private/public H5A_get_type and H5A_get_spaceJerome Soumagne2015-10-024-38/+49
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| | * | [svn-r27937] fix caseAllen Byrne2015-10-021-25/+25
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| | * | [svn-r27933] Cmake 3.3 allowed execute_process to merge output and error ↵Allen Byrne2015-10-025-42/+42
| | | | | | | | | | | | | | | | | | | | | | | | files if the filename or the variable were the same. Changed instances to make the outpu_variable different.
| | * | [svn-r27932] Increase timeout for istore test when running under vfd.Allen Byrne2015-10-021-0/+2
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| | | * [svn-r27944] Description:Quincey Koziol2015-10-041-6/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Avoid duplicating source FAPL & DAPL if they are already available. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| | | * [svn-r27935] Cmake 3.3 allowed execute_process to merge output and error ↵Allen Byrne2015-10-025-42/+42
| | | | | | | | | | | | | | | | | | | | | | | | files if the filename or the variable were the same. Changed instances to make the outpu_variable different.
| | | * [svn-r27918] Brought in sync with the trunk:Dana Robinson2015-09-3013-240/+355
| | | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | r27860-27883 r27892-27916 Tested on: - h5committest - jam (parallel) fails with an existing, unrelated MPI config error - platypus fails with due to an existing, unrelated cmakehdf5 error where it does not recognize --enable-fortran2003.
| | | * \ [svn-r27916] Re-merge of r27884-27891 from the trunk + bugfix for a fewDana Robinson2015-09-305-90/+130
| | | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | H5S recursive functions where an aliased pointer was incorrectly set too early. Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) w/ gcc 4.9.2 serial and parallel (w/ MPICH 3.1.4)
| | | * | | [svn-r27912] Revert of r27887, which caused failures in the vds test. TheseDana Robinson2015-09-2911-277/+176
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | changes will be merged more carefully so we can more easily identify any errors that arise. Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) w/ gcc 4.9.2 serial and parallel (w/ MPICH 3.1.4)
| | | * | | [svn-r27887] Description:Quincey Koziol2015-09-2711-176/+277
| | | |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge changes from trunk to the branch. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| | | * | | | [svn-r27885] Description:Quincey Koziol2015-09-271-4/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Check if the layout has been retrieved before setting it again. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| | | * | | | [svn-r27879] Move property list shutdown earlier in H5_term_library, since ↵Neil Fortner2015-09-251-4/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | with VDS layout it needs to call into the H5D package. Tested: ummon
| | | * | | | [svn-r27876] Description:Quincey Koziol2015-09-251-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Make virtual layout return to the property list occur in all cases, even on failure. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not needed on this branch)
| | | * | | | [svn-r27860] Description:Quincey Koziol2015-09-233-1/+11
| | | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Sync w/changes on trunk Tested on: Not necessary, text only...
| | | * \ \ \ \ [svn-r27852] Description:Quincey Koziol2015-09-220-0/+0
| | | |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Sync w/trunk (which was already from the VDS branch) Tested on: MacOSX/64 10.10.5 (amazon) w/serial (h5committest not required)
| | | * \ \ \ \ \ [svn-r27850] Description:Quincey Koziol2015-09-2210-82/+142
| | | |\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Sync w/trunk Tested on: MacOSX/64 10.10.5 (amazon) w/serial (h5committest not required on this branch)
| | | * | | | | | | [svn-r27848] Description:Quincey Koziol2015-09-229-94/+89
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings and some normalization against trunk. Tested: McaOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| | | * | | | | | | [svn-r27842] Description:Quincey Koziol2015-09-211-2/+20
| | | |\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (although not CMake) (h5committest not required on this branch)
| | | * | | | | | | | [svn-r27839] Removed generated autotools stragglers missed in trunk sync.Dana Robinson2015-09-219-46672/+0
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| | | * | | | | | | | [svn-r27835] Description:Quincey Koziol2015-09-21608-101535/+13302
| | | |\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| | | * | | | | | | | | [svn-r27769] Maintenance: Fixed example that failed daily tests.Elena Pourmal2015-09-141-6/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested on Mac Air, jam and ostrich.
| | | * | | | | | | | | [svn-r27760] Brought r27631-27755 over from the trunk.Dana Robinson2015-09-1153-2431/+3280
| | | |\ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | tested on: jam
| | | * | | | | | | | | | [svn-r27701] RM offset initialization that is no longer necessary with the ↵Neil Fortner2015-09-082-8/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | recent fix to H5Screate(). Tested: ummon
| | | * | | | | | | | | | [svn-r27673] rm unnecessary/unreachable code from H5S_get_select_hyper_nblocksNeil Fortner2015-09-031-7/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested: ummon
| | | * | | | | | | | | | [svn-r27646] Add version number to VDS global heap object encoding.Neil Fortner2015-09-0127-17/+34
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix handling of layout version number. Other minor fixes/cleanup. NOTE: This commit changes the file format for VDS, all files must be re-generated. Tested: ummon
| | | * | | | | | | | | | [svn-r27632] Description:Quincey Koziol2015-08-3114-247/+87
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revert changes to pass file pointer to selection serialize/deserialize routines. Also patch back in some changes that were merged out in the previous merge w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial (h5committest not required on this branch)
| | | * | | | | | | | | | [svn-r27630] Description:Quincey Koziol2015-08-31146-1014/+1443
| | | |\ \ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring in changes from the trunk, through r27628. Tested on: MacOSX/64 10.10.5 (amazon) w/serial (h5committest not required on this branch)
| | | * \ \ \ \ \ \ \ \ \ \ [svn-r27606] Merge revisions 27593 through 27605 from trunk to vds branch.Neil Fortner2015-08-287-1441/+406
| | | |\ \ \ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested: ummon
| | | * | | | | | | | | | | | [svn-r27599] Ran bin/reconfigureDana Robinson2015-08-276-829/+847
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | tested on: jam
| | | * | | | | | | | | | | | [svn-r27598] Description:Quincey Koziol2015-08-275-39/+23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Check in misc. minor code cleanups, found during code review
| | | * | | | | | | | | | | | [svn-r27593] Merge revisions 27453 through 27592 from trunk to vds branch.Neil Fortner2015-08-27398-71248/+34254
| | | |\ \ \ \ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27547] Fill in public function descriptions from RM entries.Neil Fortner2015-08-212-15/+94
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27546] Add tests for H5O__dset_bh_info (H5Oget_info) and unlimited ↵Neil Fortner2015-08-214-13/+73
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | selections in a region reference. Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27543] Add tests to cover remaining code coverage assertions in ↵Neil Fortner2015-08-203-29/+702
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | H5Shyper.c. Add more tests for unlimited selections. Fix bug related to empty unlimited source dataset. Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27538] Add tests to cover remaining code coverage assertions in src ↵Neil Fortner2015-08-206-33/+418
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | directory except for those in H5Doh.c and H5Shyper.c. Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27528] Modify printf implementation to not open source datasets that ↵Neil Fortner2015-08-192-4/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | were previously opened when calculating the VDS extent, instead assuming they still exist. Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27527] Add tests to hit code coverage assertions in H5Olayout.c.Neil Fortner2015-08-193-13/+54
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix issue in VDS delete routine. Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27520] Add new test for all 3 selection types in the same VDS.Neil Fortner2015-08-182-42/+1097
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Minor cleanup in the tests. Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27506] H5Dset_extent no longer holds all printf source datasets open.Neil Fortner2015-08-148-908/+925
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Other items identified during reviews. Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27505] Add support for H5Dset_extent for VDS.Neil Fortner2015-08-144-61/+420
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add tests for this. Other bug fixes/cleanup Tested: Kubuntu 64 (home computer)
| | | * | | | | | | | | | | | | [svn-r27504] Change comments/code around to reflect decision to have virtual ↵Neil Fortner2015-08-134-8/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | datasets always return TRUE when their is_alloc function is called. Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27501] Add mapping validity checking to VDS open.Neil Fortner2015-08-124-78/+157
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Other minor fixes/cleanup. Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27498] Add support for I/O after reopening a VDS with unlimited and/or ↵Neil Fortner2015-08-122-73/+449
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | printf mappings without calling H5Dget_space first. Add tests for this. Other minor fixes/cleanup. Tested: ummon
| | | * | | | | | | | | | | | | [svn-r27481] Add support for offset selections passed to H5Pset_virtual.Neil Fortner2015-08-072-6/+207
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add test for this. Tested: ummon
generated by cgit v0.12 at 2024-07-07 23:03:39 (GMT)