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Added H5OcreatProp.h and H5OcreatProp.cpp.
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Added c++/src/H5OcreatProp.[h/cpp]
Checked with bin/chkmanifest
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Description:
Added wrappers for H5P[s/g]et_attr_phase_change and H5P[s/g]et_attr_creation_order
// Sets attribute storage phase change thresholds.
void setAttrPhaseChange(unsigned max_compact = 8, unsigned min_dense = 6)
// Gets attribute storage phase change thresholds.
void getAttrPhaseChange(unsigned& max_compact, unsigned& min_dense)
// Sets tracking and indexing of attribute creation order.
void setAttrCrtOrder(unsigned crt_order_flags)
// Gets tracking and indexing settings for attribute creation order.
unsigned getAttrCrtOrder()
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Reintegration merge of the VDS branch.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(daily tested for h5committest)
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Minor whitespace cleanups.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Minor code cleanups, preparing to merge to trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Tested on Ubuntu 15.04 (Linux 3.19 x86_64), gcc 4.9.2, MPICH 3.1.4
and CMake 3.3.2.
- Autotools serial w/ Fortran, C++
- Autotools parallel w/ Fortran
- CMake serial w/ Fortran, C++
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Description:
Merged from hdf5_CppAPI_Constants
r27942:
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Description:
- Added H5dont_atexit() to getPredType and all the getConstant's to prevent
the C library from terminating before the C++ library cleanup.
- More cleanup and added more comments
r27923:
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- Updated more comments and moved some things around for consistency
- Removed check for "new" failure, exceptions would be thrown
r27922:
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Description:
Added function headers and more comments for clarity.
r27917:
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Description:
The C++ library has several types of global constants from different
classes, such as PropList, PredType, DataSpace, etc... Previously,
these global constants were declared statically and the C++ library used
a constant, called PredType::AtExit, to detect when all the global
contants are destroyed then close the C library (H5close). This method
relied on the order of the constants being created and destroyed and
that PredType constants be the last to be destroyed. In September 2015,
it was recognized that the order in which the global constants were
created and destroyed was actually undefined, thus can be different
between different compilers. This resulted in failure when compilers
destroy PredType constants before others because when PredType::AtExit
was destroyed, the C library was closed, so when the constants of other
classes such as PropList or DataSpace were being deleted, the C library
would not be available.
Solution:
The static approach is changed to dynamic. In order to avoid an impact
on existing applications, the static global constants are changed to
constant references to the dynamically allocated objects.
A detailed explanation of the new method and a description of the
changes are in a Design Notes at the end of the file H5PredType.cpp.
New functions added to support the new methods are listed below.
class H5Library:
// Returns a singleton H5Library to initialize the global
// constants, invoked in IdComponent default constructor
static H5Library* getInstance(); // public
// Registers cleanup and terminating functions with atexit(),
// called in IdComponent default constructor
static void initH5cpp(void); // public
// Calls H5close to terminate the library, registered with
// atexit(), as the last thing to be done.
static void termH5cpp(void); // public
class PredType:
// Creates the constants
static void makePredTypes(); // private
// Calls makePredTypes to create the constants and returns
// the dummy constant PREDTYPE_CONST;
static PredType* getPredTypes(); // private
class DataSpace:
// Creates the constant
static DataSpace* getConstant(); // private
class PropList:
// Creates the constant
static PropList* getConstant(); // private
class DSetCreatPropList:
// Creates the constant
static DSetCreatPropList* getConstant(); // private
class DSetMemXferPropList:
// Creates the constant
static DSetMemXferPropList* getConstant(); // private
class FileCreatPropList:
// Creates the constant
static FileCreatPropList* getConstant(); // private
class FileAccPropList:
// Creates the constant
static FileAccPropList* getConstant(); // private
This function is added to PredType, DataSpace, PropList, and the four
subclasses of PropList:
// Deletes the constant
static void deleteConstants(); // public
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
In the friend functions that setId, changed the direct assignment of
id to using p_setId() so that the previous id can be closed first to
avoid memory leaks.
This change was tested and confirmed by user Jorj on Forum when his
application stopped running out of memory. Currently, the C++ library
doesn't have a way to test this. A function such as H5Inmembers for
library ids would be helpful.
Platforms tested:
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
Darwin (osx1010test)
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Add internal library callback to H5S_select_iterate to avoid having
to pass hid_t objects internally
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files if the filename or the variable were the same.
Changed instances to make the outpu_variable different.
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Avoid duplicating source FAPL & DAPL if they are already available.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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files if the filename or the variable were the same.
Changed instances to make the outpu_variable different.
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r27860-27883
r27892-27916
Tested on: - h5committest
- jam (parallel) fails with an existing, unrelated MPI config error
- platypus fails with due to an existing, unrelated cmakehdf5 error
where it does not recognize --enable-fortran2003.
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H5S recursive functions where an aliased pointer was
incorrectly set too early.
Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) w/ gcc 4.9.2
serial and parallel (w/ MPICH 3.1.4)
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changes will be merged more carefully so we can more easily
identify any errors that arise.
Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) w/ gcc 4.9.2
serial and parallel (w/ MPICH 3.1.4)
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Merge changes from trunk to the branch.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Check if the layout has been retrieved before setting it again.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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with VDS layout it
needs to call into the H5D package.
Tested: ummon
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Make virtual layout return to the property list occur in all cases, even
on failure.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not needed on this branch)
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Sync w/changes on trunk
Tested on:
Not necessary, text only...
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Sync w/trunk (which was already from the VDS branch)
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(h5committest not required)
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Sync w/trunk
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(h5committest not required on this branch)
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Clean up warnings and some normalization against trunk.
Tested:
McaOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Sync w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel (although not CMake)
(h5committest not required on this branch)
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Sync w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Tested on Mac Air, jam and ostrich.
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tested on: jam
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recent fix to
H5Screate().
Tested: ummon
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Tested: ummon
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Fix handling of layout version number.
Other minor fixes/cleanup.
NOTE: This commit changes the file format for VDS, all files must be
re-generated.
Tested: ummon
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Revert changes to pass file pointer to selection serialize/deserialize
routines. Also patch back in some changes that were merged out in the
previous merge w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(h5committest not required on this branch)
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Bring in changes from the trunk, through r27628.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(h5committest not required on this branch)
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Tested: ummon
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tested on: jam
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Check in misc. minor code cleanups, found during code review
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Tested: ummon
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Tested: ummon
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selections in a
region reference.
Tested: ummon
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H5Shyper.c.
Add more tests for unlimited selections.
Fix bug related to empty unlimited source dataset.
Tested: ummon
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directory except
for those in H5Doh.c and H5Shyper.c.
Tested: ummon
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were previously
opened when calculating the VDS extent, instead assuming they still exist.
Tested: ummon
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Fix issue in VDS delete routine.
Tested: ummon
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Minor cleanup in the tests.
Tested: ummon
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Other items identified during reviews.
Tested: ummon
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