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| | * | | | | | | | | | HDFFV-10625 -- Implemented a process-0 read and then broadcast for ↵Quincey Koziol2019-01-0714-124/+869
| |/ / / / / / / / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | collective read of full (HS_ALL), contiguous, atomic datasets by all the processes in the file communicator.
| * | | | | | | | | | Merge pull request #1444 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-071-37/+37
| |\ \ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '591205127a167b914ef5557f30aa58b2dff96a85': HDFFV-10674 handle time as natural number
| | * | | | | | | | | | HDFFV-10674 handle time as natural numberAllen Byrne2019-01-071-37/+37
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| | | | | | | * | | | Remove H5O_BOGUS_INVALID_ID from H5O_msg_class_g initialization, sinceNeil Fortner2019-01-081-6/+1
| | | | |_|_|/ / / / | | | |/| | | | | | | | | | | | | | | | | | | | | | | | | | space for it was removed.
| | | * | | | | | | Delay checking if decoded message's "shareable" flag is appropriate forNeil Fortner2019-01-078-19/+52
| | |/ / / / / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | the message type until we've verified we understand the message type. Reduce size of H5O_msg_class_g to *not* include space for H5O_BOGUS_INVALID. Make bogus messages shareable. Add new bogus message test with shareable messages to cover the formerly problematic code. Re-run gen_bogus.c to add this test case and also to fix the bogus_invalid messages that were no longer H5O_BOGUS_INVLAID due to a new message class being added in a previous commit. Added comment to remind developers to run gen_bogus.c when adding a new message class.
| * | | | | | | | Merge pull request #1445 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2019-01-071-1/+1
| |\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '982852c603c03a06ca24f219127f49616c7d42cb': Fix for daily test failure: too many arguments to function 'H5Gopen1'
| | * | | | | | | | Fix for daily test failure: too many arguments to function 'H5Gopen1'Vailin Choi2019-01-071-1/+1
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| * | | | | | | | Merge pull request #1434 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2019-01-071-1/+1
| |\ \ \ \ \ \ \ \ | | |/ / / / / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | * commit 'fe6bed2ad722578d0b701e29d22f591923d2fe9f': Fix TESTING_2 macro to align output with TESTING macro
| | * | | | | | | Fix TESTING_2 macro to align output with TESTING macroJordan Henderson2019-01-071-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add more indentation to TESTING_2 macro
| * | | | | | | | Merge pull request #1440 in HDFFV/hdf5 from stackable_vol_fix_14 to developQuincey Koziol2019-01-0626-315/+711
| |\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f0656a57dc3baf02709e1ad5e496cf63cf820877': Remove incorrect comment. Updated error stacks for h5dump testing. Corrected comment in src/H5VLint.c, fixed pass-through info size in src/H5VLpassthru.c, switched to stashing VOL connector ID & info in API context (in src/H5CX.c, src/H5CXprivate.h, src/H5F.c, src/H5Fint.c, and src/H5Fefc.c), patched up all sorts of issues in the tests, to make them work with 'check-vfd' (and 'check-vol' again).
| | * | | | | | | | Remove incorrect comment.Quincey Koziol2019-01-061-1/+0
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| | * | | | | | | | Updated error stacks for h5dump testing.Quincey Koziol2019-01-067-24/+0
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| | * | | | | | | | Corrected comment in src/H5VLint.c, fixed pass-through info size inQuincey Koziol2019-01-0619-291/+712
| | | |_|_|/ / / / | | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | src/H5VLpassthru.c, switched to stashing VOL connector ID & info in API context (in src/H5CX.c, src/H5CXprivate.h, src/H5F.c, src/H5Fint.c, and src/H5Fefc.c), patched up all sorts of issues in the tests, to make them work with 'check-vfd' (and 'check-vol' again).
* | | | | | | | | Added some initial group construction code.Dana Robinson2019-01-061-5/+34
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* | | | | | | | | Added libuuid for generating UUIDs.Dana Robinson2019-01-062-0/+9
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* | | | | | | | | Updated the notes in BRANCH.md.Dana Robinson2019-01-061-5/+9
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* | | | | | | | | Added initial JSON string handling to the connector.Dana Robinson2019-01-061-1/+18
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* | | | | | | | | Added file create/open/close callbacks. These just perform theDana Robinson2019-01-062-5/+153
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | file operations right now and don't deal with JSON streams.
* | | | | | | | | * Checked in a correction to Makefile.amDana Robinson2019-01-065-1/+115
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Added a BRANCH.md file * Added Jansson configuration support
* | | | | | | | | Added the JSON VOL connector plugin framework and a test toDana Robinson2019-01-067-3/+520
|/ / / / / / / / | | | | | | | | | | | | | | | | | | | | | | | | ensure that the plugin can be loaded.
* | | | | | | | Merge pull request #1438 in HDFFV/hdf5 from mpio_vfd_neaten to developQuincey Koziol2019-01-061-475/+319
|\ \ \ \ \ \ \ \ | |/ / / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | * commit '8a5d2c130a93a665933cda8db8554d006b7ca093': Clean up style issues, make function callbacks static, correct debug statements, etc. No functionality changes at all.
| * | | | | | | Clean up style issues, make function callbacks static, correct debug statements,Quincey Koziol2019-01-051-475/+319
|/ / / / / / / | | | | | | | | | | | | | | | | | | | | | etc. No functionality changes at all.
* | | | | | | Merge pull request #1433 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2019-01-047-28/+90
|\ \ \ \ \ \ \ | |/ / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '564565b15ed38d78cb7b29b8c9d9b322d224ab42': HDFFV-10664 update reference file HDFFV-10664 update reference files HDFFV-10664 add missing function and check for restriction
| * | | | | | HDFFV-10664 update reference fileAllen Byrne2019-01-041-3/+1
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| * | | | | | HDFFV-10664 update reference filesAllen Byrne2019-01-043-23/+6
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| * | | | | | HDFFV-10664 add missing function and check for restrictionAllen Byrne2019-01-044-4/+85
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* | | | | | | Merge pull request #1425 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2019-01-042-0/+8
|\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '659dd9bccf69f32bfdd01dc49410116ec5c1b0bb': Align H5Lcreate_ud behavior with documentation for NULL udata pointer
| * | | | | | | Align H5Lcreate_ud behavior with documentation for NULL udata pointerJordan Henderson2019-01-032-0/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add test for H5Lcreate_ud fix
* | | | | | | | Merge pull request #1429 in HDFFV/hdf5 from ↵Larry Knox2019-01-042-0/+23
|\ \ \ \ \ \ \ \ | |_|/ / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-10596-fortran-library-names-differ to develop * commit 'f4c9ec5d41aa53829617274d3286f1e9a45ae57e': Add RELEASE.txt entry for HDFFV-10596. Uninstall should remove the libhdf5_hl_fortran links. Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in Makefile.am to match cmake install and the name pattern for other hl lib files.
| * | | | | | | Merge remote-tracking branch 'origin/develop' into ↵Larry Knox2019-01-044-269/+290
| |\ \ \ \ \ \ \ | |/ / / / / / / |/| | | | | | | | | | | | | | | HDFFV-10596-fortran-library-names-differ
* | | | | | | | Merge pull request #1430 in HDFFV/hdf5 from ↵jake.smith2019-01-041-24/+17
|\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop * commit 'f7115c31363e80e850c0a228e63a5a035c48b74a': Remove "bad" statements at end of TEST_ERROR. Formerly arguments to FAIL_PUTS_ERROR Add semicolon at end of TEST_ERROR() invocation for consistency.
| * | | | | | | | Remove "bad" statements at end of TEST_ERROR.Jacob Smith2019-01-041-24/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Formerly arguments to FAIL_PUTS_ERROR
| * | | | | | | | Add semicolon at end of TEST_ERROR() invocation for consistency.Jacob Smith2019-01-041-1/+1
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* | | | | | | | | Merge pull request #1428 in HDFFV/hdf5 from ↵Dana Robinson2019-01-043-245/+273
|\ \ \ \ \ \ \ \ \ | |/ / / / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:openmpi_tweaks to develop * commit 'd59aa1d75cb6d0ae4f5964d017e275aa53394eb6': Cleaned up the parallel flush test and set t_pflush1 to always fail. Also set CMake to handle this.
| * | | | | | | | Cleaned up the parallel flush test and set t_pflush1 to always fail.Dana Robinson2019-01-043-245/+273
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Also set CMake to handle this.
| | * | | | | | | Add RELEASE.txt entry for HDFFV-10596.Larry Knox2019-01-041-0/+9
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| | * | | | | | | Uninstall should remove the libhdf5_hl_fortran links.Larry Knox2019-01-041-0/+1
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| | * | | | | | | Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran inLarry Knox2019-01-042-1/+14
| |/ / / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Makefile.am to match cmake install and the name pattern for other hl lib files. Add missing ';' to test/dsets.c line 13075.
* | | | | | | | Merge pull request #1427 in HDFFV/hdf5 from ↵jake.smith2019-01-042-37/+37
|\ \ \ \ \ \ \ \ | |/ / / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop * commit '763db8178e673fdcae4a370fe2e6d345f905d5f1': Change FAIL_PUTS_ERROR to TEST_ERROR. Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2.
| * | | | | | | Change FAIL_PUTS_ERROR to TEST_ERROR.Jacob Smith2019-01-041-17/+17
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| * | | | | | | Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2.Jacob Smith2019-01-031-20/+20
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* | | | | | | | Merge pull request #1426 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-036-5/+20
|\ \ \ \ \ \ \ \ | |/ / / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f4516d40feb7ea696e228253bc64a94f55296cbb': Fix comment Update toolchain comment Use c99 standard cmake variable Add PGI toolchain
| * | | | | | | Fix commentAllen Byrne2019-01-031-1/+2
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| * | | | | | | Update toolchain commentAllen Byrne2019-01-033-1/+4
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| * | | | | | | Use c99 standard cmake variableAllen Byrne2019-01-021-3/+3
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| * | | | | | | Add PGI toolchainAllen Byrne2019-01-022-0/+11
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* | | | | | | Merge pull request #1408 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-032-5/+26
|\ \ \ \ \ \ \ | |/ / / / / / |/| | | | | / | | |_|_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop Merged to catch daily test. * commit '40c55f24ecbdd322fba527d768689fbdbd268374': Removed a comment. Fixed documentation - typo only Fixed CVE division-by-zero issues Description: Fixed HDFFV-10577 and similar issues found in H5Dchunk.c. All the occurrences are in: H5D__create_chunk_map_single H5D__create_chunk_file_map_hyper H5D__chunk_allocate H5D__chunk_update_old_edge_chunks H5D__chunk_prune_by_extent H5D__chunk_copy_cb H5D__chunk_collective_fill Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * | | | | Removed a comment.Binh-Minh Ribler2019-01-031-1/+0
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| * | | | | Fixed documentation - typo onlyBinh-Minh Ribler2018-12-231-2/+1
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| * | | | | Merge branch 'develop' of ↵Binh-Minh Ribler2018-12-23319-12035/+21245
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
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