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* [svn-r24779] Description:inactive/merge_metadata_journalingQuincey Koziol2014-03-102-5/+6
| | | | Minor formatting tweaks
* [svn-r22481] Description:Quincey Koziol2012-06-209-1426/+923
| | | | | | | | Bring changes from trunk to this "merging" branch, to make further merging of metadata journaling changes easier. Tested on: N/A - this branch is not compilable currently.
* [svn-r21262] Description:Quincey Koziol2011-08-1830-8911/+8874
| | | | | | | | | Bring changes for "journaling" cache into "merging" branch, for further merging into the trunk. Tested on: Mac OS X/32 10.6.8 (amazon) (h5committest not required on this branch)
* [svn-r20134] Description:Quincey Koziol2011-02-214-12/+72
| | | | | | | | Bring changes from metadata journaling branch to "merging" branch. Tested on: Mac OS X/32 10.6.6 (amazon) w/ debug, production & parallel (h5committest not necessary on this branch)
* [svn-r19123] Description:Quincey Koziol2010-07-229-120/+552
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Converge code on "metadata journaling merge" branch to be closer to code on current trunk: - Updates to internal error reporting macros - Updated routines to operation on superblock extension - Object header query operations Misc. minor updates to caching code. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19113] Description:Quincey Koziol2010-07-2022-130/+36
| | | | | | | | Rename H5AC_set() to H5AC_insert_entry() Get rid of H5C_set_skip_flags() & related flags Tested on: Eyeballed only, very simple...
* [svn-r18911] Description:Quincey Koziol2010-05-2729-1408/+1138
| | | | | | | | | More general changes to align trunk with eventual changes from metadata journaling branch. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, production & parallel (h5committest not required on this branch)
* [svn-r18863] Description:Quincey Koziol2010-05-2025-1300/+287
| | | | | | | | | | | | | General cleanups to align metadata journaling branch and trunk Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18861] Description:Quincey Koziol2010-05-2058-33042/+13077
| | | | | | | | | | | Upgrade autoconf framework and run bin/reconfigure, to align better with metadata journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode
* [svn-r18822] Description:Quincey Koziol2010-05-1516-1756/+1186
| | | | | | | | | | Remove the size parameter from H5[A]C_unprotect() and the H5[A]C__SIZE_CHANGED_FLAG, switching all clients & tests over to using H5[A]C_resize_entry appropriately. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug & prod (h5committest not required on this branch)
* [svn-r18789] Description:Quincey Koziol2010-05-131-4/+3
| | | | | | | | | Correct error in H5C_resize_entry() where protected entry sizes were not updated if the entry being resized was both pinned and protected. Tested on: Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode (h5committest not required on this branch)
* [svn-r18738] Description:Quincey Koziol2010-05-0713-181/+107
| | | | | | | | | | | Switch H5AC_resize_pinned_entry() to work on protected entries as well, and rename to H5AC_resize_entry() Tested on: Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode (h5committest not required on this branch)
* [svn-r18724] Description:Quincey Koziol2010-05-0620-587/+534
| | | | | | | | Rename H5[A]C_rename to H5[A]C_move_entry. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug & production (h5committest not required on this branch)
* [svn-r18720] Description:Quincey Koziol2010-05-0617-506/+91
| | | | | | | | | | | | | | | | | | | Bring changes from metadata journaling branch to 'merging' branch: Rename H5[A]C_mark_pinned_or_protected_entry_dirty() to H5[A]C_mark_entry_dirty() and get rid of H5[A]C_mark_pinned_entry_dirty(). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18715] Description:Quincey Koziol2010-05-0522-98/+146
| | | | | | | | Changes to further align trunk with state of metadata journaling branch. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug & production (h5committest not required on this branch)
* [svn-r18672] Description:Quincey Koziol2010-04-2953-800/+1085
| | | | | | | | | | | | | | | | | | Mostly changes to move to only using one 'user data' parameter for calls to H5AC_protect(), along with some minor reformatting code cleanups. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18570] Description:Quincey Koziol2010-04-156-4/+9
| | | | | | | | | Fix a memory leak, a problem in the metadata accumulator and clean up a few compiler warnings. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, prod & parallel (h5committest not required on this branch)
* [svn-r18542] Description:Quincey Koziol2010-04-1027-870/+2386
| | | | | | | | | | | | | | | | | | | | | Bring new object header pin/unpin & protect/unprotect routines and split-out object header chunk proxy changes from metadata_journaling branch to "merging" branch, along with some other minor tweaks to clean up compiler warnings, etc. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18523] Description:Quincey Koziol2010-04-064-37/+59
| | | | | | | | | | Bring metadata journaling branch into closer correspondence with trunk: extract data structure freeing routines from metadata cache client 'destroy' callbacks. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (h5committest not required on this branch)
* [svn-r18519] Description:Quincey Koziol2010-04-065-16/+83
| | | | | | | | | | Bring metadata journaling branch into closer correspondence with trunk: extract data structure freeing routines from metadata cache client 'destroy' callbacks. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, production & parallel (h5committest not required on this branch)
* [svn-r18501] Description:Quincey Koziol2010-04-025-60/+96
| | | | | | | | | Extract data structure 'destroy' routines from metadata cache client 'destroy' callbacks. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (h5committest not required on this branch)
* [svn-r18497] Description:Quincey Koziol2010-04-026-70/+219
| | | | | | | | | Extract data structure 'destroy' routines from metadata cache client 'destroy' callbacks. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (h5committest not required on this branch)
* [svn-r18491] Description:Quincey Koziol2010-04-0110-223/+440
| | | | | | | | | Extract data structure 'destroy' routines from metadata cache client 'destroy' callbacks. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, production & parallel (h5committest not required on this branch)
* [svn-r18483] Description:Quincey Koziol2010-04-013-23/+1
| | | | | | | | Remove unused symbol table entry dirty flag. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, production & parallel (h5committest not required on this branch)
* [svn-r18481] Description:Quincey Koziol2010-04-012-60/+21
| | | | | | | | | A couple of tweaks to bring the "merging" branch into better sync with the metadata journaling branch. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, production & parallel (h5committest not required on this branch)
* [svn-r18459] Description:Quincey Koziol2010-03-2524-768/+696
| | | | | | | | | | | | | | | | | | | | Further convergence of the metadata journaling changes toward the trunk. Lots of little things in the cache code, remove the H5F_t * from the H5G_entry_t struct. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18356] Description:Quincey Koziol2010-03-0225-169/+126
| | | | | | | | | | | | Converge metadata journaling branch with trunk with a bunch of v1 B-tre changes: - Remove H5ACprivate.h header from H5Bprivate.h header - Revise v1 B-tree client callbacks - Get rid of H5B_serialize() by bringing it into H5B_flush() Tested on: Mac OS X/32 10.6.2 (amazon) w/debug, prod & parallel (h5committest not required on this branch)
* [svn-r18229] Description:Quincey Koziol2010-02-113-2445/+2451
| | | | | | | | | | | Bring r18227 from metadata_journaling branch to the merging branch: Small cleanups and move v1 cache maintenance macros into package header file, to better align with changes to v2 cache. Tested on: FreeBSD 6.3/32 (duty) w/debug (h5committest not required on this branch)
* [svn-r18196] Description:Quincey Koziol2010-01-30307-14247/+14247
| | | | | | | | | Trim trailing whitespace from source files, with the following command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - just eyeballed
* [svn-r18169] Description:Quincey Koziol2010-01-2630-2141/+2217
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Converge changes on metadata_journaling branch and trunk: - Remove H5F_t* parameter from H5HL_unprotect() - Remove H5F_t* parameter from H5HL_dirty() - Remove H5F_t* parameter from H5O_unprotect() - Bring changes to metadata caching routines back: - H5AC_pin_protected_entry() - H5AC_resize_pinned_entry() - H5AC_unpin_entry() - H5AC_mark_pinned_entry_dirty() - H5AC_mark_pinned_or_protected_entry_dirty() - Revise internal H5C routines to drop H5F_t* and/or H5C_t* as parameter where possible - Revise tests to follow internal routine changes Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18104] Description:Quincey Koziol2010-01-122-12/+12
| | | | | | | | | Minor brush-clearing changes to converge metadata_journaling branch and trunk. Tested on: Mac OS X/32 10.6.2 (amazon) debug & prod (h5committest not required on this branch)
* [svn-r18071] Description:Quincey Koziol2010-01-0723-558/+1685
| | | | | | | | | | Refactor local heap routines with changes from metadata journaling branch, along with other misc. changes as the changes on the metadata journaling branch are being converged with the current state of the trunk. Tested on: Mac OS X/32 10.6.2 (amazon) debug & prod (h5committest not required on this branch)
* [svn-r18044] Description:Quincey Koziol2009-12-205-50/+36
| | | | | | | | | | Slush changes back & forth between trunk, the merging branch and the metadata journaling branch to level them out to a reasonably common set of code to work from for the next set of more significant changes. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug (h5committest not required on this branch)
* [svn-r18041] Description:Quincey Koziol2009-12-1911-971/+1168
| | | | | | | | | | | Move local & global heap metadata cache callback routines to their own source module, as they are in later revisions of the trunk and on the metadata journaling branch, in order to make the convergence of the trunk and the metadata journaling branch easier. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug (h5committest not required on this branch)
* [svn-r18035] Description:Quincey Koziol2009-12-1929-760/+476
| | | | | | | | | More "brush clearing" convergence between metadata_journaling branch and the trunk. Tested on: Mac OS X/32 10.6.2 (amazon) debug & prod (h5committest not required on this branch)
* [svn-r18030] Description:Quincey Koziol2009-12-1770-2086/+956
| | | | | | | | | | | | | | | | | | | | | | | Bring "brush clearing" changes (whitespace & style issues, mostly) from metadata_journaling branch to the "merging" branch, to converge the trunk and the metadata_journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r15457] Description:Binh-Minh Ribler2008-08-111-1/+29
| | | | | | | Added notes about: - bugzilla 1068: revising class hierarchy to move Attribute out. - replacing IdComponent::dereference with new H5Object member functions and constructors in various other classes.
* [svn-r15455] Snapshot version 1.9 release 13HDF Tester2008-08-108-21/+21
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* [svn-r15451] Purpose: Fix various problems that were occurring when using ↵Neil Fortner2008-08-079-138/+426
| | | | | | | | | | | | | | | | mounted files. Description: Moved mount table from top file structure to shared file structure. Moved parent out of mount table and back into top file structure. Mounted files can now be accessed from any handle of the parent file. Changes to how files are closed. Stricter cycle checking on mounted files. Removed unused function H5F_has_mount(). Tested: committest in 1.8 branch. Committing now due to the urgency of the fix. No changes here are specific to the trunk, but I will keep an eye on the daily tests.
* [svn-r15446] bug fixPedro Vicente Nunes2008-08-072-4/+16
| | | | | | | http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=788 don't print array indices for regions tested: windows, linux
* [svn-r15445] added some commentsPedro Vicente Nunes2008-08-072-1/+15
| | | | tested: windows, linux
* [svn-r15440] Purpose: Correct a few typos from my previous editScott Wegner2008-08-061-9/+10
| | | | | | | | | | Description: -- Remove a couple lines of debugging output -- Make sure H5_PACKAGE_NAME outputs 'HDF5' rather than 'hdf5' -- Take into account version strings with a postfix. This isn't currently used in HDF5 1.9 branch, but is in HDF5 1.8. Tested: kagiso
* [svn-r15439] Add the following patch Peter Cao2008-08-061-1/+1
| | | | | | | | | | | | | | | | === The following patch to h5copy.c on or near line 173 makes the tool substantially more useful... *flag = (*flag) | fla; Because the command-line option parsing permits multiple '-f' arguments, this will have the effect of or'ing the flags together so one can do someting like.... ~/tmp/hdf5-1.8.1/tools/h5copy/h5copy -i multi_ucd3d.h5 -s block5 -o gorfo -d foo -f shallow -f soft Mark C. Miller, Lawrence Livermore National Laboratory email: mailto:miller86@llnl.gov ===
* [svn-r15438] Purpose: Bring the Windows H5pubconf.h up-to-dateScott Wegner2008-08-063-155/+665
| | | | | | | | | | | | | | Description: This commit is a major update to the Windows-maintained H5pubconf.h file. This file is statically-distributed because Windows cannot generate it dynamically as other platforms do. Previously, our Windows version contained a minimal subset of the macro definitions required. To update, I've gone through each macro (based on kagiso's output), and tested for the correct value on Windows. This allows us to better target code based on feature flags. It should also be easier to update in the future as changes are made to the configure script. This commit also contains one small bug fix in h5ls.c. Some Windows-specific code was missing a local variable definition. The bug went unnoticed because Windows didn't define the feature flag correctly. I've also made changes to the h5vers script. Whenever the version string is incremented (automatically by h5test after a snapshot), the strings in H5pubconf.h will also be updated. Tested: VS2005 on WinXP (32- and 64-bit) VS.NET on WinXP 32-bit h5vers tested under Cygwin
* [svn-r15432] bug fixPedro Vicente Nunes2008-08-051-6/+8
| | | | | | the compression ratio was being printed for cases where a layout was requested and not a filter tested: windows, linux
* [svn-r15431] added the h5diff "contents" mode to the h5diff calls in the ↵Pedro Vicente Nunes2008-08-051-0/+3
| | | | | | h5repack test tested: windows, linux
* [svn-r15430] Purpose: Update Windows test script for new h5diff option: -cScott Wegner2008-08-042-1/+7
| | | | | | | | Description: A new parameter was added to h5diff recently. We add a new test to the h5diff script, and change the syntax in which h5diff is called from the h5repack test script Tested: VS2005 on WinXP
* [svn-r15429] new test for h5diffPedro Vicente Nunes2008-08-041-0/+1
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* [svn-r15428] http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1170Pedro Vicente Nunes2008-08-0421-116/+361
| | | | | | | | | | Summary: when using h5diff to compare the results of h5repack (or other tools that copy one HDF5 file to another), a new option is needed to allow h5diff to make an "absolute" comparison of the 2 files. This is the "contents" mode explained in the usage below. If this mode is present, objects in both files must match (must be exactly the same). If this does not happen, the tool returns an error code of 1 (instead of the success code of 0) Changes to the h5repack test script: the call to h5diff was changed to include -c (maintaining the previous -q). tested: windows, linux, solaris
* [svn-r15425] Snapshot version 1.9 release 12HDF Tester2008-08-037-18/+18
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