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* [svn-r27199] Description:Quincey Koziol2015-06-138-2157/+1201
| | | | | | | | | Large code cleanups and optimizations, in preparation for the upcoming v3 metadata cache merge. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27198] Set "entire_chunk" to false in H5D__chunk_write() for point ↵Vailin Choi2015-06-122-4/+5
| | | | | | selection as duplicate points are not checked to determine that it is really an "entire chunk". The bug appears from running the mdset.c test. This is a short-term fix for the problem.
* [svn-r27196] Move pbbits file to subfolderAllen Byrne2015-06-1255-137/+137
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* [svn-r27185] fix more instances where both mpi is_initialized and ↵Mohamad Chaarawi2015-06-103-88/+96
| | | | | | is_finalized need to be checked before making any MPI calls. tested with h5committest.
* [svn-r27172] Change disable to skip big test on cygwinAllen Byrne2015-06-092-8/+10
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* [svn-r27171] Disable big test on cygwinAllen Byrne2015-06-092-24/+29
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* [svn-r27163] update manifest for newly added file.Mohamad Chaarawi2015-06-081-0/+1
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* [svn-r27162] fix for HDFFV-9412:Mohamad Chaarawi2015-06-085-20/+112
| | | | | | | - Check for mpi is_initialized and is_finalized before making MPI calls in init/terminate of HDF5. - Add a test to make sure we can make serial HDF5 calls from rank 0 after MPI_Finalize is called. tested with h5committest
* [svn-r27159] Snapshot version 1.9 release 221HDF Tester2015-06-0813-24/+24
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* [svn-r27158] missed rename if UNUSED to H5_ATTR_UNUSED in trace script.Mohamad Chaarawi2015-06-071-1/+1
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* [svn-r27144] Description:Quincey Koziol2015-06-0337-501/+635
| | | | | | | | | | Normalize trunk against the metadata_cache_merge branch, in preparation for merging the branch into the trunk. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/64 2.6.x (koala) w/serial Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27142] Add optional variable for version extensionAllen Byrne2015-06-031-23/+24
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* [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-01172-1266/+1279
| | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* [svn-r27130] Fix warnings in H5TconvJerome Soumagne2015-06-011-91/+132
| | | | | | Remove H5T_INIT_INTERFACE from H5Tconv Add macro in H5Tconv to check overflow when using H5T_CONV_uS
* [svn-r27129] Fix warnings in H5TbitJerome Soumagne2015-06-011-5/+7
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* [svn-r27128] Fix warnings in H5TdbgJerome Soumagne2015-06-011-2/+44
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* [svn-r27127] Snapshot version 1.9 release 220HDF Tester2015-06-0113-24/+24
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* [svn-r27114] Fixed spelling and which file is created with the program.Scot Breitenfeld2015-05-271-1/+1
| | | | Tested: none -- comments only.
* [svn-r27111] move undef of __attribute__ back to private and remove its ↵Mohamad Chaarawi2015-05-264-11/+6
| | | | usage from public routines.
* [svn-r27110] Snapshot version 1.9 release 219HDF Tester2015-05-2413-24/+24
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* [svn-r27097] Fixed a typo in test/th5o.c that caused the wrong property listDana Robinson2015-05-181-2/+2
| | | | | | ID to be checked. Tested on: h5committest
* [svn-r27092] Snapshot version 1.9 release 218HDF Tester2015-05-1713-24/+24
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* [svn-r27089] move private functions from H5A.c to H5Aint.cMohamad Chaarawi2015-05-153-266/+266
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* [svn-r27087] Add changes for debug flagsAllen Byrne2015-05-151-2/+8
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* [svn-r27084] Description:Quincey Koziol2015-05-157-1441/+549
| | | | | | | | Clean up cache tests, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27083] Description:Quincey Koziol2015-05-151-13/+22
| | | | | | | | Clean up H5SM interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27082] Description:Quincey Koziol2015-05-152-69/+61
| | | | | | | | Clean up H5O interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27081] Description:Quincey Koziol2015-05-152-24/+25
| | | | | | | | Clean up H5HL interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27080] Description:Quincey Koziol2015-05-151-595/+355
| | | | | | | | Clean up H5HF interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27079] Description:Quincey Koziol2015-05-151-8/+8
| | | | | | | | Clean up H5G interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27078] Description:Quincey Koziol2015-05-153-22/+20
| | | | | | | | Clean up H5FS interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27077] Description:Quincey Koziol2015-05-154-46/+67
| | | | | | | | Clean up H5FD interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27076] Description:Quincey Koziol2015-05-156-48/+107
| | | | | | | | Clean up H5FA interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27075] Description:Quincey Koziol2015-05-156-35/+46
| | | | | | | | Clean up H5F interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27074] Description:Quincey Koziol2015-05-156-57/+101
| | | | | | | | Clean up H5EA interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27073] Description:Quincey Koziol2015-05-152-4/+4
| | | | | | | | Clean up H5D interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27072] Description:Quincey Koziol2015-05-154-318/+203
| | | | | | | | Clean up H5B interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27071] Description:Quincey Koziol2015-05-159-482/+485
| | | | | | | | Clean up H5B2 interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux 2.6.* (jam) w/serial & parallel
* [svn-r27070] Description:Quincey Koziol2015-05-154-64/+65
| | | | | | | | | Clean up the H5B interface code, to better align with v3 metadata cache changes. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27068] Description:Quincey Koziol2015-05-155-370/+370
| | | | | | | | | Clean up the H5A interface code, to better align with v3 metadata cache changes. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27066] Description:Quincey Koziol2015-05-151-1/+8
| | | | | | | Protect gcc 5 debugging options Tested on: MacOSX/64 10.10.3 (amazon) w/gcc 5.1
* [svn-r27064] HDFFV-9327: Refactor compiler flags to config file.Allen Byrne2015-05-143-250/+294
| | | | Tested: local linux
* [svn-r27060] Description:Quincey Koziol2015-05-141-161/+90
| | | | | | | | | Clean up obsolete and unsupported versions of GCC, and update for GCC 5.1 release. Tested on: Mac OSX/64 10.10.3 (amazon) w/C++, FORTRAN, serial, production & parallel (gcc 5.1 not available on other systems)
* [svn-r27058] Description:Quincey Koziol2015-05-1312-288/+528
| | | | | | | | | | Convert internal chunk structures to use 'scaled' coordinates instead of absolute coordinates. Tested on: Mac OSX/64 10.10.3 (amazon) w/parallel & serial Linux 2.6.x/32 (jam) w/parallel & serial Linux 2.6.x/64 (koala) w/serial
* [svn-r27045] Renamed H5_ASSIGN_OVERFLOW() to H5_CHECKED_ASSIGN() and re-orderedDana Robinson2015-05-1051-150/+171
| | | | | | the arguments to be in a more logical order. Tested on: h5committest
* [svn-r27040] Moved '*' in H5PLget_loading_state() so that bin/trace would ↵Dana Robinson2015-05-082-2/+3
| | | | | | | | correctly process it and ran bin/trace. Tested on: h5committest
* [svn-r27037] Added other platforms comment to cmd line and quoted use of ↵Allen Byrne2015-05-071-7/+10
| | | | directory in option.
* [svn-r27035] Do not pass warnings options to non-gnu compilers when ↵Jerome Soumagne2015-05-071-4/+8
| | | | compiling with CMake
* [svn-r27031] Fix warnings in H5detect and clean up code, use unsigned variablesJerome Soumagne2015-05-061-149/+152
| | | | | | | | | | | | | | | | | | | | | | Use H5_GCC_DIAG_ON/OFF to suppress larger-than and float-equal warnings Variables used with sigsetjmp/siglongjmp must be declared as volatile Remove unnecessary use of volatile after r24171 fix and fix prototypes Tested in release mode on: - jam (CentOS 5.11 i386 GCC 4.1.2) - ostrich (RHEL 6.6 ppc64 GCC 4.4.7) - local linux (OpenSuSE 13.2 x86_64 GCC 4.8.3) - local linux (Fedora 21 x86_64 GCC 4.9.2) - local linux (Fedora 21 x86_64 ICC 15.0.2) - local windows (Windows 8.1 x86_64 MSVC 2013 update 4) - lemur (MacOSX 10.10.3 x86_64 clang-602.0.49 Xcode 6.3.1) - ibm p95a07 (Ubuntu 14.10 ppc64le GCC 4.9.1) - ibm p95a07 (Ubuntu 14.10 ppc64le IBM XL C V13.1.1) - bluewaters (Cray PE 2.2.1 x86_64 GCC 4.8.2) - bluewaters (Cray PE 2.2.1 x86_64 Cray C 8.3.3) - bluewaters (Cray PE 2.2.1 x86_64 PGCC 14.2)
* [svn-r27029] Fix bad comment in H5detect, this was preventing PGCC from ↵Jerome Soumagne2015-05-061-1/+1
| | | | | | compiling correctly. Tested on: bluewaters
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