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New feature
Description:
Check in initial "fractal heap" code, for supporting the group redesign.
Also, remove some remnants of the segmented heap/block tracker/B+tree code
which I didn't find during the last pass.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Mac OSX (amazon)
Linux 2.4
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Code cleanup
Description:
Style fixes for consistency & other minor cleanups
Platforms tested:
FreeBSD 4.11 (sleipnir)
Mac OSX (amazon)
Linux 2.4
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Maintenance
Description:
Remove half-built (half-baked? :-) implementation of B+tree, block tracker
and segmented heaps. (In preparation for starting the new heap coding)
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4 (heping)
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bug fix
Description:
ret_value is not set to SUCCEED in H5D_mpio_select_write
That causes the 64-bit intel compiler unhappy.
It will give a non-zero number and cause the testing fake failure.
Another one is picked up by cmpi again. For one optimization case,
another variable is not initialized properly and compiler set an unhappy number,
cause the test failed.
Solution:
Properly initialize those variables.
Platforms tested:
teragrid:parallel
mir:parallel
heping: parallel and sequential
tungsten:parallel
Misc. update:
h5committest doesn't finish due to no space left on device.
parallel tests still failed at tungsten with cmpi. It looks like it was a bug from cmpi.
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bug fix for daily test
Description:
if (fm->select_chunk) is not NULL at sequential mode and not set by the library, it shouldn't be free.
Otherwise, it will cause failures in the daily test.
Solution:
Explicitly set (fm->select_chunk) to NULL for non-parallel case.
Platforms tested:
copper with parallel
heping with both sequential and parallel
shanti with sequential
Misc. update:
Hopefully only mir failed at daily test.
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The previous check-in seems fixing the non-selection failure at heping.
Description:
release the special_collective_io_works macro at this platform.
Solution:
Platforms tested:
heping mpich 1.2.6
Misc. update:
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Bug fix in collective IO code
Description:
When select none occurs in one process, fm->select_chunk hasn't been allocated the memory(not allocated until create_file_hyper); however, this needs to be checked; it was caught with cmpi at NCSA linux cluster.
Solution:
Relocate the place to allocate the memory space for fm->select_chunk.
Platforms tested:
cmpi at tungsten
mpich at heping
kind of minor and let daily test catch other errors.
Misc. update:
This won't fix the failure at mir.
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code clean up
Description:
Clean up some warnings in collective chunk IO code
Solution:
Platforms tested:
heping
Misc. update:
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bug fix
Description:
During the process of the combination of collective chunk IO code and the original IO code,
The return value of a function call hasn't been initialized. On 32-bit mode at modi4, that value isn't set to 0 by default. So a fake error value returns.
Solution:
Re-arrange the code so that the return value will be set properly.
Platforms tested:
parallel:
modi4 - 32bit
heping
seq:
heping
Misc. update:
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Change to release script
Description:
Silenced doxygen's output when bin/release doc is run. Now if doxygen
has an error the release script will exit.
Someone forgot to run reconfigure after a Makefile.am, so testing the
release script seems to have had the side effect of regenerating a
Makefile.in.
Platforms tested:
mir
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Change to release script
Description:
Silenced doxygen's output when bin/release doc is run. Now if doxygen
has an error the release script will exit.
Platforms tested:
mir
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Purpose:
Erase one printf line accidently inserted in the code.
Description:
Solution:
Platforms tested:
No need to test.
Misc. update:
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Purpose:
bug fix
Description:
modi4's sgi compiler is too old to support collective IO when there are no contributions from
some processes.
Solution:
Disable mpi_special_collective_io_work macro.
Platforms tested:
NCAR SGI
MODI4
COOPER
Misc. update:
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code cleanup
Description:
remove two printf lines accidently added for debugging at NCSA cobalt.
Solution:
Platforms tested:
No need to test.
Misc. update:
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Enhance the collective chunk IO support
Description:
Solution:
Platforms tested:
Misc. update:
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Enhance collective chunk IO supports
Description:
Add a new test to check the correctness of the HDF5 library behavior for collective IO mode when one process doesn't have any contribution for IO.
Solution:
Platforms tested:
IBM AIX 5.2(copper)
Linux (heping) mpich-1.2.6
Misc. update:
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Enhanced collective chunk IO supports
Description:
1. When using collective IO with chunking storage without any tuning, performance may become worse under some circumstances.
2. Current HDF5 handles raw-data IO per chunk. So for many small chunks, many small IOs will be passed into MPI-IO. That may cause bad performance.
3. For one IO per chunk case, sometimes performance with collective is worse than performance with independent. An obvious case is when only one process is doing IO and all other process are not doing IO, the collective IO will only add overheads for communication. We want to avoid this case. Some management inside our library needs to be done.
Solution:
- Added managements of collective IO supports for chunking storage
inside parallel HDF5
1) Implemented One IO with collective mode for all chunks in the
application by building one MPI derived datatype accross all
chunks.
2) Implemented the decision-making support to do collective IO inside
MPI-IO per chunk.
3) Added the decision-making support to do one IO accross all chunks
or to do multiple IOs with each IO per chunk.
4) Added the support to handle the case some processes won't do any IOs in
collectively.
5) Some MPI-IO package(mpich 1.2.6 or lower, e.g.) cannot handle
collective IO correctly for the case when some processes have no
contributions to IOs, a special macro is added to change
collective IO mode to independent IO mode inside HDF5 library.
Platforms tested:
Parallel:
IBM AIX 5.2(copper)
Linux (heping) mpich-1.2.6
SDSC Teragrid mpich-1.2.5
Linux(Tungsten) mpich-1.2.6
Altix(NCSA cobalt)
Seq:
Linux(heping)
Misc. update:
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Remove deleteline.bat and add in tooltest.bat
Description:
Solution:
Platforms tested:
Misc. update:
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Batch file Improvement
Description:
This batch file is not necessary for new batch files
Solution:
Platforms tested:
Misc. update:
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Add in copyright information
Description:
Solution:
Platforms tested:
Misc. update:
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Batch File Improvement
Description:
Make tool test batch files easier to maintain
Solution:
Platforms tested:
Windows XP
Misc. update:
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Batch file improvement
Description:
Make tool test batch files easier to maintain
Solution:
Platforms tested:
Windows XP
Misc. update:
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Batch file improvement
Description:
This batch file will be call by all of the tool test batch files
Solution:
Platforms tested:
Windows XP
Misc. update:
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Added descriptions for the current collective chunk IO supports.
Description:
Solution:
Platforms tested:
Misc. update:
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Add collective chunk IO supports
Description:
Added a macro hdf5_mpi_special_collective_io_works to filter out
some mpi-io packages that don't support collective IO for no IO
contributions in some processes.
Solution:
1.
"hdf5_mpi_special_collective_io_works=${hdf5_mpi_special_collective_io_works=
'no'}"
has been added at the end of file ia64-linux-gnu and linux-gnulibc1
2. Some comments are added in ia64-linux-gnu and linux-gnulibc1.
3. Documents are added inside RELEASE.txt.
Platforms tested:
Parallel:
IBM AIX 5.2(copper)
Linux (heping) mpich-1.2.6
SDSC Teragrid mpich-1.2.5
Linux(Tungsten) mpich-1.2.6
Altix(NCSA cobalt)
Seq:
Linux(heping)
Misc. update:
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Batch file improvement
Description:
Make tool test batch files easier to maintain
Solution:
Platforms tested:
Windows XP
Misc. update:
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Batch file improvement
Description:
Make tool tests batch files easier to maintain
Solution:
Platforms tested:
Windows XP
Misc. update:
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Supports for collective chunk IO inside parallel HDF5
Description:
Added a macro hdf5_mpi_special_collective_io_works to filter out
some mpi-io packages that don't support collective IO for no IO
contributions in some processes.
Solution:
Using AC_CACHE_VAL to do the job.
Platforms tested:
Parallel:
IBM AIX 5.2(copper)
Linux (heping) mpich-1.2.6
SDSC Teragrid mpich-1.2.5
Linux(Tungsten) mpich-1.2.6
Altix(NCSA cobalt)
Seq:
Linux(heping)
Misc. update:
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Batch file improvement
Description:
Make tool tests batch file easier to maintain
Solution:
Platforms tested:
Windows XP
Misc. update:
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New feature.
Description:
Added the feature to make a release tarball for the documents tree too.
Platforms tested:
Feature code was created by James. I just did some touch up and
tested it by hand in heping. I am checking it in while he is absent.
Misc. update:
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Cleanup
Description:
v1.7:
Removed some debug files left by previous change.
Uncommented the removal of the temporary working directory.
v1.6:
Moved the code of removal of the temporary working directory
to a later location in order to stay in sync with v1.7.
(The later location is needed for v1.7 code but makes no different
to v1.6)
Platforms tested:
Tested by hand.
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bug fix
Description:
the --disable-hl switch was causing linking errors on gif2h5 that uses image api (bugzilla #1)
Solution:
used the condional macro for hl to build gif2h5
Platforms tested:
linux
Misc. update:
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bug fix
Description:
the linking order in Makefile.am of the gif2h5 tool was causing linking errors on some configurations (pgcc, --disable-shared)
Solution:
changed the order of the linking (hl before hdf5)
Platforms tested:
linux, several configurations
solaris
Misc. update:
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bug fix
Description:
the build order of the several folders was causing linking errors
Solution:
changed the "." to be the last to avoid it
Platforms tested:
linux
Misc. update:
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Windows Maintenance
Description:
Update all.sln
Solution:
Platforms tested:
Misc. update:
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Maintenance on Windows
Description:
Change project settings to include path to H5IM.h
Solution:
Platforms tested:
Windows XP
Misc. update:
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Maintenance on Windows
Description:
Change project settings to include the path to H5IM.h
Solution:
Platforms tested:
Misc. update:
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Maintenance on Windows
Description:
Add hdf hl library as the dependency of gifconv and gifconvdll
Solution:
Platforms tested:
Windows XP
Misc. update:
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improvement.
Description:
Release must be run at the top of the hdf5 source directory.
Added a test to verify this condition at the beginning of the
command.
Platforms tested:
Tested by hand.
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some code cleaning
Description:
Solution:
Platforms tested:
none
Misc. update:
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bug fix , bugzilla bug #1
Description:
the gif2h5 was not writing HDF5 images correctly
Solution:
use the Image API to write the image, rewrote the writing functionY
Platforms tested:
linux
solaris
Misc. update:
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Bug fix in release script
Description:
release --private should create a release without changing the current
version of the library. This wasn't working for the libtool version, which
was getting bumped regardless.
Solution:
Fixed the release and h5vers scripts to leave the source directory
unchanged when bin/release --private is run.
Platforms tested:
mir (changes to scripts only)
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Attempt to ensure that the parallel cache test runs at a reasonable
speed with large numbers of processors.
Description:
In some cases, the number of random locks and unlocks was a multiple of
the MPI rank.
Solution:
Use rank % 4 instead of simply rank.
Platforms tested:
copper
Misc. update:
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Add in cache_api.dsp and cache_apidll.dsp
Description:
Solution:
Platforms tested:
Misc. update:
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Windows Maintenance
Description:
Add in cache_api.dsp and cache_apidll.dsp
Solution:
Platforms tested:
Misc. update:
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Maintenance on Windows
Description:
Update all.sln to include cache_api.dsp and cache_apidll.dsp
Solution:
Platforms tested:
Misc. update:
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Maintenance on Windows
Description:
Update workspace to include cache_api.dsp and cache_apidll.dsp
Solution:
Platforms tested:
Misc. update:
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Maintenance on Windows
Description:
Add cache_common.c into cachedll.dsp
Solution:
Platforms tested:
Windows XP
Misc. update:
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Maintenance on Windows
Description:
Add cache_common.c into project cache.dsp
Solution:
Platforms tested:
Windows XP
Misc. update:
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Maintenance on Windows
Description:
Add tests for cache_api.dsp and cache_apidll.dsp
Solution:
Platforms tested:
Misc. update:
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