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* [svn-r29226] HDFFV-9552: merge in java code.Allen Byrne2016-02-29290-46/+74248
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* [svn-r29222] HDFFV-9570: Fix segfault when optional args are last option on ↵Allen Byrne2016-02-281-23/+28
| | | | | | command line. Tested: java_merge DT
* [svn-r29202] Fix for unknown message HDFFV-9697.Vailin Choi2016-02-2412-205/+435
| | | | Tested on jam, ostrich, platypus, kite, quail, osx1010test, emu, mayll, moohan.
* [svn-r29198] Remove if condition for test mask situationAllen Byrne2016-02-241-2/+2
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* [svn-r29190] Add checking for *.err file before trying to readAllen Byrne2016-02-233-12/+12
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* [svn-r29186] HDFFV-9654: add VDS options to h5dumpAllen Byrne2016-02-2330-139/+1257
| | | | includes new data files
* [svn-r29183] Fixed missing reopen test call in tfile from HDFFV-8740 fix.Dana Robinson2016-02-221-0/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++
* [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configureDana Robinson2016-02-2218-317/+1554
| | | | | | | | | | | | external dataset storage path behavior. This check-in fixes a bug in the original check-in where the external path stored in the file struct was not copied on reopen causing subsequent dataset operations to fail. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++ autotools parallel (MPICH 3.1.4) w/ fortran
* [svn-r29179] Revert of 29177 which breaks the autotools build.Dana Robinson2016-02-2216-257/+139
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
* [svn-r29177] HDFFV-9654: add VDS options to h5dumpAllen Byrne2016-02-2216-139/+257
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* [svn-r29172] Fixed double word typo in #ifdef H5_FORTRAN_HAVE_C_SIZEOFScot Breitenfeld2016-02-191-1/+1
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* [svn-r29169] Changed #ifdef to use H5_FORTRAN_C_LONG_DOUBLE_IS_UNIQUE ↵Scot Breitenfeld2016-02-191-2/+2
| | | | | | instead of H5_FORTRAN_HAVE_C_LONG_DOUBLE Tested: jam (gnu)
* [svn-r29165] Various rododoc fixes. Effects comments only.Scot Breitenfeld2016-02-198-51/+22
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* [svn-r29163] changed robodoc specs to look for .F90 filesScot Breitenfeld2016-02-191-4/+1
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* [svn-r29162] added robodoc header informationScot Breitenfeld2016-02-191-11/+10
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* [svn-r29158] HDFFV-9190: Changed configure.ac to define ↵Mike McGreevy2016-02-191-0/+2
| | | | | | | | | H5_USE_18_API_DEFAULT when 'v18' is provided to --with-default-api-version. Tested: h5committest.new and kituo with --with-default-api-version=v18
* [svn-r29155] HDFFV-9652: Add fortran wrappers/test for collective metadata ↵Scot Breitenfeld2016-02-195-121/+330
| | | | | | functions Tested: h5committest.new
* [svn-r29150] fix for Jira issue 9670 - HDF5 segfaults on corrupted file.Mohamad Chaarawi2016-02-1812-144/+223
| | | | | | Change compare callback in Btree2 class to correctly account for errors. tested on bb-8.
* [svn-r29142] Updated the Intel files in config to use the new NO_SYMBOLS flagsDana Robinson2016-02-173-13/+44
| | | | | and modified the failsafe configure flags in ibm-aix to use the new scheme.
* [svn-r29139] Updated PGI compiler files to set NO_SYMBOLS_CFLAGS/FCFLAGS andDana Robinson2016-02-172-9/+6
| | | | | | | moved the -s (strip symbols) option from the production flags to the no symbols flags. Tested on: platypus w/ PGI 15.7 (C, C++, Fortran)
* [svn-r29134] Updated config/solaris to use the latest configure optionDana Robinson2016-02-171-21/+70
| | | | | | | and compiler flag scheme. Tested on: Solaris 11.1 (emu) w/ SunPro 5.12 CC/FC/CXX autotools serial
* [svn-r29132] Added new single-responsibility functions to h5test.c/h that canDana Robinson2016-02-172-0/+311
| | | | | | | | | | | replace functions like h5_clean_files() that also do things like reset the error handler and close fapls. Existing tests have not yet been updated to use these new functions. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
* [svn-r29131] Updated the GNU g++ compiler config file to use the new debug/Dana Robinson2016-02-173-7/+35
| | | | | | | production, etc. system. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial - prod/debug w/ C++
* [svn-r29129] Added NO_SYMBOLS_CFLAGS, etc. to allow stripping symbols whenDana Robinson2016-02-179-26/+73
| | | | | | | | | | | | | | | | | | | | --disable-symbols is specified and to ensure that production mode (where symbol stripping is usually a part of the FLAGS) doesn't conflict with --enable-symbols. This will allow better (though still limited) debugging of production/optimized code. The PGI, XLC, Intel, and Solaris files were not modified and do not generate the symbol removal flag at this time. They'll be updated in future check-ins. In the meantime, production mode on those platforms still usually strips symbols. This check-in also updates the Cygwin-specific files to use the new autotools FLAGS and option scheme when uncommon (non-gnu, etc.) Fortran compilers are used. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (prod/debug w/ and w/o symbols) symbol presence/absence checked with objdump
* [svn-r29127] Moved the --enable-build-mode check in configure.ac to after theDana Robinson2016-02-161-54/+54
| | | | | | | | platform-specific build information so the debug and production flags are not clobbered. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (production & debug)
* [svn-r29119] Converted HDoff_t to off_t in test/external.c.Dana Robinson2016-02-151-116/+114
| | | | | | | Fixes Windows errors. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 64-bit Windows 10 w/ VS2015
* [svn-r29096] fix bug in internal dxpls generated exposed by production and ↵Mohamad Chaarawi2016-02-121-6/+8
| | | | parallel.
* [svn-r29094] Removed the v-1 B-tree package from the list of packages thatDana Robinson2016-02-122-3/+8
| | | | | | | | | | | | can be configured to generate extra debugging output in both the autotools and CMake. This can still be set by defining H5B_DEBUG manually or by using a custom string in configure. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial CMake serial
* [svn-r29092] Fixed uninitialized return value from fortran API.Scot Breitenfeld2016-02-111-2/+2
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* [svn-r29090] Changed "smart quotes" to ASCII ' and " in r28960 code.Dana Robinson2016-02-111-1/+1
| | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools parallel (MPICH 3.1.4) CMake serial (CMake 3.3.2)
* [svn-r29088] - Add a test for retrieving the property values for the new ↵Mohamad Chaarawi2016-02-116-4/+132
| | | | | | | | | coll md functions. - ifdef some code that don't need to be built in parallel - more minor enhancements tested on bb-8 with parallel and serial
* [svn-r29086] missed renaming the GET collective metadata read requirement.Mohamad Chaarawi2016-02-112-4/+4
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* [svn-r29084] Revert of:Dana Robinson2016-02-1116-1783/+526
| | | | | | | | | | | | | | | r29069 and 72 (gheap cleanup) r29041 and 43 (HDFFV-8740 external storage) These cause problems in the daily tests. They will be re-introduced when their respective problems have been addressed. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (check-vfd) w/ Fortran and C++ autotools parallel w/ Fortran CMake serial
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-1072-1561/+3241
|\ | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| * [svn-r29080] merge from trunk.inactive/phdf5_metadata_optMohamad Chaarawi2016-02-103-310/+378
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* | [svn-r29076] Description:Quincey Koziol2016-02-1011-55/+71
| | | | | | | | | | | | | | | | | | Normalize against the phdf5_metadata_opt branch, in preparation for merging it to trunk. Tested on: MacOSX/64 10.11.3 (amazon) w/serial, parallel, and production builds h5committest forthcoming
* | [svn-r29074] fixed integer type for H5Sget_simple_extent_ndims_f argumentScot Breitenfeld2016-02-091-1/+1
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* | [svn-r29072] test/gheap stack size cleanup.Dana Robinson2016-02-092-42/+131
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools (also w/ Valgrind)
* | [svn-r29069] test/gheap cleanup prior to stack size fixes.Dana Robinson2016-02-091-306/+285
| | | | | | | | Tested on: Linux VM (minor changes)
| * [svn-r29079] rename the coll read requirement function.Mohamad Chaarawi2016-02-107-10/+11
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| * [svn-r29077] Description:Quincey Koziol2016-02-1021-517/+392
| | | | | | | | | | | | | | | | Normalize against the trunk, in preparation for final merge. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r29066] - fixing some of the internal usage of dxpls.Mohamad Chaarawi2016-02-0830-72/+1278
| |\ | |/ |/| | | - merge from trunk.
* | [svn-r29062] HDFFV-9564: Implement VDS Fortran wrappers.Scot Breitenfeld2016-02-0820-19/+1219
| | | | | | | | Tested: h5committest.new
| * [svn-r29059] merge from trunk.Mohamad Chaarawi2016-02-07109-2822/+5397
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* | [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-0757-1478/+1722
| | | | | | | | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
* | [svn-r29050] Setting --enable-build-mode=debug now creates an H5_DEBUG_BUILD ↵Dana Robinson2016-02-051-0/+1
| | | | | | | | | | | | definition. Tested on: linux VM (minor change)
* | [svn-r29043] Fixes to make relative external storage work on Windows. Part ↵Dana Robinson2016-02-042-5/+5
| | | | | | | | | | | | | | | | | | of HDFFV-8740. - Fixed typo in Wsetenv(). - Changed HDoff_t back to off_t in test/external.c. The function signature is off_t so the types must match or you can get conversion errors. Tested on 64-bit Windows 10 w/ VS 2015
* | [svn-r29041] Patch from Steffen Kiess that allows a relative path to be ↵Dana Robinson2016-02-0415-216/+1405
| | | | | | | | | | | | | | | | | | | | | | specified for external dataset files set via H5Pset_external(). Resolves HDFFV-8740 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
* | [svn-r29035] Removed external links test from external storage test.Dana Robinson2016-02-023-108/+1
| | | | | | | | | | | | | | | | This test is duplicated more comprehensively in the links.c file so there is no need to copy it over. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
* | [svn-r29034] Update the external test to use the default and latest file format.Dana Robinson2016-02-021-28/+60
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
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